data_3KKY # _model_server_result.job_id Owzkx4kAwZBTyUWI_JuaoA _model_server_result.datetime_utc '2024-12-22 06:29:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":211}' # _entry.id 3KKY # _exptl.entry_id 3KKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KKY _cell.length_a 60.15 _cell.length_b 80.24 _cell.length_c 85.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 27 A HIS 26 1_555 C MN MN . A MN 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc2 A NE2 HIS 81 A HIS 80 1_555 C MN MN . A MN 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc3 A OD2 ASP 173 A ASP 172 1_555 C MN MN . A MN 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc4 A NE2 HIS 177 A HIS 176 1_555 C MN MN . A MN 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc5 C MN MN . A MN 211 1_555 E O HOH . A HOH 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc6 B NE2 HIS 27 B HIS 26 1_555 D MN MN . B MN 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc7 B NE2 HIS 81 B HIS 80 1_555 D MN MN . B MN 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc8 B OD2 ASP 173 B ASP 172 1_555 D MN MN . B MN 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc9 B NE2 HIS 177 B HIS 176 1_555 D MN MN . B MN 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc10 D MN MN . B MN 211 1_555 F O HOH . B HOH 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KKY _atom_sites.fract_transf_matrix[1][1] 0.016626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 211 211 MN MN . D 2 MN B 1 211 211 MN MN . E 3 HOH A 1 212 1 HOH HOH . E 3 HOH A 2 213 2 HOH HOH . E 3 HOH A 3 214 214 HOH HOH . E 3 HOH A 4 215 215 HOH HOH . E 3 HOH A 5 216 216 HOH HOH . E 3 HOH A 6 217 217 HOH HOH . E 3 HOH A 7 218 3 HOH HOH . E 3 HOH A 8 219 9 HOH HOH . E 3 HOH A 9 220 10 HOH HOH . E 3 HOH A 10 221 11 HOH HOH . E 3 HOH A 11 222 222 HOH HOH . E 3 HOH A 12 223 13 HOH HOH . E 3 HOH A 13 224 15 HOH HOH . E 3 HOH A 14 225 225 HOH HOH . E 3 HOH A 15 226 16 HOH HOH . E 3 HOH A 16 227 17 HOH HOH . E 3 HOH A 17 228 19 HOH HOH . E 3 HOH A 18 229 24 HOH HOH . E 3 HOH A 19 230 25 HOH HOH . E 3 HOH A 20 231 27 HOH HOH . E 3 HOH A 21 232 28 HOH HOH . E 3 HOH A 22 233 29 HOH HOH . E 3 HOH A 23 234 31 HOH HOH . E 3 HOH A 24 235 32 HOH HOH . E 3 HOH A 25 236 35 HOH HOH . E 3 HOH A 26 237 38 HOH HOH . E 3 HOH A 27 238 43 HOH HOH . E 3 HOH A 28 239 44 HOH HOH . E 3 HOH A 29 240 240 HOH HOH . E 3 HOH A 30 241 45 HOH HOH . E 3 HOH A 31 242 46 HOH HOH . E 3 HOH A 32 243 243 HOH HOH . E 3 HOH A 33 244 244 HOH HOH . E 3 HOH A 34 245 47 HOH HOH . E 3 HOH A 35 246 48 HOH HOH . E 3 HOH A 36 247 50 HOH HOH . E 3 HOH A 37 248 248 HOH HOH . E 3 HOH A 38 249 249 HOH HOH . E 3 HOH A 39 250 250 HOH HOH . E 3 HOH A 40 251 251 HOH HOH . E 3 HOH A 41 252 52 HOH HOH . E 3 HOH A 42 253 54 HOH HOH . E 3 HOH A 43 254 58 HOH HOH . E 3 HOH A 44 255 59 HOH HOH . E 3 HOH A 45 256 61 HOH HOH . E 3 HOH A 46 257 66 HOH HOH . E 3 HOH A 47 258 69 HOH HOH . E 3 HOH A 48 259 70 HOH HOH . E 3 HOH A 49 260 72 HOH HOH . E 3 HOH A 50 261 74 HOH HOH . E 3 HOH A 51 262 78 HOH HOH . E 3 HOH A 52 263 79 HOH HOH . E 3 HOH A 53 264 85 HOH HOH . E 3 HOH A 54 265 87 HOH HOH . E 3 HOH A 55 266 92 HOH HOH . E 3 HOH A 56 267 94 HOH HOH . E 3 HOH A 57 268 95 HOH HOH . E 3 HOH A 58 269 100 HOH HOH . E 3 HOH A 59 270 105 HOH HOH . E 3 HOH A 60 271 106 HOH HOH . E 3 HOH A 61 272 107 HOH HOH . E 3 HOH A 62 273 109 HOH HOH . E 3 HOH A 63 274 110 HOH HOH . E 3 HOH A 64 275 118 HOH HOH . E 3 HOH A 65 276 121 HOH HOH . E 3 HOH A 66 277 127 HOH HOH . E 3 HOH A 67 278 129 HOH HOH . E 3 HOH A 68 279 147 HOH HOH . E 3 HOH A 69 280 151 HOH HOH . E 3 HOH A 70 281 156 HOH HOH . E 3 HOH A 71 282 160 HOH HOH . E 3 HOH A 72 283 161 HOH HOH . E 3 HOH A 73 284 171 HOH HOH . E 3 HOH A 74 285 172 HOH HOH . E 3 HOH A 75 286 174 HOH HOH . E 3 HOH A 76 287 181 HOH HOH . E 3 HOH A 77 288 203 HOH HOH . E 3 HOH A 78 289 206 HOH HOH . E 3 HOH A 79 290 207 HOH HOH . E 3 HOH A 80 291 208 HOH HOH . E 3 HOH A 81 292 209 HOH HOH . E 3 HOH A 82 293 210 HOH HOH . F 3 HOH B 1 212 212 HOH HOH . F 3 HOH B 2 213 213 HOH HOH . F 3 HOH B 3 214 4 HOH HOH . F 3 HOH B 4 215 5 HOH HOH . F 3 HOH B 5 216 6 HOH HOH . F 3 HOH B 6 217 7 HOH HOH . F 3 HOH B 7 218 8 HOH HOH . F 3 HOH B 8 219 14 HOH HOH . F 3 HOH B 9 220 220 HOH HOH . F 3 HOH B 10 221 18 HOH HOH . F 3 HOH B 11 222 20 HOH HOH . F 3 HOH B 12 223 223 HOH HOH . F 3 HOH B 13 224 224 HOH HOH . F 3 HOH B 14 225 21 HOH HOH . F 3 HOH B 15 226 226 HOH HOH . F 3 HOH B 16 227 22 HOH HOH . F 3 HOH B 17 228 23 HOH HOH . F 3 HOH B 18 229 26 HOH HOH . F 3 HOH B 19 230 230 HOH HOH . F 3 HOH B 20 231 30 HOH HOH . F 3 HOH B 21 232 232 HOH HOH . F 3 HOH B 22 233 33 HOH HOH . F 3 HOH B 23 234 34 HOH HOH . F 3 HOH B 24 235 36 HOH HOH . F 3 HOH B 25 236 37 HOH HOH . F 3 HOH B 26 237 237 HOH HOH . F 3 HOH B 27 238 39 HOH HOH . F 3 HOH B 28 239 40 HOH HOH . F 3 HOH B 29 240 41 HOH HOH . F 3 HOH B 30 241 51 HOH HOH . F 3 HOH B 31 242 53 HOH HOH . F 3 HOH B 32 243 55 HOH HOH . F 3 HOH B 33 244 56 HOH HOH . F 3 HOH B 34 245 57 HOH HOH . F 3 HOH B 35 246 246 HOH HOH . F 3 HOH B 36 247 247 HOH HOH . F 3 HOH B 37 248 60 HOH HOH . F 3 HOH B 38 249 62 HOH HOH . F 3 HOH B 39 250 63 HOH HOH . F 3 HOH B 40 251 64 HOH HOH . F 3 HOH B 41 252 65 HOH HOH . F 3 HOH B 42 253 68 HOH HOH . F 3 HOH B 43 254 73 HOH HOH . F 3 HOH B 44 255 75 HOH HOH . F 3 HOH B 45 256 80 HOH HOH . F 3 HOH B 46 257 81 HOH HOH . F 3 HOH B 47 258 82 HOH HOH . F 3 HOH B 48 259 83 HOH HOH . F 3 HOH B 49 260 84 HOH HOH . F 3 HOH B 50 261 88 HOH HOH . F 3 HOH B 51 262 89 HOH HOH . F 3 HOH B 52 263 90 HOH HOH . F 3 HOH B 53 264 91 HOH HOH . F 3 HOH B 54 265 93 HOH HOH . F 3 HOH B 55 266 96 HOH HOH . F 3 HOH B 56 267 97 HOH HOH . F 3 HOH B 57 268 98 HOH HOH . F 3 HOH B 58 269 99 HOH HOH . F 3 HOH B 59 270 101 HOH HOH . F 3 HOH B 60 271 102 HOH HOH . F 3 HOH B 61 272 103 HOH HOH . F 3 HOH B 62 273 108 HOH HOH . F 3 HOH B 63 274 111 HOH HOH . F 3 HOH B 64 275 112 HOH HOH . F 3 HOH B 65 276 113 HOH HOH . F 3 HOH B 66 277 115 HOH HOH . F 3 HOH B 67 278 116 HOH HOH . F 3 HOH B 68 279 117 HOH HOH . F 3 HOH B 69 280 119 HOH HOH . F 3 HOH B 70 281 124 HOH HOH . F 3 HOH B 71 282 133 HOH HOH . F 3 HOH B 72 283 146 HOH HOH . F 3 HOH B 73 284 152 HOH HOH . F 3 HOH B 74 285 162 HOH HOH . F 3 HOH B 75 286 169 HOH HOH . F 3 HOH B 76 287 178 HOH HOH . F 3 HOH B 77 288 185 HOH HOH . F 3 HOH B 78 289 198 HOH HOH . F 3 HOH B 79 290 205 HOH HOH . F 3 HOH B 80 291 211 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -1.117 _atom_site.Cartn_y 1.168 _atom_site.Cartn_z -20.283 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 211 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #