data_3KLM
#
_model_server_result.job_id            OAFaa-0DUXqvXciTwTpRCA 
_model_server_result.datetime_utc      '2024-10-18 17:26:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3klm 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":328}' 
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_entry.id    3KLM 
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_exptl.entry_id    3KLM 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          100.18 
_cell.angle_gamma         90 
_cell.entry_id            3KLM 
_cell.length_a            123.246 
_cell.length_b            43.36 
_cell.length_c            60.398 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3KLM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 183 n n 
C1 C2 GOL sing 184 n n 
C1 H11 GOL sing 185 n n 
C1 H12 GOL sing 186 n n 
O1 HO1 GOL sing 187 n n 
C2 O2 GOL sing 188 n n 
C2 C3 GOL sing 189 n n 
C2 H2 GOL sing 190 n n 
O2 HO2 GOL sing 191 n n 
C3 O3 GOL sing 192 n n 
C3 H31 GOL sing 193 n n 
C3 H32 GOL sing 194 n n 
O3 HO3 GOL sing 195 n n 
#
_atom_sites.entry_id                     3KLM 
_atom_sites.fract_transf_matrix[1][1]    0.008114 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001458 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023063 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016822 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DHT X 1 732 732 DHT DHT . 
C 3 GOL X 1 328 1 GOL GOL . 
D 4 HOH X 1 329 1 HOH HOH . 
D 4 HOH X 2 330 2 HOH HOH . 
D 4 HOH X 3 331 3 HOH HOH . 
D 4 HOH X 4 332 7 HOH HOH . 
D 4 HOH X 5 333 8 HOH HOH . 
D 4 HOH X 6 334 9 HOH HOH . 
D 4 HOH X 7 335 10 HOH HOH . 
D 4 HOH X 8 336 11 HOH HOH . 
D 4 HOH X 9 337 12 HOH HOH . 
D 4 HOH X 10 338 13 HOH HOH . 
D 4 HOH X 11 339 14 HOH HOH . 
D 4 HOH X 12 340 16 HOH HOH . 
D 4 HOH X 13 341 18 HOH HOH . 
D 4 HOH X 14 342 19 HOH HOH . 
D 4 HOH X 15 343 21 HOH HOH . 
D 4 HOH X 16 344 22 HOH HOH . 
D 4 HOH X 17 345 23 HOH HOH . 
D 4 HOH X 18 346 24 HOH HOH . 
D 4 HOH X 19 347 25 HOH HOH . 
D 4 HOH X 20 348 27 HOH HOH . 
D 4 HOH X 21 349 30 HOH HOH . 
D 4 HOH X 22 350 32 HOH HOH . 
D 4 HOH X 23 351 33 HOH HOH . 
D 4 HOH X 24 352 34 HOH HOH . 
D 4 HOH X 25 353 36 HOH HOH . 
D 4 HOH X 26 354 38 HOH HOH . 
D 4 HOH X 27 355 40 HOH HOH . 
D 4 HOH X 28 356 41 HOH HOH . 
D 4 HOH X 29 357 42 HOH HOH . 
D 4 HOH X 30 358 43 HOH HOH . 
D 4 HOH X 31 359 45 HOH HOH . 
D 4 HOH X 32 360 46 HOH HOH . 
D 4 HOH X 33 361 47 HOH HOH . 
D 4 HOH X 34 362 49 HOH HOH . 
D 4 HOH X 35 363 50 HOH HOH . 
D 4 HOH X 36 364 52 HOH HOH . 
D 4 HOH X 37 365 53 HOH HOH . 
D 4 HOH X 38 366 54 HOH HOH . 
D 4 HOH X 39 367 55 HOH HOH . 
D 4 HOH X 40 368 56 HOH HOH . 
D 4 HOH X 41 369 57 HOH HOH . 
D 4 HOH X 42 370 58 HOH HOH . 
D 4 HOH X 43 371 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 17.006 -3.942 19.923 1 49.49 ? C1 GOL 328 X 1 
HETATM 2 O O1 GOL . . . C 3 16.868 -2.555 20.259 1 44.58 ? O1 GOL 328 X 1 
HETATM 3 C C2 GOL . . . C 3 16.141 -4.473 18.752 1 51.46 ? C2 GOL 328 X 1 
HETATM 4 O O2 GOL . . . C 3 15.29 -3.471 18.236 1 45.94 ? O2 GOL 328 X 1 
HETATM 5 C C3 GOL . . . C 3 15.383 -5.774 19.095 1 49.8 ? C3 GOL 328 X 1 
HETATM 6 O O3 GOL . . . C 3 16.318 -6.828 19.067 1 56.05 ? O3 GOL 328 X 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           6 
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