data_3KJ1 # _model_server_result.job_id cX67BzOWvLS8GeqXIWdetw _model_server_result.datetime_utc '2024-12-02 12:39:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3}' # _entry.id 3KJ1 # _exptl.entry_id 3KJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KJ1 _cell.length_a 53.066 _cell.length_b 72.007 _cell.length_c 117.845 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 72.007 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 117.845 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 72.007 117.845 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 117 A CYS 286 1_555 A SG CYS 117 A CYS 286 3_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 C ZN ZN . A ZN 1 1_555 G OXT ACT . A ACT 1428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? metalc ? metalc2 D ZN ZN . A ZN 2 1_555 A OE2 GLU 123 A GLU 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc3 E ZN ZN . A ZN 3 1_555 A OD1 ASP 144 A ASP 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc4 E ZN ZN . A ZN 3 1_555 A OE2 GLU 148 A GLU 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc5 F ZN ZN . A ZN 5 1_555 A ND1 HIS 108 A HIS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc6 B OE1 GLU 9 B GLU 9 1_555 I ZN ZN . B ZN 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc7 I ZN ZN . B ZN 23 1_555 K O HOH . B HOH 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KJ1 _atom_sites.fract_transf_matrix[1][1] 0.018844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013888 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1 1 ZN ZN . D 3 ZN A 1 2 2 ZN ZN . E 3 ZN A 1 3 3 ZN ZN . F 3 ZN A 1 5 5 ZN ZN . G 4 ACT A 1 1428 1428 ACT ACT . H 5 CL A 1 328 1 CL CL . I 3 ZN B 1 23 4 ZN ZN . J 6 HOH A 1 4 4 HOH HOH . J 6 HOH A 2 6 6 HOH HOH . J 6 HOH A 3 7 7 HOH HOH . J 6 HOH A 4 8 8 HOH HOH . J 6 HOH A 5 9 9 HOH HOH . J 6 HOH A 6 10 10 HOH HOH . J 6 HOH A 7 11 11 HOH HOH . J 6 HOH A 8 12 12 HOH HOH . J 6 HOH A 9 13 13 HOH HOH . J 6 HOH A 10 15 15 HOH HOH . J 6 HOH A 11 16 16 HOH HOH . J 6 HOH A 12 17 17 HOH HOH . J 6 HOH A 13 18 18 HOH HOH . J 6 HOH A 14 19 19 HOH HOH . J 6 HOH A 15 20 20 HOH HOH . J 6 HOH A 16 21 21 HOH HOH . J 6 HOH A 17 22 22 HOH HOH . J 6 HOH A 18 23 23 HOH HOH . J 6 HOH A 19 24 24 HOH HOH . J 6 HOH A 20 25 25 HOH HOH . J 6 HOH A 21 28 28 HOH HOH . J 6 HOH A 22 30 30 HOH HOH . J 6 HOH A 23 31 31 HOH HOH . J 6 HOH A 24 32 32 HOH HOH . J 6 HOH A 25 35 35 HOH HOH . J 6 HOH A 26 37 37 HOH HOH . J 6 HOH A 27 38 38 HOH HOH . J 6 HOH A 28 39 39 HOH HOH . J 6 HOH A 29 40 40 HOH HOH . J 6 HOH A 30 42 42 HOH HOH . J 6 HOH A 31 43 43 HOH HOH . J 6 HOH A 32 45 45 HOH HOH . J 6 HOH A 33 46 46 HOH HOH . J 6 HOH A 34 47 47 HOH HOH . J 6 HOH A 35 48 48 HOH HOH . J 6 HOH A 36 51 51 HOH HOH . J 6 HOH A 37 52 52 HOH HOH . J 6 HOH A 38 53 53 HOH HOH . J 6 HOH A 39 54 54 HOH HOH . J 6 HOH A 40 55 55 HOH HOH . J 6 HOH A 41 56 56 HOH HOH . J 6 HOH A 42 57 57 HOH HOH . J 6 HOH A 43 59 59 HOH HOH . J 6 HOH A 44 60 60 HOH HOH . J 6 HOH A 45 61 61 HOH HOH . J 6 HOH A 46 62 62 HOH HOH . J 6 HOH A 47 63 63 HOH HOH . J 6 HOH A 48 64 64 HOH HOH . J 6 HOH A 49 65 65 HOH HOH . J 6 HOH A 50 67 67 HOH HOH . J 6 HOH A 51 68 68 HOH HOH . J 6 HOH A 52 69 69 HOH HOH . J 6 HOH A 53 70 70 HOH HOH . J 6 HOH A 54 71 71 HOH HOH . J 6 HOH A 55 72 72 HOH HOH . J 6 HOH A 56 74 74 HOH HOH . J 6 HOH A 57 76 76 HOH HOH . J 6 HOH A 58 77 77 HOH HOH . J 6 HOH A 59 78 78 HOH HOH . J 6 HOH A 60 79 79 HOH HOH . J 6 HOH A 61 80 80 HOH HOH . J 6 HOH A 62 81 81 HOH HOH . J 6 HOH A 63 82 82 HOH HOH . J 6 HOH A 64 83 83 HOH HOH . J 6 HOH A 65 84 84 HOH HOH . J 6 HOH A 66 85 85 HOH HOH . J 6 HOH A 67 86 86 HOH HOH . J 6 HOH A 68 87 87 HOH HOH . J 6 HOH A 69 88 88 HOH HOH . J 6 HOH A 70 89 89 HOH HOH . J 6 HOH A 71 90 90 HOH HOH . J 6 HOH A 72 91 91 HOH HOH . J 6 HOH A 73 92 92 HOH HOH . J 6 HOH A 74 93 93 HOH HOH . J 6 HOH A 75 94 94 HOH HOH . J 6 HOH A 76 95 95 HOH HOH . J 6 HOH A 77 96 96 HOH HOH . J 6 HOH A 78 97 97 HOH HOH . J 6 HOH A 79 98 98 HOH HOH . J 6 HOH A 80 99 99 HOH HOH . J 6 HOH A 81 100 100 HOH HOH . J 6 HOH A 82 101 101 HOH HOH . J 6 HOH A 83 102 102 HOH HOH . J 6 HOH A 84 103 103 HOH HOH . J 6 HOH A 85 104 104 HOH HOH . J 6 HOH A 86 105 105 HOH HOH . J 6 HOH A 87 106 106 HOH HOH . J 6 HOH A 88 107 107 HOH HOH . J 6 HOH A 89 108 108 HOH HOH . J 6 HOH A 90 109 109 HOH HOH . J 6 HOH A 91 111 111 HOH HOH . J 6 HOH A 92 112 112 HOH HOH . J 6 HOH A 93 113 113 HOH HOH . J 6 HOH A 94 115 115 HOH HOH . J 6 HOH A 95 329 1 HOH HOH . J 6 HOH A 96 330 3 HOH HOH . J 6 HOH A 97 331 5 HOH HOH . K 6 HOH B 1 24 2 HOH HOH . K 6 HOH B 2 25 14 HOH HOH . K 6 HOH B 3 26 26 HOH HOH . K 6 HOH B 4 27 27 HOH HOH . K 6 HOH B 5 29 29 HOH HOH . K 6 HOH B 6 33 33 HOH HOH . K 6 HOH B 7 34 34 HOH HOH . K 6 HOH B 8 36 36 HOH HOH . K 6 HOH B 9 41 41 HOH HOH . K 6 HOH B 10 44 44 HOH HOH . K 6 HOH B 11 49 49 HOH HOH . K 6 HOH B 12 50 50 HOH HOH . K 6 HOH B 13 58 58 HOH HOH . K 6 HOH B 14 66 66 HOH HOH . K 6 HOH B 15 73 73 HOH HOH . K 6 HOH B 16 75 75 HOH HOH . K 6 HOH B 17 110 110 HOH HOH . K 6 HOH B 18 114 114 HOH HOH . K 6 HOH B 19 116 116 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -10.72 _atom_site.Cartn_y 16.222 _atom_site.Cartn_z 28.056 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 3 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #