data_3KK6 # _model_server_result.job_id XIOGwYUxAnc4KwhVcpdydg _model_server_result.datetime_utc '2024-11-24 01:01:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":900}' # _entry.id 3KK6 # _exptl.entry_id 3KK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KK6 _cell.length_a 181.035 _cell.length_b 181.035 _cell.length_c 102.698 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BMA MAN C1 O1 . O4 HO4 . sing 4 ? 2 5 4 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 3 2 1 NDG NAG C1 O1 . O4 HO4 . sing 6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 4 3 2 MAN NAG C1 O1 . O4 HO4 . sing 8 ? 4 4 3 BMA MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 671 NAG 2 n C NAG 2 C 2 NAG A 672 NAG 2 n C MAN 3 C 3 MAN A 673 MAN 2 n C BMA 4 C 4 BMA A 674 BMA 2 n C MAN 5 C 5 MAN A 675 MAN 3 n D NAG 1 D 1 NAG A 681 NAG 3 n D NDG 2 D 2 NDG A 682 NDG 3 n E NAG 1 E 1 NAG B 1661 NAG 3 n E NDG 2 E 2 NDG B 1662 NDG 4 n F NAG 1 F 1 NAG B 1671 NAG 4 n F NAG 2 F 2 NAG B 1672 NAG 4 n F MAN 3 F 3 MAN B 1673 MAN 4 n F BMA 4 F 4 BMA B 1674 BMA 3 n G NAG 1 G 1 NAG B 1681 NAG 3 n G NDG 2 G 2 NDG B 1682 NDG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 36 1_555 A SG CYS 16 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 6 A CYS 37 1_555 A SG CYS 128 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 10 A CYS 41 1_555 A SG CYS 26 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 28 A CYS 59 1_555 A SG CYS 38 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 538 A CYS 569 1_555 A SG CYS 544 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 5 B CYS 36 1_555 B SG CYS 16 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 B SG CYS 6 B CYS 37 1_555 B SG CYS 128 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.555 ? disulf ? disulf8 B SG CYS 10 B CYS 41 1_555 B SG CYS 26 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 28 B CYS 59 1_555 B SG CYS 38 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 538 B CYS 569 1_555 B SG CYS 544 B CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 C O4 MAN . C MAN 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 C O3 BMA . C BMA 4 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 D O4 NAG . D NAG 1 1_555 D C1 NDG . D NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale6 E O4 NAG . E NAG 1 1_555 E C1 NDG . E NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale7 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale8 F O4 NAG . F NAG 2 1_555 F C1 MAN . F MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 F O6 MAN . F MAN 3 1_555 F C1 BMA . F BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale10 G O4 NAG . G NAG 1 1_555 G C1 NDG . G NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 197 n n CAC OA1 FLC doub 198 n n CAC OA2 FLC sing 199 n n CA CB FLC sing 200 n n CA HA1 FLC sing 201 n n CA HA2 FLC sing 202 n n CB CBC FLC sing 203 n n CB CG FLC sing 204 n n CB OHB FLC sing 205 n n CBC OB1 FLC doub 206 n n CBC OB2 FLC sing 207 n n CG CGC FLC sing 208 n n CG HG1 FLC sing 209 n n CG HG2 FLC sing 210 n n CGC OG1 FLC doub 211 n n CGC OG2 FLC sing 212 n n OHB HOB FLC sing 213 n n # _atom_sites.entry_id 3KK6 _atom_sites.fract_transf_matrix[1][1] 0.005524 _atom_sites.fract_transf_matrix[1][2] 0.003189 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006378 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 HEM A 1 601 601 HEM HEM . I 6 CEL A 1 701 701 CEL CEL . J 7 BOG A 1 751 751 BOG BOG . K 7 BOG A 1 754 754 BOG BOG . L 8 FLC A 1 900 900 FLC FLC . M 5 HEM B 1 601 601 HEM HEM . N 6 CEL B 1 1701 1701 CEL CEL . O 7 BOG B 1 1751 1751 BOG BOG . P 7 BOG B 1 1752 1752 BOG BOG . Q 9 HOH A 1 3 3 HOH HOH . Q 9 HOH A 2 8 8 HOH HOH . Q 9 HOH A 3 10 10 HOH HOH . Q 9 HOH A 4 11 11 HOH HOH . Q 9 HOH A 5 14 14 HOH HOH . Q 9 HOH A 6 18 18 HOH HOH . Q 9 HOH A 7 19 19 HOH HOH . Q 9 HOH A 8 21 21 HOH HOH . Q 9 HOH A 9 23 23 HOH HOH . Q 9 HOH A 10 24 24 HOH HOH . Q 9 HOH A 11 27 27 HOH HOH . Q 9 HOH A 12 28 28 HOH HOH . Q 9 HOH A 13 585 585 HOH HOH . Q 9 HOH A 14 586 586 HOH HOH . Q 9 HOH A 15 587 587 HOH HOH . Q 9 HOH A 16 588 588 HOH HOH . Q 9 HOH A 17 589 589 HOH HOH . Q 9 HOH A 18 590 590 HOH HOH . Q 9 HOH A 19 591 591 HOH HOH . Q 9 HOH A 20 592 592 HOH HOH . Q 9 HOH A 21 593 593 HOH HOH . Q 9 HOH A 22 594 594 HOH HOH . Q 9 HOH A 23 595 595 HOH HOH . Q 9 HOH A 24 596 596 HOH HOH . Q 9 HOH A 25 597 597 HOH HOH . Q 9 HOH A 26 598 598 HOH HOH . Q 9 HOH A 27 599 599 HOH HOH . Q 9 HOH A 28 600 600 HOH HOH . Q 9 HOH A 29 602 602 HOH HOH . Q 9 HOH A 30 603 603 HOH HOH . Q 9 HOH A 31 604 604 HOH HOH . Q 9 HOH A 32 605 605 HOH HOH . Q 9 HOH A 33 606 606 HOH HOH . Q 9 HOH A 34 607 607 HOH HOH . Q 9 HOH A 35 608 608 HOH HOH . Q 9 HOH A 36 609 609 HOH HOH . Q 9 HOH A 37 610 610 HOH HOH . Q 9 HOH A 38 611 611 HOH HOH . Q 9 HOH A 39 612 612 HOH HOH . Q 9 HOH A 40 613 613 HOH HOH . Q 9 HOH A 41 614 614 HOH HOH . Q 9 HOH A 42 615 615 HOH HOH . Q 9 HOH A 43 616 616 HOH HOH . Q 9 HOH A 44 617 617 HOH HOH . Q 9 HOH A 45 618 618 HOH HOH . Q 9 HOH A 46 619 619 HOH HOH . Q 9 HOH A 47 620 620 HOH HOH . Q 9 HOH A 48 621 621 HOH HOH . Q 9 HOH A 49 622 622 HOH HOH . Q 9 HOH A 50 623 623 HOH HOH . Q 9 HOH A 51 624 624 HOH HOH . Q 9 HOH A 52 625 625 HOH HOH . Q 9 HOH A 53 626 626 HOH HOH . Q 9 HOH A 54 627 627 HOH HOH . Q 9 HOH A 55 628 628 HOH HOH . R 9 HOH B 1 1 1 HOH HOH . R 9 HOH B 2 2 2 HOH HOH . R 9 HOH B 3 4 4 HOH HOH . R 9 HOH B 4 5 5 HOH HOH . R 9 HOH B 5 7 7 HOH HOH . R 9 HOH B 6 17 17 HOH HOH . R 9 HOH B 7 20 20 HOH HOH . R 9 HOH B 8 22 22 HOH HOH . R 9 HOH B 9 25 25 HOH HOH . R 9 HOH B 10 26 26 HOH HOH . R 9 HOH B 11 29 29 HOH HOH . R 9 HOH B 12 31 31 HOH HOH . R 9 HOH B 13 586 586 HOH HOH . R 9 HOH B 14 587 587 HOH HOH . R 9 HOH B 15 588 588 HOH HOH . R 9 HOH B 16 589 589 HOH HOH . R 9 HOH B 17 590 590 HOH HOH . R 9 HOH B 18 591 591 HOH HOH . R 9 HOH B 19 592 592 HOH HOH . R 9 HOH B 20 593 593 HOH HOH . R 9 HOH B 21 594 594 HOH HOH . R 9 HOH B 22 595 595 HOH HOH . R 9 HOH B 23 596 596 HOH HOH . R 9 HOH B 24 597 597 HOH HOH . R 9 HOH B 25 598 598 HOH HOH . R 9 HOH B 26 599 599 HOH HOH . R 9 HOH B 27 600 600 HOH HOH . R 9 HOH B 28 602 602 HOH HOH . R 9 HOH B 29 603 603 HOH HOH . R 9 HOH B 30 604 604 HOH HOH . R 9 HOH B 31 605 605 HOH HOH . R 9 HOH B 32 606 606 HOH HOH . R 9 HOH B 33 607 607 HOH HOH . R 9 HOH B 34 608 608 HOH HOH . R 9 HOH B 35 609 609 HOH HOH . R 9 HOH B 36 610 610 HOH HOH . R 9 HOH B 37 611 611 HOH HOH . R 9 HOH B 38 612 612 HOH HOH . R 9 HOH B 39 613 613 HOH HOH . R 9 HOH B 40 614 614 HOH HOH . R 9 HOH B 41 615 615 HOH HOH . R 9 HOH B 42 616 616 HOH HOH . R 9 HOH B 43 617 617 HOH HOH . R 9 HOH B 44 618 618 HOH HOH . R 9 HOH B 45 619 619 HOH HOH . R 9 HOH B 46 620 620 HOH HOH . R 9 HOH B 47 621 621 HOH HOH . R 9 HOH B 48 622 622 HOH HOH . R 9 HOH B 49 623 623 HOH HOH . R 9 HOH B 50 624 624 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . L 8 -39.125 67.327 -2.651 1 174.1 ? CAC FLC 900 A 1 HETATM 2 C CA FLC . . . L 8 -40.616 67.595 -2.556 1 168.32 ? CA FLC 900 A 1 HETATM 3 C CB FLC . . . L 8 -41.205 66.516 -1.698 1 159.74 ? CB FLC 900 A 1 HETATM 4 C CBC FLC . . . L 8 -42.291 65.864 -2.418 1 163.27 ? CBC FLC 900 A 1 HETATM 5 C CG FLC . . . L 8 -41.692 66.975 -0.325 1 143.05 ? CG FLC 900 A 1 HETATM 6 C CGC FLC . . . L 8 -41.906 65.845 0.656 1 123.09 ? CGC FLC 900 A 1 HETATM 7 O OA1 FLC . . . L 8 -38.658 66.99 -3.727 1 174.06 ? OA1 FLC 900 A 1 HETATM 8 O OA2 FLC . . . L 8 -38.454 67.613 -1.674 1 180.55 ? OA2 FLC 900 A 1 HETATM 9 O OB1 FLC . . . L 8 -41.952 65.327 -3.458 1 154.48 ? OB1 FLC 900 A 1 HETATM 10 O OB2 FLC . . . L 8 -43.351 65.797 -1.835 0.88 172.38 ? OB2 FLC 900 A 1 HETATM 11 O OG1 FLC . . . L 8 -42.636 66.037 1.629 1 102.7 ? OG1 FLC 900 A 1 HETATM 12 O OG2 FLC . . . L 8 -40.958 65.114 0.738 1 124.21 ? OG2 FLC 900 A 1 HETATM 13 O OHB FLC . . . L 8 -40.211 65.586 -1.629 1 161.53 ? OHB FLC 900 A 1 HETATM 14 H HA1 FLC . . . L 8 -41.075 67.598 -3.556 0 61.02 ? HA1 FLC 900 A 1 HETATM 15 H HA2 FLC . . . L 8 -40.792 68.574 -2.105 0 61.02 ? HA2 FLC 900 A 1 HETATM 16 H HG1 FLC . . . L 8 -42.645 67.5 -0.446 0 61.02 ? HG1 FLC 900 A 1 HETATM 17 H HG2 FLC . . . L 8 -40.962 67.693 0.074 0 61.02 ? HG2 FLC 900 A 1 HETATM 18 H HOB FLC . . . L 8 -40.564 64.673 -1.493 0 61.02 ? HOB FLC 900 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 533 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 18 #