data_3KIP
#
_model_server_result.job_id            v0Dtus_Q9XObyo1S-BN2SQ 
_model_server_result.datetime_utc      '2025-03-04 13:56:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kip 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"YA","auth_seq_id":156}' 
#
_entry.id    3KIP 
#
_exptl.entry_id    3KIP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KIP 
_cell.length_a            159.103 
_cell.length_b            308.11 
_cell.length_c            97.152 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KIP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dodecameric 12 author_and_software_defined_assembly 1 
PISA dodecameric 12 author_and_software_defined_assembly 2 
PISA 24-meric 24 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB 1 1 
M,N,O,P,Q,R,S,T,U,V,W,X,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 AA N N 
? 3 EA N N 
? 3 IA N N 
? 3 MA N N 
? 3 QA N N 
? 3 TA N N 
? 3 YA N N 
? 3 CB N N 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 291 n n 
C C2 TRS sing 292 n n 
C C3 TRS sing 293 n n 
C N TRS sing 294 n n 
C1 O1 TRS sing 295 n n 
C1 H11 TRS sing 296 n n 
C1 H12 TRS sing 297 n n 
C2 O2 TRS sing 298 n n 
C2 H21 TRS sing 299 n n 
C2 H22 TRS sing 300 n n 
C3 O3 TRS sing 301 n n 
C3 H31 TRS sing 302 n n 
C3 H32 TRS sing 303 n n 
N HN1 TRS sing 304 n n 
N HN2 TRS sing 305 n n 
N HN3 TRS sing 306 n n 
O1 HO1 TRS sing 307 n n 
O2 HO2 TRS sing 308 n n 
O3 HO3 TRS sing 309 n n 
#
_atom_sites.entry_id                     3KIP 
_atom_sites.fract_transf_matrix[1][1]    0.006285 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003246 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010293 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Y 2 SO4 A 1 155 1 SO4 SO4 . 
Z 2 SO4 A 1 156 23 SO4 SO4 . 
AA 3 TRS A 1 157 25 TRS TRS . 
BA 2 SO4 B 1 155 2 SO4 SO4 . 
CA 2 SO4 C 1 155 3 SO4 SO4 . 
DA 2 SO4 D 1 155 4 SO4 SO4 . 
EA 3 TRS D 1 156 26 TRS TRS . 
FA 2 SO4 E 1 155 5 SO4 SO4 . 
GA 2 SO4 F 1 155 6 SO4 SO4 . 
HA 2 SO4 G 1 155 7 SO4 SO4 . 
IA 3 TRS G 1 156 27 TRS TRS . 
JA 2 SO4 H 1 155 8 SO4 SO4 . 
KA 2 SO4 I 1 155 9 SO4 SO4 . 
LA 2 SO4 J 1 155 24 SO4 SO4 . 
MA 3 TRS J 1 156 28 TRS TRS . 
NA 2 SO4 K 1 155 10 SO4 SO4 . 
OA 2 SO4 M 1 155 11 SO4 SO4 . 
PA 2 SO4 N 1 155 12 SO4 SO4 . 
QA 3 TRS N 1 156 29 TRS TRS . 
RA 2 SO4 O 1 155 13 SO4 SO4 . 
SA 2 SO4 P 1 155 14 SO4 SO4 . 
TA 3 TRS P 1 156 30 TRS TRS . 
UA 2 SO4 Q 1 155 15 SO4 SO4 . 
VA 2 SO4 R 1 155 16 SO4 SO4 . 
WA 2 SO4 S 1 155 17 SO4 SO4 . 
XA 2 SO4 T 1 155 18 SO4 SO4 . 
YA 3 TRS T 1 156 31 TRS TRS . 
ZA 2 SO4 U 1 155 19 SO4 SO4 . 
AB 2 SO4 V 1 155 20 SO4 SO4 . 
BB 2 SO4 W 1 155 21 SO4 SO4 . 
CB 3 TRS W 1 156 32 TRS TRS . 
DB 2 SO4 X 1 155 22 SO4 SO4 . 
EB 4 HOH A 1 158 54 HOH HOH . 
EB 4 HOH A 2 159 86 HOH HOH . 
EB 4 HOH A 3 160 101 HOH HOH . 
EB 4 HOH A 4 161 121 HOH HOH . 
EB 4 HOH A 5 162 141 HOH HOH . 
EB 4 HOH A 6 163 149 HOH HOH . 
EB 4 HOH A 7 174 174 HOH HOH . 
EB 4 HOH A 8 196 196 HOH HOH . 
FB 4 HOH B 1 156 57 HOH HOH . 
FB 4 HOH B 2 157 59 HOH HOH . 
FB 4 HOH B 3 158 77 HOH HOH . 
FB 4 HOH B 4 159 87 HOH HOH . 
FB 4 HOH B 5 160 96 HOH HOH . 
FB 4 HOH B 6 161 97 HOH HOH . 
FB 4 HOH B 7 162 99 HOH HOH . 
FB 4 HOH B 8 163 105 HOH HOH . 
FB 4 HOH B 9 164 108 HOH HOH . 
FB 4 HOH B 10 165 123 HOH HOH . 
FB 4 HOH B 11 171 171 HOH HOH . 
FB 4 HOH B 12 189 189 HOH HOH . 
FB 4 HOH B 13 198 198 HOH HOH . 
GB 4 HOH C 1 156 72 HOH HOH . 
GB 4 HOH C 2 157 84 HOH HOH . 
GB 4 HOH C 3 158 109 HOH HOH . 
GB 4 HOH C 4 159 112 HOH HOH . 
GB 4 HOH C 5 160 134 HOH HOH . 
GB 4 HOH C 6 195 195 HOH HOH . 
GB 4 HOH C 7 197 197 HOH HOH . 
HB 4 HOH D 1 157 34 HOH HOH . 
HB 4 HOH D 2 158 35 HOH HOH . 
HB 4 HOH D 3 159 67 HOH HOH . 
HB 4 HOH D 4 160 91 HOH HOH . 
HB 4 HOH D 5 161 142 HOH HOH . 
HB 4 HOH D 6 184 184 HOH HOH . 
HB 4 HOH D 7 199 199 HOH HOH . 
IB 4 HOH E 1 156 33 HOH HOH . 
IB 4 HOH E 2 157 66 HOH HOH . 
IB 4 HOH E 3 158 68 HOH HOH . 
IB 4 HOH E 4 159 71 HOH HOH . 
IB 4 HOH E 5 160 73 HOH HOH . 
IB 4 HOH E 6 161 95 HOH HOH . 
IB 4 HOH E 7 162 103 HOH HOH . 
IB 4 HOH E 8 163 111 HOH HOH . 
IB 4 HOH E 9 164 124 HOH HOH . 
IB 4 HOH E 10 165 127 HOH HOH . 
IB 4 HOH E 11 166 132 HOH HOH . 
IB 4 HOH E 12 167 135 HOH HOH . 
IB 4 HOH E 13 168 144 HOH HOH . 
IB 4 HOH E 14 169 145 HOH HOH . 
IB 4 HOH E 15 170 146 HOH HOH . 
IB 4 HOH E 16 178 178 HOH HOH . 
IB 4 HOH E 17 200 200 HOH HOH . 
JB 4 HOH F 1 156 48 HOH HOH . 
JB 4 HOH F 2 157 61 HOH HOH . 
JB 4 HOH F 3 158 64 HOH HOH . 
JB 4 HOH F 4 159 79 HOH HOH . 
JB 4 HOH F 5 160 93 HOH HOH . 
JB 4 HOH F 6 161 130 HOH HOH . 
JB 4 HOH F 7 162 131 HOH HOH . 
JB 4 HOH F 8 163 143 HOH HOH . 
JB 4 HOH F 9 164 147 HOH HOH . 
JB 4 HOH F 10 179 179 HOH HOH . 
KB 4 HOH G 1 157 36 HOH HOH . 
KB 4 HOH G 2 158 51 HOH HOH . 
KB 4 HOH G 3 159 82 HOH HOH . 
KB 4 HOH G 4 160 88 HOH HOH . 
KB 4 HOH G 5 161 122 HOH HOH . 
KB 4 HOH G 6 162 125 HOH HOH . 
KB 4 HOH G 7 163 139 HOH HOH . 
KB 4 HOH G 8 164 148 HOH HOH . 
KB 4 HOH G 9 172 172 HOH HOH . 
LB 4 HOH H 1 156 38 HOH HOH . 
LB 4 HOH H 2 157 98 HOH HOH . 
LB 4 HOH H 3 158 126 HOH HOH . 
LB 4 HOH H 4 191 191 HOH HOH . 
MB 4 HOH I 1 156 37 HOH HOH . 
MB 4 HOH I 2 157 55 HOH HOH . 
MB 4 HOH I 3 158 158 HOH HOH . 
MB 4 HOH I 4 159 69 HOH HOH . 
MB 4 HOH I 5 160 160 HOH HOH . 
MB 4 HOH I 6 161 161 HOH HOH . 
MB 4 HOH I 7 162 162 HOH HOH . 
MB 4 HOH I 8 163 74 HOH HOH . 
MB 4 HOH I 9 164 100 HOH HOH . 
MB 4 HOH I 10 165 113 HOH HOH . 
MB 4 HOH I 11 183 183 HOH HOH . 
NB 4 HOH J 1 157 41 HOH HOH . 
NB 4 HOH J 2 158 62 HOH HOH . 
NB 4 HOH J 3 159 133 HOH HOH . 
NB 4 HOH J 4 160 150 HOH HOH . 
OB 4 HOH K 1 156 39 HOH HOH . 
OB 4 HOH K 2 157 40 HOH HOH . 
OB 4 HOH K 3 158 120 HOH HOH . 
OB 4 HOH K 4 159 137 HOH HOH . 
OB 4 HOH K 5 173 173 HOH HOH . 
PB 4 HOH L 1 155 89 HOH HOH . 
PB 4 HOH L 2 156 118 HOH HOH . 
PB 4 HOH L 3 177 177 HOH HOH . 
PB 4 HOH L 4 193 193 HOH HOH . 
QB 4 HOH M 1 156 128 HOH HOH . 
QB 4 HOH M 2 163 163 HOH HOH . 
QB 4 HOH M 3 164 164 HOH HOH . 
QB 4 HOH M 4 167 167 HOH HOH . 
RB 4 HOH N 1 157 157 HOH HOH . 
RB 4 HOH N 2 158 50 HOH HOH . 
RB 4 HOH N 3 159 56 HOH HOH . 
RB 4 HOH N 4 160 60 HOH HOH . 
RB 4 HOH N 5 161 63 HOH HOH . 
RB 4 HOH N 6 162 70 HOH HOH . 
RB 4 HOH N 7 163 80 HOH HOH . 
RB 4 HOH N 8 164 107 HOH HOH . 
RB 4 HOH N 9 165 165 HOH HOH . 
RB 4 HOH N 10 166 166 HOH HOH . 
RB 4 HOH N 11 167 140 HOH HOH . 
SB 4 HOH O 1 156 138 HOH HOH . 
SB 4 HOH O 2 180 180 HOH HOH . 
TB 4 HOH P 1 157 44 HOH HOH . 
TB 4 HOH P 2 158 53 HOH HOH . 
TB 4 HOH P 3 159 159 HOH HOH . 
TB 4 HOH P 4 160 94 HOH HOH . 
TB 4 HOH P 5 161 136 HOH HOH . 
TB 4 HOH P 6 162 151 HOH HOH . 
TB 4 HOH P 7 181 181 HOH HOH . 
TB 4 HOH P 8 190 190 HOH HOH . 
UB 4 HOH Q 1 156 76 HOH HOH . 
UB 4 HOH Q 2 157 78 HOH HOH . 
UB 4 HOH Q 3 158 106 HOH HOH . 
UB 4 HOH Q 4 159 114 HOH HOH . 
UB 4 HOH Q 5 160 153 HOH HOH . 
UB 4 HOH Q 6 161 154 HOH HOH . 
UB 4 HOH Q 7 175 175 HOH HOH . 
VB 4 HOH R 1 156 42 HOH HOH . 
VB 4 HOH R 2 157 43 HOH HOH . 
VB 4 HOH R 3 158 52 HOH HOH . 
VB 4 HOH R 4 159 65 HOH HOH . 
VB 4 HOH R 5 160 81 HOH HOH . 
VB 4 HOH R 6 161 83 HOH HOH . 
VB 4 HOH R 7 162 85 HOH HOH . 
VB 4 HOH R 8 163 104 HOH HOH . 
VB 4 HOH R 9 164 119 HOH HOH . 
VB 4 HOH R 10 165 129 HOH HOH . 
VB 4 HOH R 11 166 152 HOH HOH . 
VB 4 HOH R 12 167 155 HOH HOH . 
VB 4 HOH R 13 192 192 HOH HOH . 
WB 4 HOH S 1 156 102 HOH HOH . 
WB 4 HOH S 2 157 117 HOH HOH . 
WB 4 HOH S 3 169 169 HOH HOH . 
WB 4 HOH S 4 187 187 HOH HOH . 
XB 4 HOH T 1 170 170 HOH HOH . 
XB 4 HOH T 2 185 185 HOH HOH . 
XB 4 HOH T 3 186 186 HOH HOH . 
YB 4 HOH U 1 156 156 HOH HOH . 
YB 4 HOH U 2 157 90 HOH HOH . 
YB 4 HOH U 3 158 116 HOH HOH . 
YB 4 HOH U 4 168 168 HOH HOH . 
YB 4 HOH U 5 194 194 HOH HOH . 
ZB 4 HOH V 1 156 45 HOH HOH . 
ZB 4 HOH V 2 157 75 HOH HOH . 
ZB 4 HOH V 3 158 92 HOH HOH . 
ZB 4 HOH V 4 159 115 HOH HOH . 
ZB 4 HOH V 5 182 182 HOH HOH . 
AC 4 HOH W 1 157 46 HOH HOH . 
AC 4 HOH W 2 158 47 HOH HOH . 
AC 4 HOH W 3 159 58 HOH HOH . 
AC 4 HOH W 4 160 110 HOH HOH . 
AC 4 HOH W 5 176 176 HOH HOH . 
BC 4 HOH X 1 156 49 HOH HOH . 
BC 4 HOH X 2 188 188 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . YA 3 68.136 47.451 -21.578 1 53.12 ? C TRS 156 T 1 
HETATM 2 C C1 TRS . . . YA 3 66.853 48.296 -21.734 1 52.4 ? C1 TRS 156 T 1 
HETATM 3 C C2 TRS . . . YA 3 67.715 45.972 -21.422 1 52.73 ? C2 TRS 156 T 1 
HETATM 4 C C3 TRS . . . YA 3 68.855 47.848 -20.269 1 52.7 ? C3 TRS 156 T 1 
HETATM 5 N N TRS . . . YA 3 69.006 47.675 -22.793 1 52.35 ? N TRS 156 T 1 
HETATM 6 O O1 TRS . . . YA 3 66.408 48.217 -23.073 1 50.88 ? O1 TRS 156 T 1 
HETATM 7 O O2 TRS . . . YA 3 68.776 45.052 -21.526 1 51.16 ? O2 TRS 156 T 1 
HETATM 8 O O3 TRS . . . YA 3 69.587 49.04 -20.461 1 52.83 ? O3 TRS 156 T 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    265 
_model_server_stats.query_time_ms           399 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           8 
#