data_3KKF # _model_server_result.job_id J7CTMcxTBWvU4yfhPrCGTQ _model_server_result.datetime_utc '2024-11-04 22:53:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kkf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 3KKF # _exptl.entry_id 3KKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KKF _cell.length_a 70.74 _cell.length_b 70.74 _cell.length_c 96.021 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 2 1,3,4,5,6,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 35.37 20.420879 32.007 3 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 35.37 -61.262637 0 4 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 70.74 0 0 5 'crystal symmetry operation' 10_545 y+2/3,x-2/3,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 70.74 -40.841758 32.007 6 'crystal symmetry operation' 11_445 x-y-1/3,-y-2/3,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 -40.841758 32.007 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 5 A ASN 31 1_555 A N MSE 6 A MSE 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale2 A C MSE 6 A MSE 32 1_555 A N VAL 7 A VAL 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale3 A C SER 33 A SER 59 1_555 A N MSE 34 A MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C MSE 34 A MSE 60 1_555 A N ARG 35 A ARG 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C ASP 85 A ASP 111 1_555 A N MSE 86 A MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale6 A C MSE 86 A MSE 112 1_555 A N VAL 87 A VAL 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C GLN 88 A GLN 114 1_555 A N MSE 89 A MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale8 A C MSE 89 A MSE 115 1_555 A N LEU 90 A LEU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C LYS 103 A LYS 129 1_555 A N MSE 104 A MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A C MSE 104 A MSE 130 1_555 A N LYS 105 A LYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? metalc ? metalc1 A O GLY 1 A GLY 0 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc2 A OD1 ASN 4 A ASN 30 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc3 A OD1 ASN 5 A ASN 31 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 A OD1 ASP 15 A ASP 41 1_555 B CA CA . A CA 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc5 A OD1 ASP 15 A ASP 41 1_555 B CA CA . A CA 201 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc6 A OE1 GLU 17 A GLU 43 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc7 A OE1 GLU 50 A GLU 76 1_555 B CA CA . A CA 201 3_655 ? A ? ? ? ? ? ? ? ? ? ? 3.02 ? metalc ? metalc8 A OE1 GLU 50 A GLU 76 1_555 B CA CA . A CA 201 3_655 ? B ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc9 A OE2 GLU 50 A GLU 76 1_555 B CA CA . A CA 201 3_655 ? A ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 A O ALA 62 A ALA 88 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc11 B CA CA . A CA 201 1_555 H O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc12 B CA CA . A CA 201 1_555 H O HOH . A HOH 395 2_545 ? ? ? ? B ? ? ? ? ? ? ? 2.573 ? metalc ? metalc13 B CA CA . A CA 201 1_555 H O HOH . A HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc14 C CA CA . A CA 202 1_555 H O HOH . A HOH 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc15 C CA CA . A CA 202 1_555 H O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 3KKF _atom_sites.fract_transf_matrix[1][1] 0.014136 _atom_sites.fract_transf_matrix[1][2] 0.008162 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 201 CA CA . C 2 CA A 1 202 202 CA CA . D 3 ACT A 1 203 203 ACT ACT . E 4 EDO A 1 204 204 EDO EDO . F 5 P6G A 1 205 205 P6G P6G . G 5 P6G A 1 206 206 P6G P6G . H 6 HOH A 1 207 207 HOH HOH . H 6 HOH A 2 208 208 HOH HOH . H 6 HOH A 3 209 209 HOH HOH . H 6 HOH A 4 210 210 HOH HOH . H 6 HOH A 5 211 211 HOH HOH . H 6 HOH A 6 212 212 HOH HOH . H 6 HOH A 7 213 213 HOH HOH . H 6 HOH A 8 214 214 HOH HOH . H 6 HOH A 9 215 215 HOH HOH . H 6 HOH A 10 216 216 HOH HOH . H 6 HOH A 11 217 217 HOH HOH . H 6 HOH A 12 218 218 HOH HOH . H 6 HOH A 13 219 219 HOH HOH . H 6 HOH A 14 220 220 HOH HOH . H 6 HOH A 15 221 221 HOH HOH . H 6 HOH A 16 222 222 HOH HOH . H 6 HOH A 17 223 223 HOH HOH . H 6 HOH A 18 224 224 HOH HOH . H 6 HOH A 19 225 225 HOH HOH . H 6 HOH A 20 226 226 HOH HOH . H 6 HOH A 21 227 227 HOH HOH . H 6 HOH A 22 332 332 HOH HOH . H 6 HOH A 23 333 333 HOH HOH . H 6 HOH A 24 334 334 HOH HOH . H 6 HOH A 25 335 335 HOH HOH . H 6 HOH A 26 336 336 HOH HOH . H 6 HOH A 27 337 337 HOH HOH . H 6 HOH A 28 338 338 HOH HOH . H 6 HOH A 29 339 339 HOH HOH . H 6 HOH A 30 340 340 HOH HOH . H 6 HOH A 31 341 341 HOH HOH . H 6 HOH A 32 342 342 HOH HOH . H 6 HOH A 33 343 343 HOH HOH . H 6 HOH A 34 344 344 HOH HOH . H 6 HOH A 35 345 345 HOH HOH . H 6 HOH A 36 346 346 HOH HOH . H 6 HOH A 37 347 347 HOH HOH . H 6 HOH A 38 348 348 HOH HOH . H 6 HOH A 39 349 349 HOH HOH . H 6 HOH A 40 350 350 HOH HOH . H 6 HOH A 41 351 351 HOH HOH . H 6 HOH A 42 352 352 HOH HOH . H 6 HOH A 43 353 353 HOH HOH . H 6 HOH A 44 354 354 HOH HOH . H 6 HOH A 45 355 355 HOH HOH . H 6 HOH A 46 356 356 HOH HOH . H 6 HOH A 47 357 357 HOH HOH . H 6 HOH A 48 358 358 HOH HOH . H 6 HOH A 49 359 359 HOH HOH . H 6 HOH A 50 360 360 HOH HOH . H 6 HOH A 51 361 361 HOH HOH . H 6 HOH A 52 362 362 HOH HOH . H 6 HOH A 53 363 363 HOH HOH . H 6 HOH A 54 364 364 HOH HOH . H 6 HOH A 55 365 365 HOH HOH . H 6 HOH A 56 366 366 HOH HOH . H 6 HOH A 57 367 367 HOH HOH . H 6 HOH A 58 368 368 HOH HOH . H 6 HOH A 59 369 369 HOH HOH . H 6 HOH A 60 370 370 HOH HOH . H 6 HOH A 61 371 371 HOH HOH . H 6 HOH A 62 372 372 HOH HOH . H 6 HOH A 63 373 373 HOH HOH . H 6 HOH A 64 374 374 HOH HOH . H 6 HOH A 65 375 375 HOH HOH . H 6 HOH A 66 376 376 HOH HOH . H 6 HOH A 67 377 377 HOH HOH . H 6 HOH A 68 378 378 HOH HOH . H 6 HOH A 69 379 379 HOH HOH . H 6 HOH A 70 380 380 HOH HOH . H 6 HOH A 71 381 381 HOH HOH . H 6 HOH A 72 382 382 HOH HOH . H 6 HOH A 73 383 383 HOH HOH . H 6 HOH A 74 384 384 HOH HOH . H 6 HOH A 75 385 385 HOH HOH . H 6 HOH A 76 386 386 HOH HOH . H 6 HOH A 77 387 387 HOH HOH . H 6 HOH A 78 388 388 HOH HOH . H 6 HOH A 79 389 389 HOH HOH . H 6 HOH A 80 390 390 HOH HOH . H 6 HOH A 81 391 391 HOH HOH . H 6 HOH A 82 392 392 HOH HOH . H 6 HOH A 83 393 393 HOH HOH . H 6 HOH A 84 394 394 HOH HOH . H 6 HOH A 85 395 395 HOH HOH . H 6 HOH A 86 396 396 HOH HOH . H 6 HOH A 87 397 397 HOH HOH . H 6 HOH A 88 398 398 HOH HOH . H 6 HOH A 89 399 399 HOH HOH . H 6 HOH A 90 400 400 HOH HOH . H 6 HOH A 91 401 401 HOH HOH . H 6 HOH A 92 402 402 HOH HOH . H 6 HOH A 93 403 403 HOH HOH . H 6 HOH A 94 404 404 HOH HOH . H 6 HOH A 95 405 405 HOH HOH . H 6 HOH A 96 406 406 HOH HOH . H 6 HOH A 97 407 407 HOH HOH . H 6 HOH A 98 408 408 HOH HOH . H 6 HOH A 99 409 409 HOH HOH . H 6 HOH A 100 410 410 HOH HOH . H 6 HOH A 101 411 411 HOH HOH . H 6 HOH A 102 412 412 HOH HOH . H 6 HOH A 103 413 413 HOH HOH . H 6 HOH A 104 414 414 HOH HOH . H 6 HOH A 105 415 415 HOH HOH . H 6 HOH A 106 416 416 HOH HOH . H 6 HOH A 107 417 417 HOH HOH . H 6 HOH A 108 418 418 HOH HOH . H 6 HOH A 109 419 419 HOH HOH . H 6 HOH A 110 420 420 HOH HOH . H 6 HOH A 111 421 421 HOH HOH . H 6 HOH A 112 422 422 HOH HOH . H 6 HOH A 113 423 423 HOH HOH . H 6 HOH A 114 424 424 HOH HOH . H 6 HOH A 115 425 425 HOH HOH . H 6 HOH A 116 426 426 HOH HOH . H 6 HOH A 117 427 427 HOH HOH . H 6 HOH A 118 428 428 HOH HOH . H 6 HOH A 119 429 429 HOH HOH . H 6 HOH A 120 430 430 HOH HOH . H 6 HOH A 121 431 431 HOH HOH . H 6 HOH A 122 432 432 HOH HOH . H 6 HOH A 123 433 433 HOH HOH . H 6 HOH A 124 434 434 HOH HOH . H 6 HOH A 125 435 435 HOH HOH . H 6 HOH A 126 436 436 HOH HOH . H 6 HOH A 127 437 437 HOH HOH . H 6 HOH A 128 438 438 HOH HOH . H 6 HOH A 129 439 439 HOH HOH . H 6 HOH A 130 440 440 HOH HOH . H 6 HOH A 131 441 441 HOH HOH . H 6 HOH A 132 442 442 HOH HOH . H 6 HOH A 133 443 443 HOH HOH . H 6 HOH A 134 444 444 HOH HOH . H 6 HOH A 135 445 445 HOH HOH . H 6 HOH A 136 446 446 HOH HOH . H 6 HOH A 137 447 447 HOH HOH . H 6 HOH A 138 448 448 HOH HOH . H 6 HOH A 139 449 449 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 19.478 -1.071 29.421 0.6 16.87 ? C1 EDO 204 A 1 HETATM 2 O O1 EDO . . . E 4 19.857 -1.456 28.08 0.6 17.6 ? O1 EDO 204 A 1 HETATM 3 C C2 EDO . . . E 4 20.631 -0.414 30.189 0.6 16.29 ? C2 EDO 204 A 1 HETATM 4 O O2 EDO . . . E 4 21.64 -1.386 30.406 0.6 17.85 ? O2 EDO 204 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #