data_3KKD # _model_server_result.job_id 8dx6r9aljpf0tAv4o2X97w _model_server_result.datetime_utc '2025-02-05 12:52:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kkd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":240}' # _entry.id 3KKD # _exptl.entry_id 3KKD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.01 _cell.angle_gamma 90 _cell.entry_id 3KKD _cell.length_a 157.321 _cell.length_b 82.879 _cell.length_c 46.618 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,I 1 1,2 B,C,E,F,G,H,J,K 2 1 A,B,C,D,E,F,G,H,I,J,K 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 44 A ALA 44 1_555 A N MSE 45 A MSE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 45 A MSE 45 1_555 A N ARG 46 A ARG 46 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.338 ? covale ? covale3 A C MSE 45 A MSE 45 1_555 A N ARG 46 A ARG 46 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C GLU 111 A GLU 111 1_555 A N MSE 112 A MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C MSE 112 A MSE 112 1_555 A N ALA 113 A ALA 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C GLN 205 A GLN 205 1_555 A N MSE 206 A MSE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C MSE 206 A MSE 206 1_555 A N GLU 207 A GLU 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale8 A C GLU 222 A GLU 222 1_555 A N MSE 223 A MSE 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C MSE 223 A MSE 223 1_555 A N ARG 224 A ARG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.29 ? covale ? covale10 A C VAL 234 A VAL 234 1_555 A N MSE 235 A MSE 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale11 A C MSE 235 A MSE 235 1_555 A N GLY 236 A GLY 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C ALA 44 B ALA 44 1_555 B N MSE 45 B MSE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale13 B C MSE 45 B MSE 45 1_555 B N ARG 46 B ARG 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 B C GLU 111 B GLU 111 1_555 B N MSE 112 B MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale15 B C MSE 112 B MSE 112 1_555 B N ALA 113 B ALA 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 B C GLN 205 B GLN 205 1_555 B N MSE 206 B MSE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale17 B C MSE 206 B MSE 206 1_555 B N GLU 207 B GLU 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 B C GLU 222 B GLU 222 1_555 B N MSE 223 B MSE 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 B C MSE 223 B MSE 223 1_555 B N ARG 224 B ARG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 B C VAL 234 B VAL 234 1_555 B N MSE 235 B MSE 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale21 B C MSE 235 B MSE 235 1_555 B N GLY 236 B GLY 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale22 C C ALA 44 C ALA 44 1_555 C N MSE 45 C MSE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale23 C C MSE 45 C MSE 45 1_555 C N ARG 46 C ARG 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale24 C C GLU 111 C GLU 111 1_555 C N MSE 112 C MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale25 C C MSE 112 C MSE 112 1_555 C N ALA 113 C ALA 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale26 C C GLN 205 C GLN 205 1_555 C N MSE 206 C MSE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale27 C C MSE 206 C MSE 206 1_555 C N GLU 207 C GLU 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale28 C C GLU 222 C GLU 222 1_555 C N MSE 223 C MSE 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale29 C C MSE 223 C MSE 223 1_555 C N ARG 224 C ARG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale30 C C VAL 234 C VAL 234 1_555 C N MSE 235 C MSE 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale31 C C MSE 235 C MSE 235 1_555 C N GLY 236 C GLY 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 467 n n C1 C2 PGE sing 468 n n C1 H1 PGE sing 469 n n C1 H12 PGE sing 470 n n O1 HO1 PGE sing 471 n n C2 O2 PGE sing 472 n n C2 H2 PGE sing 473 n n C2 H22 PGE sing 474 n n O2 C3 PGE sing 475 n n C3 C4 PGE sing 476 n n C3 H3 PGE sing 477 n n C3 H32 PGE sing 478 n n C4 O3 PGE sing 479 n n C4 H4 PGE sing 480 n n C4 H42 PGE sing 481 n n O4 C6 PGE sing 482 n n O4 HO4 PGE sing 483 n n C6 C5 PGE sing 484 n n C6 H6 PGE sing 485 n n C6 H62 PGE sing 486 n n C5 O3 PGE sing 487 n n C5 H5 PGE sing 488 n n C5 H52 PGE sing 489 n n # _atom_sites.entry_id 3KKD _atom_sites.fract_transf_matrix[1][1] 0.006356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PGE A 1 238 5 PGE PGE . E 3 SO4 B 1 238 1 SO4 SO4 . F 3 SO4 B 1 239 2 SO4 SO4 . G 2 PGE B 1 240 4 PGE PGE . H 4 15P C 1 238 3 15P 15P . I 5 HOH A 1 239 3 HOH HOH . I 5 HOH A 2 240 4 HOH HOH . I 5 HOH A 3 241 5 HOH HOH . I 5 HOH A 4 242 6 HOH HOH . I 5 HOH A 5 243 7 HOH HOH . I 5 HOH A 6 244 8 HOH HOH . I 5 HOH A 7 245 10 HOH HOH . I 5 HOH A 8 246 13 HOH HOH . I 5 HOH A 9 247 17 HOH HOH . I 5 HOH A 10 248 20 HOH HOH . I 5 HOH A 11 249 21 HOH HOH . I 5 HOH A 12 250 30 HOH HOH . I 5 HOH A 13 251 31 HOH HOH . I 5 HOH A 14 252 32 HOH HOH . I 5 HOH A 15 253 34 HOH HOH . I 5 HOH A 16 254 38 HOH HOH . I 5 HOH A 17 255 39 HOH HOH . I 5 HOH A 18 256 40 HOH HOH . I 5 HOH A 19 257 42 HOH HOH . I 5 HOH A 20 258 43 HOH HOH . I 5 HOH A 21 259 45 HOH HOH . I 5 HOH A 22 260 46 HOH HOH . I 5 HOH A 23 261 48 HOH HOH . I 5 HOH A 24 262 50 HOH HOH . I 5 HOH A 25 263 51 HOH HOH . I 5 HOH A 26 264 53 HOH HOH . I 5 HOH A 27 265 57 HOH HOH . I 5 HOH A 28 266 58 HOH HOH . I 5 HOH A 29 267 74 HOH HOH . I 5 HOH A 30 268 75 HOH HOH . I 5 HOH A 31 269 85 HOH HOH . I 5 HOH A 32 270 86 HOH HOH . I 5 HOH A 33 271 87 HOH HOH . I 5 HOH A 34 272 93 HOH HOH . I 5 HOH A 35 273 94 HOH HOH . I 5 HOH A 36 274 97 HOH HOH . I 5 HOH A 37 275 98 HOH HOH . I 5 HOH A 38 276 99 HOH HOH . I 5 HOH A 39 277 100 HOH HOH . I 5 HOH A 40 278 101 HOH HOH . I 5 HOH A 41 279 102 HOH HOH . J 5 HOH B 1 241 11 HOH HOH . J 5 HOH B 2 242 15 HOH HOH . J 5 HOH B 3 243 23 HOH HOH . J 5 HOH B 4 244 25 HOH HOH . J 5 HOH B 5 245 27 HOH HOH . J 5 HOH B 6 246 29 HOH HOH . J 5 HOH B 7 247 35 HOH HOH . J 5 HOH B 8 248 41 HOH HOH . J 5 HOH B 9 249 44 HOH HOH . J 5 HOH B 10 250 49 HOH HOH . J 5 HOH B 11 251 55 HOH HOH . J 5 HOH B 12 252 56 HOH HOH . J 5 HOH B 13 253 59 HOH HOH . J 5 HOH B 14 254 64 HOH HOH . J 5 HOH B 15 255 67 HOH HOH . J 5 HOH B 16 256 77 HOH HOH . J 5 HOH B 17 257 80 HOH HOH . J 5 HOH B 18 258 88 HOH HOH . J 5 HOH B 19 259 91 HOH HOH . J 5 HOH B 20 260 95 HOH HOH . J 5 HOH B 21 261 96 HOH HOH . J 5 HOH B 22 262 103 HOH HOH . J 5 HOH B 23 263 104 HOH HOH . K 5 HOH C 1 239 1 HOH HOH . K 5 HOH C 2 240 2 HOH HOH . K 5 HOH C 3 241 12 HOH HOH . K 5 HOH C 4 242 14 HOH HOH . K 5 HOH C 5 243 16 HOH HOH . K 5 HOH C 6 244 18 HOH HOH . K 5 HOH C 7 245 19 HOH HOH . K 5 HOH C 8 246 22 HOH HOH . K 5 HOH C 9 247 24 HOH HOH . K 5 HOH C 10 248 26 HOH HOH . K 5 HOH C 11 249 28 HOH HOH . K 5 HOH C 12 250 33 HOH HOH . K 5 HOH C 13 251 36 HOH HOH . K 5 HOH C 14 252 37 HOH HOH . K 5 HOH C 15 253 47 HOH HOH . K 5 HOH C 16 254 52 HOH HOH . K 5 HOH C 17 255 54 HOH HOH . K 5 HOH C 18 256 61 HOH HOH . K 5 HOH C 19 257 62 HOH HOH . K 5 HOH C 20 258 63 HOH HOH . K 5 HOH C 21 259 65 HOH HOH . K 5 HOH C 22 260 66 HOH HOH . K 5 HOH C 23 261 69 HOH HOH . K 5 HOH C 24 262 71 HOH HOH . K 5 HOH C 25 263 76 HOH HOH . K 5 HOH C 26 264 84 HOH HOH . K 5 HOH C 27 265 89 HOH HOH . K 5 HOH C 28 266 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . G 2 10.164 60.158 -12.411 1 74.46 ? C1 PGE 240 B 1 HETATM 2 O O1 PGE . . . G 2 9.361 59.315 -11.591 1 74.35 ? O1 PGE 240 B 1 HETATM 3 C C2 PGE . . . G 2 11.566 59.568 -12.488 1 75.19 ? C2 PGE 240 B 1 HETATM 4 O O2 PGE . . . G 2 12.549 60.482 -11.998 1 76.18 ? O2 PGE 240 B 1 HETATM 5 C C3 PGE . . . G 2 13.846 59.888 -11.928 1 77.82 ? C3 PGE 240 B 1 HETATM 6 C C4 PGE . . . G 2 14.043 59.156 -10.598 1 78.96 ? C4 PGE 240 B 1 HETATM 7 O O4 PGE . . . G 2 18.414 58.129 -10.671 1 79.85 ? O4 PGE 240 B 1 HETATM 8 C C6 PGE . . . G 2 17.186 58.843 -10.424 1 79.61 ? C6 PGE 240 B 1 HETATM 9 C C5 PGE . . . G 2 16.065 57.953 -9.876 1 79.39 ? C5 PGE 240 B 1 HETATM 10 O O3 PGE . . . G 2 14.901 58.005 -10.724 1 79.61 ? O3 PGE 240 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #