data_3KJN
#
_model_server_result.job_id            87Cr2vhPsFs7m73lZtS6Gw 
_model_server_result.datetime_utc      '2024-12-27 15:03:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kjn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":900}' 
#
_entry.id    3KJN 
#
_exptl.entry_id    3KJN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.251 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3KJN 
_cell.length_a            62.598 
_cell.length_b            62.598 
_cell.length_c            129.389 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KJN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 43.129667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             150 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              360 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            C1 
_struct_conn.ptnr2_label_comp_id            B93 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             B93 
_struct_conn.ptnr2_auth_seq_id              950 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.815 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C4 H10 O2 S2' 
_chem_comp.formula_weight    154.251 
_chem_comp.id                DTT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1,4-DITHIOTHREITOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 DTT sing 165 n n 
S1 HS1 DTT sing 166 n n 
C1 C2 DTT sing 167 n n 
C1 H11 DTT sing 168 n n 
C1 H12 DTT sing 169 n n 
C2 O2 DTT sing 170 n n 
C2 C3 DTT sing 171 n n 
C2 H2 DTT sing 172 n n 
O2 HO2 DTT sing 173 n n 
C3 O3 DTT sing 174 n n 
C3 C4 DTT sing 175 n n 
C3 H3 DTT sing 176 n n 
O3 HO3 DTT sing 177 n n 
C4 S4 DTT sing 178 n n 
C4 H41 DTT sing 179 n n 
C4 H42 DTT sing 180 n n 
S4 HS2 DTT sing 181 n n 
#
_atom_sites.entry_id                     3KJN 
_atom_sites.fract_transf_matrix[1][1]    0.015975 
_atom_sites.fract_transf_matrix[1][2]    0.009223 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018446 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007729 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 DTT A 1 900 900 DTT DTT . 
D 4 B93 A 1 950 950 B93 B93 . 
E 5 HOH A 1 484 484 HOH HOH . 
E 5 HOH A 2 492 492 HOH HOH . 
E 5 HOH A 3 494 494 HOH HOH . 
E 5 HOH A 4 499 499 HOH HOH . 
E 5 HOH A 5 500 500 HOH HOH . 
E 5 HOH A 6 501 501 HOH HOH . 
E 5 HOH A 7 502 502 HOH HOH . 
E 5 HOH A 8 503 503 HOH HOH . 
E 5 HOH A 9 506 506 HOH HOH . 
E 5 HOH A 10 507 507 HOH HOH . 
E 5 HOH A 11 508 508 HOH HOH . 
E 5 HOH A 12 509 509 HOH HOH . 
E 5 HOH A 13 510 510 HOH HOH . 
E 5 HOH A 14 512 512 HOH HOH . 
E 5 HOH A 15 514 514 HOH HOH . 
E 5 HOH A 16 515 515 HOH HOH . 
E 5 HOH A 17 517 517 HOH HOH . 
E 5 HOH A 18 521 521 HOH HOH . 
E 5 HOH A 19 522 522 HOH HOH . 
E 5 HOH A 20 523 523 HOH HOH . 
E 5 HOH A 21 524 524 HOH HOH . 
E 5 HOH A 22 525 525 HOH HOH . 
E 5 HOH A 23 526 526 HOH HOH . 
E 5 HOH A 24 527 527 HOH HOH . 
E 5 HOH A 25 530 530 HOH HOH . 
E 5 HOH A 26 531 531 HOH HOH . 
E 5 HOH A 27 533 533 HOH HOH . 
E 5 HOH A 28 534 534 HOH HOH . 
E 5 HOH A 29 536 536 HOH HOH . 
E 5 HOH A 30 538 538 HOH HOH . 
E 5 HOH A 31 541 541 HOH HOH . 
E 5 HOH A 32 543 543 HOH HOH . 
E 5 HOH A 33 545 545 HOH HOH . 
E 5 HOH A 34 547 547 HOH HOH . 
E 5 HOH A 35 548 548 HOH HOH . 
E 5 HOH A 36 549 549 HOH HOH . 
E 5 HOH A 37 550 550 HOH HOH . 
E 5 HOH A 38 551 551 HOH HOH . 
E 5 HOH A 39 552 552 HOH HOH . 
E 5 HOH A 40 553 553 HOH HOH . 
E 5 HOH A 41 554 554 HOH HOH . 
E 5 HOH A 42 555 555 HOH HOH . 
E 5 HOH A 43 557 557 HOH HOH . 
E 5 HOH A 44 558 558 HOH HOH . 
E 5 HOH A 45 559 559 HOH HOH . 
E 5 HOH A 46 560 560 HOH HOH . 
E 5 HOH A 47 562 562 HOH HOH . 
E 5 HOH A 48 565 565 HOH HOH . 
E 5 HOH A 49 566 566 HOH HOH . 
E 5 HOH A 50 567 567 HOH HOH . 
E 5 HOH A 51 568 568 HOH HOH . 
E 5 HOH A 52 569 569 HOH HOH . 
E 5 HOH A 53 572 572 HOH HOH . 
E 5 HOH A 54 573 573 HOH HOH . 
E 5 HOH A 55 575 575 HOH HOH . 
E 5 HOH A 56 577 577 HOH HOH . 
E 5 HOH A 57 578 578 HOH HOH . 
E 5 HOH A 58 580 580 HOH HOH . 
E 5 HOH A 59 581 581 HOH HOH . 
E 5 HOH A 60 582 582 HOH HOH . 
E 5 HOH A 61 584 584 HOH HOH . 
E 5 HOH A 62 587 587 HOH HOH . 
E 5 HOH A 63 589 589 HOH HOH . 
E 5 HOH A 64 590 590 HOH HOH . 
E 5 HOH A 65 591 591 HOH HOH . 
E 5 HOH A 66 592 592 HOH HOH . 
E 5 HOH A 67 593 593 HOH HOH . 
E 5 HOH A 68 594 594 HOH HOH . 
E 5 HOH A 69 595 595 HOH HOH . 
E 5 HOH A 70 597 597 HOH HOH . 
E 5 HOH A 71 599 599 HOH HOH . 
E 5 HOH A 72 600 600 HOH HOH . 
E 5 HOH A 73 601 601 HOH HOH . 
E 5 HOH A 74 602 602 HOH HOH . 
E 5 HOH A 75 604 604 HOH HOH . 
E 5 HOH A 76 606 606 HOH HOH . 
E 5 HOH A 77 607 607 HOH HOH . 
E 5 HOH A 78 609 609 HOH HOH . 
E 5 HOH A 79 610 610 HOH HOH . 
E 5 HOH A 80 611 611 HOH HOH . 
E 5 HOH A 81 613 613 HOH HOH . 
E 5 HOH A 82 615 615 HOH HOH . 
E 5 HOH A 83 616 616 HOH HOH . 
E 5 HOH A 84 617 617 HOH HOH . 
E 5 HOH A 85 619 619 HOH HOH . 
E 5 HOH A 86 620 620 HOH HOH . 
E 5 HOH A 87 621 621 HOH HOH . 
E 5 HOH A 88 623 623 HOH HOH . 
E 5 HOH A 89 624 624 HOH HOH . 
E 5 HOH A 90 625 625 HOH HOH . 
E 5 HOH A 91 632 632 HOH HOH . 
E 5 HOH A 92 635 635 HOH HOH . 
E 5 HOH A 93 637 637 HOH HOH . 
E 5 HOH A 94 639 639 HOH HOH . 
E 5 HOH A 95 640 640 HOH HOH . 
E 5 HOH A 96 641 641 HOH HOH . 
E 5 HOH A 97 642 642 HOH HOH . 
E 5 HOH A 98 643 643 HOH HOH . 
E 5 HOH A 99 644 644 HOH HOH . 
E 5 HOH A 100 645 645 HOH HOH . 
E 5 HOH A 101 646 646 HOH HOH . 
E 5 HOH A 102 648 648 HOH HOH . 
E 5 HOH A 103 650 650 HOH HOH . 
E 5 HOH A 104 651 651 HOH HOH . 
E 5 HOH A 105 652 652 HOH HOH . 
E 5 HOH A 106 653 653 HOH HOH . 
E 5 HOH A 107 654 654 HOH HOH . 
E 5 HOH A 108 655 655 HOH HOH . 
E 5 HOH A 109 657 657 HOH HOH . 
E 5 HOH A 110 658 658 HOH HOH . 
E 5 HOH A 111 661 661 HOH HOH . 
E 5 HOH A 112 665 665 HOH HOH . 
E 5 HOH A 113 667 667 HOH HOH . 
E 5 HOH A 114 669 669 HOH HOH . 
E 5 HOH A 115 670 670 HOH HOH . 
E 5 HOH A 116 671 671 HOH HOH . 
E 5 HOH A 117 672 672 HOH HOH . 
E 5 HOH A 118 674 674 HOH HOH . 
E 5 HOH A 119 675 675 HOH HOH . 
E 5 HOH A 120 677 677 HOH HOH . 
E 5 HOH A 121 678 678 HOH HOH . 
E 5 HOH A 122 680 680 HOH HOH . 
E 5 HOH A 123 682 682 HOH HOH . 
E 5 HOH A 124 683 683 HOH HOH . 
E 5 HOH A 125 684 684 HOH HOH . 
E 5 HOH A 126 685 685 HOH HOH . 
E 5 HOH A 127 687 687 HOH HOH . 
E 5 HOH A 128 688 688 HOH HOH . 
E 5 HOH A 129 693 693 HOH HOH . 
E 5 HOH A 130 694 694 HOH HOH . 
E 5 HOH A 131 697 697 HOH HOH . 
E 5 HOH A 132 698 698 HOH HOH . 
E 5 HOH A 133 699 699 HOH HOH . 
E 5 HOH A 134 700 700 HOH HOH . 
E 5 HOH A 135 704 704 HOH HOH . 
E 5 HOH A 136 705 705 HOH HOH . 
E 5 HOH A 137 707 707 HOH HOH . 
E 5 HOH A 138 709 709 HOH HOH . 
E 5 HOH A 139 710 710 HOH HOH . 
E 5 HOH A 140 711 711 HOH HOH . 
E 5 HOH A 141 714 714 HOH HOH . 
E 5 HOH A 142 716 716 HOH HOH . 
E 5 HOH A 143 718 718 HOH HOH . 
E 5 HOH A 144 719 719 HOH HOH . 
E 5 HOH A 145 725 725 HOH HOH . 
E 5 HOH A 146 726 726 HOH HOH . 
E 5 HOH A 147 727 727 HOH HOH . 
E 5 HOH A 148 730 730 HOH HOH . 
E 5 HOH A 149 731 731 HOH HOH . 
E 5 HOH A 150 733 733 HOH HOH . 
E 5 HOH A 151 737 737 HOH HOH . 
E 5 HOH A 152 739 739 HOH HOH . 
E 5 HOH A 153 741 741 HOH HOH . 
E 5 HOH A 154 745 745 HOH HOH . 
E 5 HOH A 155 746 746 HOH HOH . 
E 5 HOH A 156 747 747 HOH HOH . 
E 5 HOH A 157 748 748 HOH HOH . 
E 5 HOH A 158 750 750 HOH HOH . 
E 5 HOH A 159 752 752 HOH HOH . 
E 5 HOH A 160 755 755 HOH HOH . 
E 5 HOH A 161 756 756 HOH HOH . 
E 5 HOH A 162 758 758 HOH HOH . 
E 5 HOH A 163 759 759 HOH HOH . 
E 5 HOH A 164 760 760 HOH HOH . 
E 5 HOH A 165 761 761 HOH HOH . 
E 5 HOH A 166 762 762 HOH HOH . 
F 5 HOH B 1 483 483 HOH HOH . 
F 5 HOH B 2 485 485 HOH HOH . 
F 5 HOH B 3 486 486 HOH HOH . 
F 5 HOH B 4 487 487 HOH HOH . 
F 5 HOH B 5 488 488 HOH HOH . 
F 5 HOH B 6 489 489 HOH HOH . 
F 5 HOH B 7 490 490 HOH HOH . 
F 5 HOH B 8 491 491 HOH HOH . 
F 5 HOH B 9 493 493 HOH HOH . 
F 5 HOH B 10 495 495 HOH HOH . 
F 5 HOH B 11 496 496 HOH HOH . 
F 5 HOH B 12 497 497 HOH HOH . 
F 5 HOH B 13 498 498 HOH HOH . 
F 5 HOH B 14 511 511 HOH HOH . 
F 5 HOH B 15 513 513 HOH HOH . 
F 5 HOH B 16 516 516 HOH HOH . 
F 5 HOH B 17 518 518 HOH HOH . 
F 5 HOH B 18 520 520 HOH HOH . 
F 5 HOH B 19 528 528 HOH HOH . 
F 5 HOH B 20 529 529 HOH HOH . 
F 5 HOH B 21 532 532 HOH HOH . 
F 5 HOH B 22 535 535 HOH HOH . 
F 5 HOH B 23 537 537 HOH HOH . 
F 5 HOH B 24 539 539 HOH HOH . 
F 5 HOH B 25 540 540 HOH HOH . 
F 5 HOH B 26 542 542 HOH HOH . 
F 5 HOH B 27 544 544 HOH HOH . 
F 5 HOH B 28 546 546 HOH HOH . 
F 5 HOH B 29 556 556 HOH HOH . 
F 5 HOH B 30 561 561 HOH HOH . 
F 5 HOH B 31 563 563 HOH HOH . 
F 5 HOH B 32 564 564 HOH HOH . 
F 5 HOH B 33 570 570 HOH HOH . 
F 5 HOH B 34 571 571 HOH HOH . 
F 5 HOH B 35 574 574 HOH HOH . 
F 5 HOH B 36 576 576 HOH HOH . 
F 5 HOH B 37 579 579 HOH HOH . 
F 5 HOH B 38 583 583 HOH HOH . 
F 5 HOH B 39 585 585 HOH HOH . 
F 5 HOH B 40 588 588 HOH HOH . 
F 5 HOH B 41 598 598 HOH HOH . 
F 5 HOH B 42 605 605 HOH HOH . 
F 5 HOH B 43 608 608 HOH HOH . 
F 5 HOH B 44 612 612 HOH HOH . 
F 5 HOH B 45 618 618 HOH HOH . 
F 5 HOH B 46 622 622 HOH HOH . 
F 5 HOH B 47 627 627 HOH HOH . 
F 5 HOH B 48 628 628 HOH HOH . 
F 5 HOH B 49 649 649 HOH HOH . 
F 5 HOH B 50 656 656 HOH HOH . 
F 5 HOH B 51 659 659 HOH HOH . 
F 5 HOH B 52 660 660 HOH HOH . 
F 5 HOH B 53 662 662 HOH HOH . 
F 5 HOH B 54 663 663 HOH HOH . 
F 5 HOH B 55 664 664 HOH HOH . 
F 5 HOH B 56 668 668 HOH HOH . 
F 5 HOH B 57 673 673 HOH HOH . 
F 5 HOH B 58 676 676 HOH HOH . 
F 5 HOH B 59 679 679 HOH HOH . 
F 5 HOH B 60 681 681 HOH HOH . 
F 5 HOH B 61 686 686 HOH HOH . 
F 5 HOH B 62 689 689 HOH HOH . 
F 5 HOH B 63 690 690 HOH HOH . 
F 5 HOH B 64 691 691 HOH HOH . 
F 5 HOH B 65 692 692 HOH HOH . 
F 5 HOH B 66 695 695 HOH HOH . 
F 5 HOH B 67 696 696 HOH HOH . 
F 5 HOH B 68 708 708 HOH HOH . 
F 5 HOH B 69 715 715 HOH HOH . 
F 5 HOH B 70 720 720 HOH HOH . 
F 5 HOH B 71 722 722 HOH HOH . 
F 5 HOH B 72 728 728 HOH HOH . 
F 5 HOH B 73 735 735 HOH HOH . 
F 5 HOH B 74 740 740 HOH HOH . 
F 5 HOH B 75 751 751 HOH HOH . 
F 5 HOH B 76 754 754 HOH HOH . 
F 5 HOH B 77 763 763 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 DTT . . . C 3 -9.788 26.695 17.793 1 10.66 ? S1 DTT 900 A 1 
HETATM 2 C C1 DTT . . . C 3 -10.064 27.783 16.375 1 9.6 ? C1 DTT 900 A 1 
HETATM 3 C C2 DTT . . . C 3 -9.539 29.198 16.616 1 9.94 ? C2 DTT 900 A 1 
HETATM 4 O O2 DTT . . . C 3 -10.369 29.891 17.531 1 9.71 ? O2 DTT 900 A 1 
HETATM 5 C C3 DTT . . . C 3 -9.434 29.986 15.307 1 10.46 ? C3 DTT 900 A 1 
HETATM 6 O O3 DTT . . . C 3 -10.705 30.142 14.727 1 9.51 ? O3 DTT 900 A 1 
HETATM 7 C C4 DTT . . . C 3 -8.815 31.358 15.553 1 11.02 ? C4 DTT 900 A 1 
HETATM 8 S S4 DTT . . . C 3 -8.358 32.221 14.031 1 11.43 ? S4 DTT 900 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#