data_3KJQ # _model_server_result.job_id VV5LrX8cdkkbsbDc78Wqng _model_server_result.datetime_utc '2024-11-04 23:20:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kjq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":481}' # _entry.id 3KJQ # _exptl.entry_id 3KJQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 591.997 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S)-3-({[(5S,8R)-2-(3-carboxypropyl)-8-(2-{[(4-chlorophenyl)acetyl]amino}ethyl)-1,3-dioxo-2,3,5,8-tetrahydro-1H-[1,2,4]triazolo[1,2-a]pyridazin-5-yl]carbonyl}amino)-4-oxopentanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KJQ _cell.length_a 63.974 _cell.length_b 63.974 _cell.length_c 130.847 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KJQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 43.615667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 150 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 360 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id B94 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id B94 _struct_conn.ptnr2_auth_seq_id 480 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.814 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C26 H30 Cl N5 O9' _chem_comp.formula_weight 591.997 _chem_comp.id B94 _chem_comp.mon_nstd_flag . _chem_comp.name '(3S)-3-({[(5S,8R)-2-(3-carboxypropyl)-8-(2-{[(4-chlorophenyl)acetyl]amino}ethyl)-1,3-dioxo-2,3,5,8-tetrahydro-1H-[1,2,4]triazolo[1,2-a]pyridazin-5-yl]carbonyl}amino)-4-oxopentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 B94 sing 70 n n C2 C4 B94 sing 71 n n O3 C2 B94 doub 72 n n C4 N9 B94 sing 73 n n C5 C4 B94 sing 74 n n C5 C6 B94 sing 75 n n C6 O7 B94 sing 76 n n O8 C6 B94 doub 77 n n N9 C10 B94 sing 78 n n C10 O11 B94 doub 79 n n C10 C12 B94 sing 80 n n C12 N30 B94 sing 81 n n C13 C12 B94 sing 82 n n C13 C14 B94 doub 83 n n C14 C15 B94 sing 84 n n C15 N29 B94 sing 85 n n C15 C16 B94 sing 86 n n N29 C40 B94 sing 87 n n N30 N29 B94 sing 88 n n N30 C31 B94 sing 89 n n C31 N33 B94 sing 90 n n O32 C31 B94 doub 91 n n N33 C40 B94 sing 92 n n N33 C34 B94 sing 93 n n C35 C34 B94 sing 94 n n C35 C36 B94 sing 95 n n C36 C37 B94 sing 96 n n C37 O39 B94 sing 97 n n O38 C37 B94 doub 98 n n C40 O41 B94 doub 99 n n C16 C18 B94 sing 100 n n C18 N5 B94 sing 101 n n N5 C19 B94 sing 102 n n C19 C20 B94 sing 103 n n C19 O9 B94 doub 104 n n C20 C21 B94 sing 105 n n C21 C22 B94 doub 106 n y C21 C26 B94 sing 107 n y C22 C23 B94 sing 108 n y C23 C24 B94 doub 109 n y C24 C25 B94 sing 110 n y C25 C26 B94 doub 111 n y C24 CL1 B94 sing 112 n n C1 H1 B94 sing 113 n n C1 H1A B94 sing 114 n n C1 H1B B94 sing 115 n n C4 H4 B94 sing 116 n n C5 H5 B94 sing 117 n n C5 H5A B94 sing 118 n n O7 HO7 B94 sing 119 n n N9 HN9 B94 sing 120 n n C12 H12 B94 sing 121 n n C13 H13 B94 sing 122 n n C14 H14 B94 sing 123 n n C15 H15 B94 sing 124 n n C16 H16 B94 sing 125 n n C16 H16A B94 sing 126 n n C34 H34 B94 sing 127 n n C34 H34A B94 sing 128 n n C35 H35 B94 sing 129 n n C35 H35A B94 sing 130 n n C36 H36 B94 sing 131 n n C36 H36A B94 sing 132 n n O39 HO39 B94 sing 133 n n C18 H22 B94 sing 134 n n C18 H23 B94 sing 135 n n N5 H24 B94 sing 136 n n C20 H25 B94 sing 137 n n C20 H26 B94 sing 138 n