data_3KM3 # _model_server_result.job_id '_B37NASRd34aTvGE9ytgxA' _model_server_result.datetime_utc '2024-11-18 05:36:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3km3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":190}' # _entry.id 3KM3 # _exptl.entry_id 3KM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KM3 _cell.length_a 84.66 _cell.length_b 84.66 _cell.length_c 140.74 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 84.66 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 42.33 73.317711 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KM3 _atom_sites.fract_transf_matrix[1][1] 0.011812 _atom_sites.fract_transf_matrix[1][2] 0.00682 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD A 1 186 1 IOD IOD . D 2 IOD A 1 187 2 IOD IOD . E 2 IOD A 1 188 3 IOD IOD . F 2 IOD A 1 189 4 IOD IOD . G 2 IOD A 1 190 5 IOD IOD . H 2 IOD A 1 191 6 IOD IOD . I 2 IOD A 1 192 13 IOD IOD . J 2 IOD A 1 193 16 IOD IOD . K 2 IOD B 1 186 7 IOD IOD . L 2 IOD B 1 187 8 IOD IOD . M 2 IOD B 1 188 9 IOD IOD . N 2 IOD B 1 189 10 IOD IOD . O 2 IOD B 1 190 11 IOD IOD . P 2 IOD B 1 191 12 IOD IOD . Q 2 IOD B 1 192 14 IOD IOD . R 2 IOD B 1 193 15 IOD IOD . S 3 HOH A 1 194 1 HOH HOH . S 3 HOH A 2 195 2 HOH HOH . S 3 HOH A 3 196 4 HOH HOH . S 3 HOH A 4 197 5 HOH HOH . S 3 HOH A 5 198 8 HOH HOH . S 3 HOH A 6 199 9 HOH HOH . S 3 HOH A 7 200 10 HOH HOH . S 3 HOH A 8 201 11 HOH HOH . S 3 HOH A 9 202 12 HOH HOH . S 3 HOH A 10 203 14 HOH HOH . S 3 HOH A 11 204 16 HOH HOH . S 3 HOH A 12 205 17 HOH HOH . S 3 HOH A 13 206 18 HOH HOH . S 3 HOH A 14 207 20 HOH HOH . S 3 HOH A 15 208 21 HOH HOH . S 3 HOH A 16 209 22 HOH HOH . S 3 HOH A 17 210 24 HOH HOH . S 3 HOH A 18 211 25 HOH HOH . S 3 HOH A 19 212 28 HOH HOH . S 3 HOH A 20 213 32 HOH HOH . S 3 HOH A 21 214 33 HOH HOH . S 3 HOH A 22 215 35 HOH HOH . S 3 HOH A 23 216 39 HOH HOH . S 3 HOH A 24 217 41 HOH HOH . S 3 HOH A 25 218 42 HOH HOH . S 3 HOH A 26 219 43 HOH HOH . S 3 HOH A 27 220 45 HOH HOH . S 3 HOH A 28 221 46 HOH HOH . S 3 HOH A 29 222 48 HOH HOH . S 3 HOH A 30 223 49 HOH HOH . S 3 HOH A 31 224 52 HOH HOH . S 3 HOH A 32 225 53 HOH HOH . S 3 HOH A 33 226 54 HOH HOH . S 3 HOH A 34 227 58 HOH HOH . S 3 HOH A 35 228 59 HOH HOH . S 3 HOH A 36 229 60 HOH HOH . S 3 HOH A 37 230 63 HOH HOH . S 3 HOH A 38 231 64 HOH HOH . S 3 HOH A 39 232 66 HOH HOH . S 3 HOH A 40 233 67 HOH HOH . S 3 HOH A 41 234 68 HOH HOH . S 3 HOH A 42 235 72 HOH HOH . S 3 HOH A 43 236 73 HOH HOH . S 3 HOH A 44 237 74 HOH HOH . S 3 HOH A 45 238 75 HOH HOH . S 3 HOH A 46 239 76 HOH HOH . S 3 HOH A 47 240 78 HOH HOH . S 3 HOH A 48 241 79 HOH HOH . S 3 HOH A 49 242 83 HOH HOH . S 3 HOH A 50 243 84 HOH HOH . S 3 HOH A 51 244 85 HOH HOH . S 3 HOH A 52 245 86 HOH HOH . S 3 HOH A 53 246 87 HOH HOH . S 3 HOH A 54 247 88 HOH HOH . S 3 HOH A 55 248 90 HOH HOH . S 3 HOH A 56 249 93 HOH HOH . S 3 HOH A 57 250 94 HOH HOH . S 3 HOH A 58 251 96 HOH HOH . S 3 HOH A 59 252 97 HOH HOH . S 3 HOH A 60 253 98 HOH HOH . S 3 HOH A 61 254 99 HOH HOH . S 3 HOH A 62 255 100 HOH HOH . S 3 HOH A 63 256 102 HOH HOH . S 3 HOH A 64 257 104 HOH HOH . S 3 HOH A 65 258 105 HOH HOH . S 3 HOH A 66 259 106 HOH HOH . S 3 HOH A 67 260 108 HOH HOH . S 3 HOH A 68 261 110 HOH HOH . S 3 HOH A 69 262 112 HOH HOH . S 3 HOH A 70 263 113 HOH HOH . S 3 HOH A 71 264 117 HOH HOH . S 3 HOH A 72 265 118 HOH HOH . S 3 HOH A 73 266 119 HOH HOH . S 3 HOH A 74 267 120 HOH HOH . S 3 HOH A 75 268 121 HOH HOH . S 3 HOH A 76 269 125 HOH HOH . S 3 HOH A 77 270 126 HOH HOH . S 3 HOH A 78 271 127 HOH HOH . S 3 HOH A 79 272 128 HOH HOH . S 3 HOH A 80 273 129 HOH HOH . S 3 HOH A 81 274 130 HOH HOH . S 3 HOH A 82 275 131 HOH HOH . S 3 HOH A 83 276 132 HOH HOH . S 3 HOH A 84 277 133 HOH HOH . S 3 HOH A 85 278 134 HOH HOH . S 3 HOH A 86 279 135 HOH HOH . S 3 HOH A 87 280 136 HOH HOH . S 3 HOH A 88 281 137 HOH HOH . S 3 HOH A 89 282 138 HOH HOH . S 3 HOH A 90 283 139 HOH HOH . S 3 HOH A 91 284 150 HOH HOH . S 3 HOH A 92 285 151 HOH HOH . S 3 HOH A 93 286 152 HOH HOH . S 3 HOH A 94 287 153 HOH HOH . S 3 HOH A 95 288 154 HOH HOH . S 3 HOH A 96 289 158 HOH HOH . S 3 HOH A 97 290 159 HOH HOH . S 3 HOH A 98 291 160 HOH HOH . S 3 HOH A 99 292 161 HOH HOH . S 3 HOH A 100 293 162 HOH HOH . S 3 HOH A 101 294 163 HOH HOH . S 3 HOH A 102 295 164 HOH HOH . S 3 HOH A 103 296 165 HOH HOH . S 3 HOH A 104 297 167 HOH HOH . S 3 HOH A 105 298 168 HOH HOH . S 3 HOH A 106 299 169 HOH HOH . S 3 HOH A 107 300 170 HOH HOH . S 3 HOH A 108 301 171 HOH HOH . S 3 HOH A 109 302 172 HOH HOH . S 3 HOH A 110 303 173 HOH HOH . S 3 HOH A 111 304 174 HOH HOH . S 3 HOH A 112 305 175 HOH HOH . T 3 HOH B 1 194 3 HOH HOH . T 3 HOH B 2 195 6 HOH HOH . T 3 HOH B 3 196 7 HOH HOH . T 3 HOH B 4 197 13 HOH HOH . T 3 HOH B 5 198 15 HOH HOH . T 3 HOH B 6 199 19 HOH HOH . T 3 HOH B 7 200 23 HOH HOH . T 3 HOH B 8 201 26 HOH HOH . T 3 HOH B 9 202 27 HOH HOH . T 3 HOH B 10 203 29 HOH HOH . T 3 HOH B 11 204 30 HOH HOH . T 3 HOH B 12 205 31 HOH HOH . T 3 HOH B 13 206 34 HOH HOH . T 3 HOH B 14 207 36 HOH HOH . T 3 HOH B 15 208 37 HOH HOH . T 3 HOH B 16 209 38 HOH HOH . T 3 HOH B 17 210 40 HOH HOH . T 3 HOH B 18 211 44 HOH HOH . T 3 HOH B 19 212 47 HOH HOH . T 3 HOH B 20 213 50 HOH HOH . T 3 HOH B 21 214 51 HOH HOH . T 3 HOH B 22 215 55 HOH HOH . T 3 HOH B 23 216 56 HOH HOH . T 3 HOH B 24 217 57 HOH HOH . T 3 HOH B 25 218 61 HOH HOH . T 3 HOH B 26 219 62 HOH HOH . T 3 HOH B 27 220 65 HOH HOH . T 3 HOH B 28 221 69 HOH HOH . T 3 HOH B 29 222 70 HOH HOH . T 3 HOH B 30 223 71 HOH HOH . T 3 HOH B 31 224 77 HOH HOH . T 3 HOH B 32 225 80 HOH HOH . T 3 HOH B 33 226 81 HOH HOH . T 3 HOH B 34 227 82 HOH HOH . T 3 HOH B 35 228 89 HOH HOH . T 3 HOH B 36 229 91 HOH HOH . T 3 HOH B 37 230 92 HOH HOH . T 3 HOH B 38 231 95 HOH HOH . T 3 HOH B 39 232 101 HOH HOH . T 3 HOH B 40 233 103 HOH HOH . T 3 HOH B 41 234 107 HOH HOH . T 3 HOH B 42 235 109 HOH HOH . T 3 HOH B 43 236 111 HOH HOH . T 3 HOH B 44 237 114 HOH HOH . T 3 HOH B 45 238 115 HOH HOH . T 3 HOH B 46 239 116 HOH HOH . T 3 HOH B 47 240 122 HOH HOH . T 3 HOH B 48 241 123 HOH HOH . T 3 HOH B 49 242 124 HOH HOH . T 3 HOH B 50 243 140 HOH HOH . T 3 HOH B 51 244 141 HOH HOH . T 3 HOH B 52 245 142 HOH HOH . T 3 HOH B 53 246 143 HOH HOH . T 3 HOH B 54 247 144 HOH HOH . T 3 HOH B 55 248 145 HOH HOH . T 3 HOH B 56 249 146 HOH HOH . T 3 HOH B 57 250 147 HOH HOH . T 3 HOH B 58 251 148 HOH HOH . T 3 HOH B 59 252 149 HOH HOH . T 3 HOH B 60 253 155 HOH HOH . T 3 HOH B 61 254 156 HOH HOH . T 3 HOH B 62 255 157 HOH HOH . T 3 HOH B 63 256 166 HOH HOH . T 3 HOH B 64 257 176 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 2 _atom_site.Cartn_x 43.136 _atom_site.Cartn_y 29.598 _atom_site.Cartn_z 122.966 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 58.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 190 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #