data_3KKC # _model_server_result.job_id p5sf2TjJH0Ys3PVgKTLyiw _model_server_result.datetime_utc '2025-03-26 20:29:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kkc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":212}' # _entry.id 3KKC # _exptl.entry_id 3KKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.23 _cell.angle_gamma 90 _cell.entry_id 3KKC _cell.length_a 44.351 _cell.length_b 128.681 _cell.length_c 74.566 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,U,V 1 1 C,D,M,N,O,P,Q,R,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 R N N ? 3 S N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N VAL 5 A VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C LYS 161 A LYS 158 1_555 A N MSE 162 A MSE 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 162 A MSE 159 1_555 A N THR 163 A THR 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C THR 173 A THR 170 1_555 A N MSE 174 A MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 174 A MSE 171 1_555 A N VAL 175 A VAL 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 B C MSE 4 B MSE 1 1_555 B N VAL 5 B VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 B C LYS 161 B LYS 158 1_555 B N MSE 162 B MSE 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 B C MSE 162 B MSE 159 1_555 B N THR 163 B THR 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C THR 173 B THR 170 1_555 B N MSE 174 B MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale12 B C MSE 174 B MSE 171 1_555 B N VAL 175 B VAL 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 C C ALA 3 C ALA 0 1_555 C N MSE 4 C MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 C C MSE 4 C MSE 1 1_555 C N VAL 5 C VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 C C LYS 161 C LYS 158 1_555 C N MSE 162 C MSE 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 C C MSE 162 C MSE 159 1_555 C N THR 163 C THR 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 C C THR 173 C THR 170 1_555 C N MSE 174 C MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale18 C C MSE 174 C MSE 171 1_555 C N VAL 175 C VAL 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 D C ALA 3 D ALA 0 1_555 D N MSE 4 D MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale20 D C MSE 4 D MSE 1 1_555 D N VAL 5 D VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 D C LYS 161 D LYS 158 1_555 D N MSE 162 D MSE 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 D C MSE 162 D MSE 159 1_555 D N THR 163 D THR 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale23 D C THR 173 D THR 170 1_555 D N MSE 174 D MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale24 D C MSE 174 D MSE 171 1_555 D N VAL 175 D VAL 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A NE2 HIS 70 A HIS 67 1_555 E NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 A NE2 HIS 86 A HIS 83 1_555 E NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc3 A NE2 HIS 90 A HIS 87 1_555 E NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc4 E NI NI . A NI 201 1_555 G N1 IMD . A IMD 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 B NE2 HIS 70 B HIS 67 1_555 I NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc6 B NE2 HIS 86 B HIS 83 1_555 I NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc7 B NE2 HIS 90 B HIS 87 1_555 I NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc8 I NI NI . B NI 201 1_555 J N3 IMD . B IMD 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc9 I NI NI . B NI 201 1_555 L N3 IMD . B IMD 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc10 C NE2 HIS 70 C HIS 67 1_555 M NI NI . C NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc11 C NE2 HIS 86 C HIS 83 1_555 M NI NI . C NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc12 C NE2 HIS 90 C HIS 87 1_555 M NI NI . C NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc13 M NI NI . C NI 201 1_555 N N3 IMD . C IMD 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc14 M NI NI . C NI 201 1_555 P N3 IMD . C IMD 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc15 D NE2 HIS 70 D HIS 67 1_555 Q NI NI . D NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc16 D NE2 HIS 86 D HIS 83 1_555 Q NI NI . D NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc17 D NE2 HIS 90 D HIS 87 1_555 Q NI NI . D NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc18 Q NI NI . D NI 201 1_555 S N1 IMD . D IMD 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 173 n y N1 C5 IMD sing 174 n y N1 HN1 IMD sing 175 n n C2 N3 IMD doub 176 n y C2 H2 IMD sing 177 n n N3 C4 IMD sing 178 n y N3 HN3 IMD sing 179 n n C4 C5 IMD doub 180 n y C4 H4 IMD sing 181 n n C5 H5 IMD sing 182 n n # _atom_sites.entry_id 3KKC _atom_sites.fract_transf_matrix[1][1] 0.022547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005302 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NI A 1 201 201 NI NI . F 3 IMD A 1 211 211 IMD IMD . G 3 IMD A 1 212 212 IMD IMD . H 3 IMD A 1 213 213 IMD IMD . I 2 NI B 1 201 201 NI NI . J 3 IMD B 1 211 211 IMD IMD . K 3 IMD B 1 212 212 IMD IMD . L 3 IMD B 1 213 213 IMD IMD . M 2 NI C 1 201 201 NI NI . N 3 IMD C 1 211 211 IMD IMD . O 3 IMD C 1 212 212 IMD IMD . P 3 IMD C 1 213 213 IMD IMD . Q 2 NI D 1 201 201 NI NI . R 3 IMD D 1 211 211 IMD IMD . S 3 IMD D 1 212 212 IMD IMD . T 3 IMD D 1 213 213 IMD IMD . U 4 HOH A 1 175 11 HOH HOH . V 4 HOH B 1 175 2 HOH HOH . V 4 HOH B 2 176 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . G 3 20.959 79.129 30.956 0.7 89.91 ? N1 IMD 212 A 1 HETATM 2 C C2 IMD . . . G 3 21.954 79.158 30.042 0.7 90.26 ? C2 IMD 212 A 1 HETATM 3 N N3 IMD . . . G 3 22.522 80.387 30.059 0.7 90.77 ? N3 IMD 212 A 1 HETATM 4 C C4 IMD . . . G 3 21.879 81.135 30.985 0.7 93.72 ? C4 IMD 212 A 1 HETATM 5 C C5 IMD . . . G 3 20.885 80.339 31.547 0.7 93.32 ? C5 IMD 212 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #