data_3KKN # _model_server_result.job_id bZ2ThQEjePYPvgKfWjYd2A _model_server_result.datetime_utc '2024-11-04 20:12:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kkn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":167}' # _entry.id 3KKN # _exptl.entry_id 3KKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KKN _cell.length_a 34.583 _cell.length_b 82 _cell.length_c 121.998 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 23 A SER 17 1_555 C MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc2 B O2G GNP . A GNP 167 1_555 C MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc3 B O2B GNP . A GNP 167 1_555 C MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc4 C MG MG . A MG 168 1_555 D O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc5 C MG MG . A MG 168 1_555 D O HOH . A HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc6 C MG MG . A MG 168 1_555 D O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 3KKN _atom_sites.fract_transf_matrix[1][1] 0.028916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 167 167 GNP GNP . C 3 MG A 1 168 168 MG MG . D 4 HOH A 1 1001 2001 HOH HOH . D 4 HOH A 2 1002 2002 HOH HOH . D 4 HOH A 3 1003 2003 HOH HOH . D 4 HOH A 4 1004 2004 HOH HOH . D 4 HOH A 5 1005 2005 HOH HOH . D 4 HOH A 6 1006 2006 HOH HOH . D 4 HOH A 7 1007 2007 HOH HOH . D 4 HOH A 8 1008 2008 HOH HOH . D 4 HOH A 9 1009 2009 HOH HOH . D 4 HOH A 10 1010 2010 HOH HOH . D 4 HOH A 11 1011 2011 HOH HOH . D 4 HOH A 12 1012 2012 HOH HOH . D 4 HOH A 13 1013 2013 HOH HOH . D 4 HOH A 14 1014 2014 HOH HOH . D 4 HOH A 15 1015 2015 HOH HOH . D 4 HOH A 16 1016 2016 HOH HOH . D 4 HOH A 17 1017 2017 HOH HOH . D 4 HOH A 18 1018 2018 HOH HOH . D 4 HOH A 19 1019 2019 HOH HOH . D 4 HOH A 20 1020 2020 HOH HOH . D 4 HOH A 21 1021 2021 HOH HOH . D 4 HOH A 22 1022 2022 HOH HOH . D 4 HOH A 23 1023 2023 HOH HOH . D 4 HOH A 24 1024 2024 HOH HOH . D 4 HOH A 25 1025 2025 HOH HOH . D 4 HOH A 26 1026 2026 HOH HOH . D 4 HOH A 27 1027 2027 HOH HOH . D 4 HOH A 28 1028 2028 HOH HOH . D 4 HOH A 29 1029 2029 HOH HOH . D 4 HOH A 30 1030 2030 HOH HOH . D 4 HOH A 31 1031 2031 HOH HOH . D 4 HOH A 32 1032 2032 HOH HOH . D 4 HOH A 33 1033 2033 HOH HOH . D 4 HOH A 34 1034 2034 HOH HOH . D 4 HOH A 35 1035 2035 HOH HOH . D 4 HOH A 36 1036 2036 HOH HOH . D 4 HOH A 37 1037 2037 HOH HOH . D 4 HOH A 38 1038 2038 HOH HOH . D 4 HOH A 39 1039 2039 HOH HOH . D 4 HOH A 40 1040 2040 HOH HOH . D 4 HOH A 41 1041 2041 HOH HOH . D 4 HOH A 42 1042 2042 HOH HOH . D 4 HOH A 43 1043 2043 HOH HOH . D 4 HOH A 44 1044 2044 HOH HOH . D 4 HOH A 45 1045 2045 HOH HOH . D 4 HOH A 46 1046 2046 HOH HOH . D 4 HOH A 47 1047 2047 HOH HOH . D 4 HOH A 48 1048 2048 HOH HOH . D 4 HOH A 49 1049 2049 HOH HOH . D 4 HOH A 50 1050 2050 HOH HOH . D 4 HOH A 51 1051 2051 HOH HOH . D 4 HOH A 52 1052 2052 HOH HOH . D 4 HOH A 53 1053 2053 HOH HOH . D 4 HOH A 54 1054 2054 HOH HOH . D 4 HOH A 55 1055 2055 HOH HOH . D 4 HOH A 56 1056 2056 HOH HOH . D 4 HOH A 57 1057 2057 HOH HOH . D 4 HOH A 58 1058 2058 HOH HOH . D 4 HOH A 59 1059 2059 HOH HOH . D 4 HOH A 60 1060 2060 HOH HOH . D 4 HOH A 61 1061 2061 HOH HOH . D 4 HOH A 62 1062 2062 HOH HOH . D 4 HOH A 63 1063 2063 HOH HOH . D 4 HOH A 64 1064 2064 HOH HOH . D 4 HOH A 65 1065 2065 HOH HOH . D 4 HOH A 66 1066 2066 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 12.808 9.891 38.83 1 16.36 ? PG GNP 167 A 1 HETATM 2 O O1G GNP . . . B 2 13.624 8.78 38.239 1 15.94 ? O1G GNP 167 A 1 HETATM 3 O O2G GNP . . . B 2 12.231 10.831 37.79 1 14.7 ? O2G GNP 167 A 1 HETATM 4 O O3G GNP . . . B 2 13.708 10.54 39.842 1 15 ? O3G GNP 167 A 1 HETATM 5 N N3B GNP . . . B 2 11.572 9.248 39.614 1 12.87 ? N3B GNP 167 A 1 HETATM 6 P PB GNP . . . B 2 10.31 10.021 40.214 1 12.32 ? PB GNP 167 A 1 HETATM 7 O O1B GNP . . . B 2 10.685 10.621 41.523 1 11.29 ? O1B GNP 167 A 1 HETATM 8 O O2B GNP . . . B 2 9.747 10.969 39.226 1 9.25 ? O2B GNP 167 A 1 HETATM 9 O O3A GNP . . . B 2 9.203 8.999 40.558 1 10.83 ? O3A GNP 167 A 1 HETATM 10 P PA GNP . . . B 2 8.141 8.372 39.622 1 12.57 ? PA GNP 167 A 1 HETATM 11 O O1A GNP . . . B 2 8.841 7.958 38.389 1 11.95 ? O1A GNP 167 A 1 HETATM 12 O O2A GNP . . . B 2 6.922 9.194 39.513 1 12.44 ? O2A GNP 167 A 1 HETATM 13 O O5' GNP . . . B 2 7.674 7.057 40.376 1 12.62 ? O5' GNP 167 A 1 HETATM 14 C C5' GNP . . . B 2 8.605 6.033 40.778 1 11.83 ? C5' GNP 167 A 1 HETATM 15 C C4' GNP . . . B 2 7.842 4.73 40.989 1 11.63 ? C4' GNP 167 A 1 HETATM 16 O O4' GNP . . . B 2 7.028 4.838 42.184 1 12.43 ? O4' GNP 167 A 1 HETATM 17 C C3' GNP . . . B 2 6.856 4.394 39.865 1 14.05 ? C3' GNP 167 A 1 HETATM 18 O O3' GNP . . . B 2 6.762 2.998 39.695 1 14.31 ? O3' GNP 167 A 1 HETATM 19 C C2' GNP . . . B 2 5.53 4.974 40.366 1 13.72 ? C2' GNP 167 A 1 HETATM 20 O O2' GNP . . . B 2 4.374 4.353 39.821 1 14.13 ? O2' GNP 167 A 1 HETATM 21 C C1' GNP . . . B 2 5.647 4.739 41.875 1 12.15 ? C1' GNP 167 A 1 HETATM 22 N N9 GNP . . . B 2 4.903 5.7 42.698 1 11.87 ? N9 GNP 167 A 1 HETATM 23 C C8 GNP . . . B 2 4.904 7.074 42.622 1 11.02 ? C8 GNP 167 A 1 HETATM 24 N N7 GNP . . . B 2 4.132 7.646 43.515 1 11.32 ? N7 GNP 167 A 1 HETATM 25 C C5 GNP . . . B 2 3.594 6.583 44.232 1 11.47 ? C5 GNP 167 A 1 HETATM 26 C C6 GNP . . . B 2 2.678 6.563 45.315 1 12.04 ? C6 GNP 167 A 1 HETATM 27 O O6 GNP . . . B 2 2.152 7.525 45.887 1 10.81 ? O6 GNP 167 A 1 HETATM 28 N N1 GNP . . . B 2 2.391 5.255 45.741 1 12.9 ? N1 GNP 167 A 1 HETATM 29 C C2 GNP . . . B 2 2.927 4.114 45.183 1 12.46 ? C2 GNP 167 A 1 HETATM 30 N N2 GNP . . . B 2 2.554 2.938 45.698 1 11.99 ? N2 GNP 167 A 1 HETATM 31 N N3 GNP . . . B 2 3.767 4.125 44.164 1 12.38 ? N3 GNP 167 A 1 HETATM 32 C C4 GNP . . . B 2 4.051 5.385 43.738 1 11.21 ? C4 GNP 167 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 32 #