n C22 H27 B94 sing 139 n n C23 H28 B94 sing 140 n n C25 H29 B94 sing 141 n n C26 H30 B94 sing 142 n n # _atom_sites.entry_id 3KJQ _atom_sites.fract_transf_matrix[1][1] 0.015631 _atom_sites.fract_transf_matrix[1][2] 0.009025 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 B94 A 1 480 480 B94 B94 . D 3 B94 A 1 481 481 B94 B94 . E 4 HOH A 1 482 482 HOH HOH . E 4 HOH A 2 483 483 HOH HOH . E 4 HOH A 3 484 484 HOH HOH . E 4 HOH A 4 485 485 HOH HOH . E 4 HOH A 5 486 486 HOH HOH . E 4 HOH A 6 487 487 HOH HOH . E 4 HOH A 7 488 488 HOH HOH . E 4 HOH A 8 489 489 HOH HOH . E 4 HOH A 9 490 490 HOH HOH . E 4 HOH A 10 491 491 HOH HOH . E 4 HOH A 11 492 492 HOH HOH . E 4 HOH A 12 493 493 HOH HOH . E 4 HOH A 13 494 494 HOH HOH . E 4 HOH A 14 495 495 HOH HOH . E 4 HOH A 15 496 496 HOH HOH . E 4 HOH A 16 497 497 HOH HOH . E 4 HOH A 17 498 498 HOH HOH . E 4 HOH A 18 499 499 HOH HOH . E 4 HOH A 19 500 500 HOH HOH . E 4 HOH A 20 501 501 HOH HOH . E 4 HOH A 21 502 502 HOH HOH . E 4 HOH A 22 503 503 HOH HOH . E 4 HOH A 23 504 504 HOH HOH . E 4 HOH A 24 505 505 HOH HOH . E 4 HOH A 25 506 506 HOH HOH . E 4 HOH A 26 507 507 HOH HOH . E 4 HOH A 27 508 508 HOH HOH . E 4 HOH A 28 509 509 HOH HOH . E 4 HOH A 29 510 510 HOH HOH . E 4 HOH A 30 511 511 HOH HOH . E 4 HOH A 31 512 512 HOH HOH . E 4 HOH A 32 513 513 HOH HOH . E 4 HOH A 33 514 514 HOH HOH . E 4 HOH A 34 515 515 HOH HOH . E 4 HOH A 35 516 516 HOH HOH . E 4 HOH A 36 517 517 HOH HOH . E 4 HOH A 37 518 518 HOH HOH . E 4 HOH A 38 519 519 HOH HOH . E 4 HOH A 39 520 520 HOH HOH . E 4 HOH A 40 521 521 HOH HOH . E 4 HOH A 41 522 522 HOH HOH . E 4 HOH A 42 523 523 HOH HOH . E 4 HOH A 43 524 524 HOH HOH . E 4 HOH A 44 525 525 HOH HOH . E 4 HOH A 45 526 526 HOH HOH . E 4 HOH A 46 527 527 HOH HOH . E 4 HOH A 47 528 528 HOH HOH . E 4 HOH A 48 529 529 HOH HOH . E 4 HOH A 49 530 530 HOH HOH . E 4 HOH A 50 531 531 HOH HOH . E 4 HOH A 51 532 532 HOH HOH . E 4 HOH A 52 533 533 HOH HOH . E 4 HOH A 53 534 534 HOH HOH . E 4 HOH A 54 535 535 HOH HOH . E 4 HOH A 55 536 536 HOH HOH . E 4 HOH A 56 537 537 HOH HOH . E 4 HOH A 57 538 538 HOH HOH . E 4 HOH A 58 539 539 HOH HOH . E 4 HOH A 59 540 540 HOH HOH . E 4 HOH A 60 541 541 HOH HOH . E 4 HOH A 61 542 542 HOH HOH . E 4 HOH A 62 543 543 HOH HOH . E 4 HOH A 63 544 544 HOH HOH . E 4 HOH A 64 545 545 HOH HOH . E 4 HOH A 65 546 546 HOH HOH . E 4 HOH A 66 547 547 HOH HOH . E 4 HOH A 67 548 548 HOH HOH . E 4 HOH A 68 549 549 HOH HOH . E 4 HOH A 69 550 550 HOH HOH . E 4 HOH A 70 551 551 HOH HOH . E 4 HOH A 71 552 552 HOH HOH . E 4 HOH A 72 553 553 HOH HOH . E 4 HOH A 73 554 554 HOH HOH . E 4 HOH A 74 555 555 HOH HOH . E 4 HOH A 75 556 556 HOH HOH . E 4 HOH A 76 557 557 HOH HOH . E 4 HOH A 77 558 558 HOH HOH . E 4 HOH A 78 559 559 HOH HOH . E 4 HOH A 79 560 560 HOH HOH . E 4 HOH A 80 561 561 HOH HOH . E 4 HOH A 81 562 562 HOH HOH . E 4 HOH A 82 563 563 HOH HOH . E 4 HOH A 83 564 564 HOH HOH . E 4 HOH A 84 565 565 HOH HOH . E 4 HOH A 85 566 566 HOH HOH . E 4 HOH A 86 567 567 HOH HOH . E 4 HOH A 87 568 568 HOH HOH . E 4 HOH A 88 569 569 HOH HOH . E 4 HOH A 89 570 570 HOH HOH . E 4 HOH A 90 571 571 HOH HOH . E 4 HOH A 91 572 572 HOH HOH . E 4 HOH A 92 573 573 HOH HOH . F 4 HOH B 1 482 482 HOH HOH . F 4 HOH B 2 483 483 HOH HOH . F 4 HOH B 3 484 484 HOH HOH . F 4 HOH B 4 485 485 HOH HOH . F 4 HOH B 5 486 486 HOH HOH . F 4 HOH B 6 487 487 HOH HOH . F 4 HOH B 7 488 488 HOH HOH . F 4 HOH B 8 489 489 HOH HOH . F 4 HOH B 9 490 490 HOH HOH . F 4 HOH B 10 491 491 HOH HOH . F 4 HOH B 11 492 492 HOH HOH . F 4 HOH B 12 493 493 HOH HOH . F 4 HOH B 13 494 494 HOH HOH . F 4 HOH B 14 495 495 HOH HOH . F 4 HOH B 15 496 496 HOH HOH . F 4 HOH B 16 497 497 HOH HOH . F 4 HOH B 17 498 498 HOH HOH . F 4 HOH B 18 499 499 HOH HOH . F 4 HOH B 19 500 500 HOH HOH . F 4 HOH B 20 501 501 HOH HOH . F 4 HOH B 21 502 502 HOH HOH . F 4 HOH B 22 503 503 HOH HOH . F 4 HOH B 23 504 504 HOH HOH . F 4 HOH B 24 505 505 HOH HOH . F 4 HOH B 25 506 506 HOH HOH . F 4 HOH B 26 507 507 HOH HOH . F 4 HOH B 27 508 508 HOH HOH . F 4 HOH B 28 509 509 HOH HOH . F 4 HOH B 29 510 510 HOH HOH . F 4 HOH B 30 511 511 HOH HOH . F 4 HOH B 31 512 512 HOH HOH . F 4 HOH B 32 513 513 HOH HOH . F 4 HOH B 33 514 514 HOH HOH . F 4 HOH B 34 515 515 HOH HOH . F 4 HOH B 35 516 516 HOH HOH . F 4 HOH B 36 517 517 HOH HOH . F 4 HOH B 37 518 518 HOH HOH . F 4 HOH B 38 519 519 HOH HOH . F 4 HOH B 39 520 520 HOH HOH . F 4 HOH B 40 521 521 HOH HOH . F 4 HOH B 41 522 522 HOH HOH . F 4 HOH B 42 523 523 HOH HOH . F 4 HOH B 43 524 524 HOH HOH . F 4 HOH B 44 525 525 HOH HOH . F 4 HOH B 45 526 526 HOH HOH . F 4 HOH B 46 527 527 HOH HOH . F 4 HOH B 47 528 528 HOH HOH . F 4 HOH B 48 529 529 HOH HOH . F 4 HOH B 49 530 530 HOH HOH . F 4 HOH B 50 531 531 HOH HOH . F 4 HOH B 51 532 532 HOH HOH . F 4 HOH B 52 533 533 HOH HOH . F 4 HOH B 53 534 534 HOH HOH . F 4 HOH B 54 535 535 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 B94 . . . D 3 -12.476 40.033 15.925 1 35.95 ? C12 B94 481 A 1 HETATM 2 C C13 B94 . . . D 3 -11.612 40.023 14.717 1 35.46 ? C13 B94 481 A 1 HETATM 3 C C14 B94 . . . D 3 -11.704 39.092 13.761 1 35.47 ? C14 B94 481 A 1 HETATM 4 C C15 B94 . . . D 3 -12.671 37.953 13.777 1 34.17 ? C15 B94 481 A 1 HETATM 5 C C16 B94 . . . D 3 -11.94 36.626 13.627 1 32.36 ? C16 B94 481 A 1 HETATM 6 N N29 B94 . . . D 3 -13.504 38.034 14.962 1 35.07 ? N29 B94 481 A 1 HETATM 7 N N30 B94 . . . D 3 -13.007 38.71 16.119 1 35.64 ? N30 B94 481 A 1 HETATM 8 C C18 B94 . . . D 3 -11.903 35.792 14.897 1 30.74 ? C18 B94 481 A 1 HETATM 9 N N5 B94 . . . D 3 -11.153 34.571 14.715 1 27.63 ? N5 B94 481 A 1 HETATM 10 C C19 B94 . . . D 3 -10.011 34.303 15.447 1 27.02 ? C19 B94 481 A 1 HETATM 11 C C20 B94 . . . D 3 -9.401 32.989 15.087 1 24.67 ? C20 B94 481 A 1 HETATM 12 O O9 B94 . . . D 3 -9.5 35.037 16.275 1 26.55 ? O9 B94 481 A 1 HETATM 13 C C21 B94 . . . D 3 -9.692 31.831 15.99 1 23.94 ? C21 B94 481 A 1 HETATM 14 C C22 B94 . . . D 3 -10.521 30.821 15.551 1 23.31 ? C22 B94 481 A 1 HETATM 15 C C23 B94 . . . D 3 -10.786 29.732 16.36 1 24.09 ? C23 B94 481 A 1 HETATM 16 C C24 B94 . . . D 3 -10.227 29.649 17.615 1 24.12 ? C24 B94 481 A 1 HETATM 17 C C25 B94 . . . D 3 -9.397 30.652 18.069 1 23.92 ? C25 B94 481 A 1 HETATM 18 C C26 B94 . . . D 3 -9.133 31.737 17.25 1 24.43 ? C26 B94 481 A 1 HETATM 19 CL CL1 B94 . . . D 3 -10.574 28.281 18.6 1 23.49 ? CL1 B94 481 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #