data_3KL6 # _model_server_result.job_id hOSagMUKId0EcEcQyaq4og _model_server_result.datetime_utc '2024-12-21 16:15:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kl6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2}' # _entry.id 3KL6 # _exptl.entry_id 3KL6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KL6 _cell.length_a 49.002 _cell.length_b 70.345 _cell.length_c 78.546 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KL6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 50 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 B SG CYS 7 B CYS 1 1_555 B SG CYS 18 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 B SG CYS 14 B CYS 8 1_555 B SG CYS 27 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 B SG CYS 29 B CYS 23 1_555 B SG CYS 42 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc1 H CA CA . A CA 2 1_555 A O TYR 173 A TYR 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc2 H CA CA . A CA 2 1_555 A O ASP 174 A ASP 185 1_555 ? ? ? A ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc3 H CA CA . A CA 2 1_555 A O ARG 211 A ARG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 H CA CA . A CA 2 1_555 A O LYS 214 A LYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc5 H CA CA . A CA 2 1_555 K O HOH . A HOH 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc6 I CA CA . A CA 3 1_555 A OD2 ASP 56 A ASP 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc7 I CA CA . A CA 3 1_555 A O ASN 58 A ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc8 I CA CA . A CA 3 1_555 A O GLN 61 A GLN 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc9 I CA CA . A CA 3 1_555 A OE2 GLU 63 A GLU 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc10 I CA CA . A CA 3 1_555 A OE2 GLU 66 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc11 I CA CA . A CA 3 1_555 A OE1 GLU 66 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? metalc ? metalc12 A OE2 GLU 111 A GLU 124 1_555 G CA CA . A CA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc13 A OE1 GLU 111 A GLU 124 1_555 G CA CA . A CA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc14 A OD2 ASP 113 A ASP 126 1_555 G CA CA . A CA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc15 A OD1 ASP 113 A ASP 126 1_555 G CA CA . A CA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc16 G CA CA . A CA 252 1_555 B NE2 HIS 19 B HIS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KL6 _atom_sites.fract_transf_matrix[1][1] 0.020407 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 443 A 1 1 1 443 443 . D 4 EDO A 1 902 902 EDO EDO . E 4 EDO A 1 904 904 EDO EDO . F 4 EDO A 1 905 905 EDO EDO . G 5 CA A 1 252 1 CA CA . H 5 CA A 1 2 2 CA CA . I 5 CA A 1 3 3 CA CA . J 4 EDO B 1 903 903 EDO EDO . K 6 HOH A 1 4 4 HOH HOH . K 6 HOH A 2 5 5 HOH HOH . K 6 HOH A 3 6 6 HOH HOH . K 6 HOH A 4 7 7 HOH HOH . K 6 HOH A 5 8 8 HOH HOH . K 6 HOH A 6 9 9 HOH HOH . K 6 HOH A 7 13 13 HOH HOH . K 6 HOH A 8 14 14 HOH HOH . K 6 HOH A 9 15 15 HOH HOH . K 6 HOH A 10 146 146 HOH HOH . K 6 HOH A 11 218 218 HOH HOH . K 6 HOH A 12 253 16 HOH HOH . K 6 HOH A 13 254 18 HOH HOH . K 6 HOH A 14 255 19 HOH HOH . K 6 HOH A 15 256 21 HOH HOH . K 6 HOH A 16 257 22 HOH HOH . K 6 HOH A 17 258 23 HOH HOH . K 6 HOH A 18 259 24 HOH HOH . K 6 HOH A 19 260 26 HOH HOH . K 6 HOH A 20 261 27 HOH HOH . K 6 HOH A 21 262 29 HOH HOH . K 6 HOH A 22 263 31 HOH HOH . K 6 HOH A 23 264 32 HOH HOH . K 6 HOH A 24 265 33 HOH HOH . K 6 HOH A 25 266 34 HOH HOH . K 6 HOH A 26 267 35 HOH HOH . K 6 HOH A 27 268 37 HOH HOH . K 6 HOH A 28 269 38 HOH HOH . K 6 HOH A 29 270 39 HOH HOH . K 6 HOH A 30 271 41 HOH HOH . K 6 HOH A 31 272 42 HOH HOH . K 6 HOH A 32 273 43 HOH HOH . K 6 HOH A 33 274 45 HOH HOH . K 6 HOH A 34 275 46 HOH HOH . K 6 HOH A 35 276 47 HOH HOH . K 6 HOH A 36 277 49 HOH HOH . K 6 HOH A 37 278 50 HOH HOH . K 6 HOH A 38 279 52 HOH HOH . K 6 HOH A 39 280 54 HOH HOH . K 6 HOH A 40 281 55 HOH HOH . K 6 HOH A 41 282 56 HOH HOH . K 6 HOH A 42 283 57 HOH HOH . K 6 HOH A 43 284 58 HOH HOH . K 6 HOH A 44 285 60 HOH HOH . K 6 HOH A 45 286 61 HOH HOH . K 6 HOH A 46 287 62 HOH HOH . K 6 HOH A 47 288 63 HOH HOH . K 6 HOH A 48 289 65 HOH HOH . K 6 HOH A 49 290 66 HOH HOH . K 6 HOH A 50 291 68 HOH HOH . K 6 HOH A 51 292 70 HOH HOH . K 6 HOH A 52 293 75 HOH HOH . K 6 HOH A 53 294 76 HOH HOH . K 6 HOH A 54 295 79 HOH HOH . K 6 HOH A 55 296 81 HOH HOH . K 6 HOH A 56 297 85 HOH HOH . K 6 HOH A 57 298 86 HOH HOH . K 6 HOH A 58 299 87 HOH HOH . K 6 HOH A 59 300 88 HOH HOH . K 6 HOH A 60 301 89 HOH HOH . K 6 HOH A 61 302 90 HOH HOH . K 6 HOH A 62 303 91 HOH HOH . K 6 HOH A 63 304 92 HOH HOH . K 6 HOH A 64 305 93 HOH HOH . K 6 HOH A 65 306 94 HOH HOH . K 6 HOH A 66 307 95 HOH HOH . K 6 HOH A 67 308 97 HOH HOH . K 6 HOH A 68 309 100 HOH HOH . K 6 HOH A 69 310 101 HOH HOH . K 6 HOH A 70 311 102 HOH HOH . K 6 HOH A 71 312 104 HOH HOH . K 6 HOH A 72 313 107 HOH HOH . K 6 HOH A 73 315 109 HOH HOH . K 6 HOH A 74 316 110 HOH HOH . K 6 HOH A 75 317 111 HOH HOH . K 6 HOH A 76 318 112 HOH HOH . K 6 HOH A 77 319 113 HOH HOH . K 6 HOH A 78 320 114 HOH HOH . K 6 HOH A 79 321 117 HOH HOH . K 6 HOH A 80 322 119 HOH HOH . K 6 HOH A 81 323 120 HOH HOH . K 6 HOH A 82 324 121 HOH HOH . K 6 HOH A 83 325 122 HOH HOH . K 6 HOH A 84 326 123 HOH HOH . K 6 HOH A 85 327 124 HOH HOH . K 6 HOH A 86 328 126 HOH HOH . K 6 HOH A 87 329 127 HOH HOH . K 6 HOH A 88 330 128 HOH HOH . K 6 HOH A 89 331 129 HOH HOH . K 6 HOH A 90 332 131 HOH HOH . K 6 HOH A 91 333 133 HOH HOH . K 6 HOH A 92 334 134 HOH HOH . K 6 HOH A 93 335 137 HOH HOH . K 6 HOH A 94 336 138 HOH HOH . K 6 HOH A 95 337 139 HOH HOH . K 6 HOH A 96 338 140 HOH HOH . K 6 HOH A 97 339 142 HOH HOH . K 6 HOH A 98 340 143 HOH HOH . K 6 HOH A 99 341 144 HOH HOH . K 6 HOH A 100 342 147 HOH HOH . K 6 HOH A 101 343 150 HOH HOH . K 6 HOH A 102 344 152 HOH HOH . K 6 HOH A 103 345 153 HOH HOH . K 6 HOH A 104 347 155 HOH HOH . K 6 HOH A 105 348 156 HOH HOH . K 6 HOH A 106 349 157 HOH HOH . K 6 HOH A 107 350 159 HOH HOH . K 6 HOH A 108 351 160 HOH HOH . K 6 HOH A 109 352 162 HOH HOH . K 6 HOH A 110 353 164 HOH HOH . K 6 HOH A 111 354 165 HOH HOH . K 6 HOH A 112 355 167 HOH HOH . K 6 HOH A 113 356 168 HOH HOH . K 6 HOH A 114 357 169 HOH HOH . K 6 HOH A 115 358 170 HOH HOH . K 6 HOH A 116 359 171 HOH HOH . K 6 HOH A 117 360 172 HOH HOH . K 6 HOH A 118 361 173 HOH HOH . K 6 HOH A 119 362 174 HOH HOH . K 6 HOH A 120 363 175 HOH HOH . K 6 HOH A 121 364 176 HOH HOH . K 6 HOH A 122 365 178 HOH HOH . K 6 HOH A 123 366 179 HOH HOH . K 6 HOH A 124 367 181 HOH HOH . K 6 HOH A 125 368 183 HOH HOH . K 6 HOH A 126 369 185 HOH HOH . K 6 HOH A 127 370 186 HOH HOH . K 6 HOH A 128 371 187 HOH HOH . K 6 HOH A 129 372 188 HOH HOH . K 6 HOH A 130 373 189 HOH HOH . K 6 HOH A 131 374 190 HOH HOH . K 6 HOH A 132 375 191 HOH HOH . K 6 HOH A 133 376 193 HOH HOH . K 6 HOH A 134 377 194 HOH HOH . K 6 HOH A 135 378 195 HOH HOH . K 6 HOH A 136 379 196 HOH HOH . K 6 HOH A 137 380 197 HOH HOH . K 6 HOH A 138 381 199 HOH HOH . K 6 HOH A 139 382 200 HOH HOH . K 6 HOH A 140 383 201 HOH HOH . K 6 HOH A 141 384 202 HOH HOH . K 6 HOH A 142 385 203 HOH HOH . K 6 HOH A 143 386 204 HOH HOH . K 6 HOH A 144 387 205 HOH HOH . K 6 HOH A 145 388 206 HOH HOH . K 6 HOH A 146 389 208 HOH HOH . K 6 HOH A 147 390 209 HOH HOH . K 6 HOH A 148 391 211 HOH HOH . K 6 HOH A 149 392 212 HOH HOH . K 6 HOH A 150 393 215 HOH HOH . K 6 HOH A 151 394 216 HOH HOH . K 6 HOH A 152 395 219 HOH HOH . K 6 HOH A 153 396 220 HOH HOH . K 6 HOH A 154 397 221 HOH HOH . L 6 HOH B 1 52 11 HOH HOH . L 6 HOH B 2 53 12 HOH HOH . L 6 HOH B 3 54 20 HOH HOH . L 6 HOH B 4 55 25 HOH HOH . L 6 HOH B 5 56 30 HOH HOH . L 6 HOH B 6 57 36 HOH HOH . L 6 HOH B 7 58 40 HOH HOH . L 6 HOH B 8 59 59 HOH HOH . L 6 HOH B 9 60 48 HOH HOH . L 6 HOH B 10 61 51 HOH HOH . L 6 HOH B 11 64 64 HOH HOH . L 6 HOH B 12 67 67 HOH HOH . L 6 HOH B 13 71 71 HOH HOH . L 6 HOH B 14 72 72 HOH HOH . L 6 HOH B 15 73 73 HOH HOH . L 6 HOH B 16 74 74 HOH HOH . L 6 HOH B 17 80 80 HOH HOH . L 6 HOH B 18 82 82 HOH HOH . L 6 HOH B 19 83 83 HOH HOH . L 6 HOH B 20 96 96 HOH HOH . L 6 HOH B 21 98 98 HOH HOH . L 6 HOH B 22 105 105 HOH HOH . L 6 HOH B 23 116 116 HOH HOH . L 6 HOH B 24 118 118 HOH HOH . L 6 HOH B 25 125 125 HOH HOH . L 6 HOH B 26 130 130 HOH HOH . L 6 HOH B 27 135 135 HOH HOH . L 6 HOH B 28 136 136 HOH HOH . L 6 HOH B 29 141 141 HOH HOH . L 6 HOH B 30 145 145 HOH HOH . L 6 HOH B 31 148 148 HOH HOH . L 6 HOH B 32 149 149 HOH HOH . L 6 HOH B 33 151 151 HOH HOH . L 6 HOH B 34 158 158 HOH HOH . L 6 HOH B 35 161 161 HOH HOH . L 6 HOH B 36 163 163 HOH HOH . L 6 HOH B 37 166 166 HOH HOH . L 6 HOH B 38 177 177 HOH HOH . L 6 HOH B 39 180 180 HOH HOH . L 6 HOH B 40 182 182 HOH HOH . L 6 HOH B 41 184 184 HOH HOH . L 6 HOH B 42 192 192 HOH HOH . L 6 HOH B 43 198 198 HOH HOH . L 6 HOH B 44 210 210 HOH HOH . L 6 HOH B 45 213 213 HOH HOH . L 6 HOH B 46 214 214 HOH HOH . L 6 HOH B 47 217 217 HOH HOH . L 6 HOH B 48 295 77 HOH HOH . L 6 HOH B 49 314 108 HOH HOH . L 6 HOH B 50 346 154 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x -0.302 _atom_site.Cartn_y 3.114 _atom_site.Cartn_z -17.933 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 2 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #