data_3KJ4
#
_model_server_result.job_id            kSvnXGMatXDK1TkWSgm4Xg 
_model_server_result.datetime_utc      '2024-11-24 21:48:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kj4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":315}' 
#
_entry.id    3KJ4 
#
_exptl.entry_id    3KJ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          7 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KJ4 
_cell.length_a            188.664 
_cell.length_b            125.488 
_cell.length_c            90.575 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KJ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K 1 1 
D,E,F,L,M,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 K N N 
? 7 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 94 L CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
disulf ? disulf2 A SG CYS 139 L CYS 139 1_555 A SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
disulf ? disulf4 B SG CYS 147 H CYS 147 1_555 B SG CYS 202 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
disulf ? disulf5 C SG CYS 1 A CYS 27 1_555 C SG CYS 7 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf6 C SG CYS 5 A CYS 31 1_555 C SG CYS 17 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf7 C SG CYS 238 A CYS 264 1_555 C SG CYS 261 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf8 D SG CYS 23 B CYS 23 1_555 D SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
disulf ? disulf9 D SG CYS 139 B CYS 139 1_555 D SG CYS 199 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf10 E SG CYS 22 C CYS 22 1_555 E SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
disulf ? disulf11 E SG CYS 147 C CYS 147 1_555 E SG CYS 202 C CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
disulf ? disulf12 F SG CYS 1 D CYS 27 1_555 F SG CYS 7 D CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf13 F SG CYS 5 D CYS 31 1_555 F SG CYS 17 D CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf14 F SG CYS 238 D CYS 264 1_555 F SG CYS 261 D CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 259 n n 
C1 O1 NAG sing 260 n n 
C1 O5 NAG sing 261 n n 
C1 H1 NAG sing 262 n n 
C2 C3 NAG sing 263 n n 
C2 N2 NAG sing 264 n n 
C2 H2 NAG sing 265 n n 
C3 C4 NAG sing 266 n n 
C3 O3 NAG sing 267 n n 
C3 H3 NAG sing 268 n n 
C4 C5 NAG sing 269 n n 
C4 O4 NAG sing 270 n n 
C4 H4 NAG sing 271 n n 
C5 C6 NAG sing 272 n n 
C5 O5 NAG sing 273 n n 
C5 H5 NAG sing 274 n n 
C6 O6 NAG sing 275 n n 
C6 H61 NAG sing 276 n n 
C6 H62 NAG sing 277 n n 
C7 C8 NAG sing 278 n n 
C7 N2 NAG sing 279 n n 
C7 O7 NAG doub 280 n n 
C8 H81 NAG sing 281 n n 
C8 H82 NAG sing 282 n n 
C8 H83 NAG sing 283 n n 
N2 HN2 NAG sing 284 n n 
O1 HO1 NAG sing 285 n n 
O3 HO3 NAG sing 286 n n 
O4 HO4 NAG sing 287 n n 
O6 HO6 NAG sing 288 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3KJ4 
_atom_sites.fract_transf_matrix[1][1]    0.0053 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007969 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011041 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 MAN H 1 303 303 MAN MAN . 
H 5 ZN H 1 221 1 ZN ZN . 
I 6 NDG A 1 313 301 NDG NDG . 
J 6 NDG A 1 314 302 NDG NDG . 
K 7 NAG A 1 315 305 NAG NAG . 
L 5 ZN C 1 221 3 ZN ZN . 
M 6 NDG D 1 401 401 NDG NDG . 
N 6 NDG D 1 402 402 NDG NDG . 
O 7 NAG D 1 405 405 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . K 7 124.221 45.08 32.333 1 62.55 ? C1 NAG 315 A 1 
HETATM 2 C C2 NAG . . . K 7 122.949 45.302 33.164 1 67.58 ? C2 NAG 315 A 1 
HETATM 3 C C3 NAG . . . K 7 123.218 46.548 34.034 1 66.71 ? C3 NAG 315 A 1 
HETATM 4 C C4 NAG . . . K 7 124.287 46.245 35.064 1 63.9 ? C4 NAG 315 A 1 
HETATM 5 C C5 NAG . . . K 7 125.456 45.4 34.526 1 59.85 ? C5 NAG 315 A 1 
HETATM 6 C C6 NAG . . . K 7 125.718 44.391 35.645 1 58.63 ? C6 NAG 315 A 1 
HETATM 7 C C7 NAG . . . K 7 120.39 45.122 32.879 1 71.03 ? C7 NAG 315 A 1 
HETATM 8 C C8 NAG . . . K 7 120.053 44.704 34.323 1 66.13 ? C8 NAG 315 A 1 
HETATM 9 N N2 NAG . . . K 7 121.67 45.361 32.409 1 68.54 ? N2 NAG 315 A 1 
HETATM 10 O O3 NAG . . . K 7 122.111 46.975 34.819 1 68.65 ? O3 NAG 315 A 1 
HETATM 11 O O4 NAG . . . K 7 124.715 47.495 35.608 1 65.6 ? O4 NAG 315 A 1 
HETATM 12 O O5 NAG . . . K 7 125.271 44.736 33.254 1 60.42 ? O5 NAG 315 A 1 
HETATM 13 O O6 NAG . . . K 7 125.619 45.038 36.909 1 56.11 ? O6 NAG 315 A 1 
HETATM 14 O O7 NAG . . . K 7 119.438 45.239 32.09 1 70.83 ? O7 NAG 315 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#