data_3KKT # _model_server_result.job_id 6TwzrZzL8aBJeYcPd9M8aw _model_server_result.datetime_utc '2024-10-11 00:25:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kkt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":529}' # _entry.id 3KKT # _exptl.entry_id 3KKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.334 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KKT _cell.length_a 89.74 _cell.length_b 89.74 _cell.length_c 337.443 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 A,B,C,D,E,F,G,H,I,J,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 302 A CYS 432 1_555 A SG CYS 369 A CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 302 B CYS 432 1_555 B SG CYS 369 B CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C ZN ZN . A ZN 1 1_555 A NE2 HIS 108 A HIS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc2 C ZN ZN . A ZN 1 1_555 A NE2 HIS 144 A HIS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc3 C ZN ZN . A ZN 1 1_555 A OD2 ASP 145 A ASP 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc4 C ZN ZN . A ZN 1 1_555 A OD2 ASP 262 A ASP 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc5 C ZN ZN . A ZN 1 1_555 J O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc6 C ZN ZN . A ZN 1 1_555 J O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc7 E MG MG . A MG 529 1_555 J O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc8 F ZN ZN . B ZN 2 1_555 K O HOH . B HOH 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc9 F ZN ZN . B ZN 2 1_555 K O HOH . B HOH 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc10 F ZN ZN . B ZN 2 1_555 B NE2 HIS 108 B HIS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc11 F ZN ZN . B ZN 2 1_555 B OD2 ASP 145 B ASP 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc12 F ZN ZN . B ZN 2 1_555 B OD2 ASP 262 B ASP 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc13 K O HOH . B HOH 12 1_555 I MG MG . B MG 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc14 K O HOH . B HOH 13 1_555 I MG MG . B MG 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc15 B OD1 ASP 145 B ASP 275 1_555 I MG MG . B MG 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? # _chem_comp.formula 'C11 H26 N2 O6' _chem_comp.formula_weight 282.334 _chem_comp.id B3P _chem_comp.mon_nstd_flag . _chem_comp.name 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 B3P sing 120 n n C1 C3 B3P sing 121 n n C1 H11 B3P sing 122 n n C1 H12 B3P sing 123 n n C2 N2 B3P sing 124 n n C2 H21 B3P sing 125 n n C2 H22 B3P sing 126 n n C3 N1 B3P sing 127 n n C3 H31 B3P sing 128 n n C3 H32 B3P sing 129 n n N1 C4 B3P sing 130 n n N1 HN1 B3P sing 131 n n C4 C5 B3P sing 132 n n C4 C6 B3P sing 133 n n C4 C7 B3P sing 134 n n C5 O4 B3P sing 135 n n C5 H51 B3P sing 136 n n C5 H52 B3P sing 137 n n C6 O5 B3P sing 138 n n C6 H61 B3P sing 139 n n C6 H62 B3P sing 140 n n C7 O6 B3P sing 141 n n C7 H71 B3P sing 142 n n C7 H72 B3P sing 143 n n N2 C8 B3P sing 144 n n N2 HN2 B3P sing 145 n n C8 C9 B3P sing 146 n n C8 C10 B3P sing 147 n n C8 C11 B3P sing 148 n n C9 O1 B3P sing 149 n n C9 H91 B3P sing 150 n n C9 H92 B3P sing 151 n n C10 O2 B3P sing 152 n n C10 H101 B3P sing 153 n n C10 H102 B3P sing 154 n n C11 O3 B3P sing 155 n n C11 H111 B3P sing 156 n n C11 H112 B3P sing 157 n n O1 HO1 B3P sing 158 n n O2 HO2 B3P sing 159 n n O3 HO3 B3P sing 160 n n O4 HO4 B3P sing 161 n n O5 HO5 B3P sing 162 n n O6 HO6 B3P sing 163 n n # _atom_sites.entry_id 3KKT _atom_sites.fract_transf_matrix[1][1] 0.011143 _atom_sites.fract_transf_matrix[1][2] 0.006434 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1 1 ZN ZN . D 3 0CP A 1 2 2 0CP CP8 . E 4 MG A 1 529 1 MG MG . F 2 ZN B 1 2 2 ZN ZN . G 3 0CP B 1 1 1 0CP CP8 . H 5 B3P B 1 529 1 B3P BTP . I 4 MG B 1 530 2 MG MG . J 6 HOH A 1 3 3 HOH HOH . J 6 HOH A 2 5 5 HOH HOH . J 6 HOH A 3 6 6 HOH HOH . J 6 HOH A 4 7 7 HOH HOH . J 6 HOH A 5 8 8 HOH HOH . J 6 HOH A 6 20 20 HOH HOH . J 6 HOH A 7 21 21 HOH HOH . J 6 HOH A 8 22 22 HOH HOH . J 6 HOH A 9 32 32 HOH HOH . J 6 HOH A 10 33 33 HOH HOH . J 6 HOH A 11 35 35 HOH HOH . J 6 HOH A 12 36 36 HOH HOH . J 6 HOH A 13 37 37 HOH HOH . J 6 HOH A 14 44 44 HOH HOH . J 6 HOH A 15 46 46 HOH HOH . J 6 HOH A 16 48 48 HOH HOH . J 6 HOH A 17 49 49 HOH HOH . J 6 HOH A 18 50 50 HOH HOH . J 6 HOH A 19 54 54 HOH HOH . J 6 HOH A 20 58 58 HOH HOH . J 6 HOH A 21 59 59 HOH HOH . J 6 HOH A 22 60 60 HOH HOH . J 6 HOH A 23 530 1 HOH HOH . J 6 HOH A 24 531 2 HOH HOH . K 6 HOH B 1 4 4 HOH HOH . K 6 HOH B 2 9 9 HOH HOH . K 6 HOH B 3 10 10 HOH HOH . K 6 HOH B 4 11 11 HOH HOH . K 6 HOH B 5 12 12 HOH HOH . K 6 HOH B 6 13 13 HOH HOH . K 6 HOH B 7 14 14 HOH HOH . K 6 HOH B 8 15 15 HOH HOH . K 6 HOH B 9 16 16 HOH HOH . K 6 HOH B 10 17 17 HOH HOH . K 6 HOH B 11 18 18 HOH HOH . K 6 HOH B 12 19 19 HOH HOH . K 6 HOH B 13 23 23 HOH HOH . K 6 HOH B 14 24 24 HOH HOH . K 6 HOH B 15 25 25 HOH HOH . K 6 HOH B 16 27 27 HOH HOH . K 6 HOH B 17 28 28 HOH HOH . K 6 HOH B 18 29 29 HOH HOH . K 6 HOH B 19 30 30 HOH HOH . K 6 HOH B 20 31 31 HOH HOH . K 6 HOH B 21 34 34 HOH HOH . K 6 HOH B 22 38 38 HOH HOH . K 6 HOH B 23 39 39 HOH HOH . K 6 HOH B 24 40 40 HOH HOH . K 6 HOH B 25 41 41 HOH HOH . K 6 HOH B 26 42 42 HOH HOH . K 6 HOH B 27 43 43 HOH HOH . K 6 HOH B 28 45 45 HOH HOH . K 6 HOH B 29 47 47 HOH HOH . K 6 HOH B 30 51 51 HOH HOH . K 6 HOH B 31 52 52 HOH HOH . K 6 HOH B 32 53 53 HOH HOH . K 6 HOH B 33 55 55 HOH HOH . K 6 HOH B 34 56 56 HOH HOH . K 6 HOH B 35 57 57 HOH HOH . K 6 HOH B 36 61 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B3P . . . H 5 16.07 -42.354 -27.676 0.5 29.05 ? C1 B3P 529 B 1 HETATM 2 C C2 B3P . . . H 5 14.649 -41.819 -27.612 0.5 29.47 ? C2 B3P 529 B 1 HETATM 3 C C3 B3P . . . H 5 16.42 -42.745 -29.104 0.5 28.92 ? C3 B3P 529 B 1 HETATM 4 N N1 B3P . . . H 5 16.503 -44.182 -29.255 0.5 29.15 ? N1 B3P 529 B 1 HETATM 5 C C4 B3P . . . H 5 17.754 -44.772 -29.671 0.5 29.1 ? C4 B3P 529 B 1 HETATM 6 C C5 B3P . . . H 5 18.877 -43.872 -29.178 0.5 28.95 ? C5 B3P 529 B 1 HETATM 7 C C6 B3P . . . H 5 17.777 -44.881 -31.19 0.5 29.43 ? C6 B3P 529 B 1 HETATM 8 C C7 B3P . . . H 5 17.893 -46.16 -29.054 0.5 29.14 ? C7 B3P 529 B 1 HETATM 9 N N2 B3P . . . H 5 14.622 -40.402 -27.312 0.5 29.83 ? N2 B3P 529 B 1 HETATM 10 C C8 B3P . . . H 5 14.508 -39.959 -25.937 0.5 29.99 ? C8 B3P 529 B 1 HETATM 11 C C9 B3P . . . H 5 15.802 -39.245 -25.572 0.5 30.33 ? C9 B3P 529 B 1 HETATM 12 C C10 B3P . . . H 5 13.323 -39.006 -25.821 0.5 30.17 ? C10 B3P 529 B 1 HETATM 13 C C11 B3P . . . H 5 14.301 -41.177 -25.042 0.5 29.76 ? C11 B3P 529 B 1 HETATM 14 O O1 B3P . . . H 5 16.584 -39.096 -26.763 0.5 30.6 ? O1 B3P 529 B 1 HETATM 15 O O2 B3P . . . H 5 12.847 -38.654 -27.127 0.5 29.96 ? O2 B3P 529 B 1 HETATM 16 O O3 B3P . . . H 5 12.92 -41.562 -25.052 0.5 29.43 ? O3 B3P 529 B 1 HETATM 17 O O4 B3P . . . H 5 20.127 -44.549 -29.321 0.5 28.71 ? O4 B3P 529 B 1 HETATM 18 O O5 B3P . . . H 5 17.543 -46.241 -31.579 0.5 29.5 ? O5 B3P 529 B 1 HETATM 19 O O6 B3P . . . H 5 16.639 -46.852 -29.11 0.5 29.11 ? O6 B3P 529 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #