data_3KMA # _model_server_result.job_id kA0PNPEgBRwSjZiKsEXBtQ _model_server_result.datetime_utc '2024-10-12 12:27:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":120}' # _entry.id 3KMA # _exptl.entry_id 3KMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KMA _cell.length_a 60.403 _cell.length_b 60.403 _cell.length_c 102.417 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3KMA _atom_sites.fract_transf_matrix[1][1] 0.016555 _atom_sites.fract_transf_matrix[1][2] 0.009558 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019117 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 120 1 GOL GOL . D 3 SO4 A 1 121 1 SO4 SO4 . E 3 SO4 A 1 122 2 SO4 SO4 . F 4 CL A 1 123 3 CL CL . G 2 GOL B 1 120 2 GOL GOL . H 5 HOH A 1 124 2 HOH TIP . H 5 HOH A 2 125 3 HOH TIP . H 5 HOH A 3 126 5 HOH TIP . H 5 HOH A 4 127 7 HOH TIP . H 5 HOH A 5 128 128 HOH TIP . H 5 HOH A 6 129 8 HOH TIP . H 5 HOH A 7 130 130 HOH TIP . H 5 HOH A 8 131 9 HOH TIP . H 5 HOH A 9 132 10 HOH TIP . H 5 HOH A 10 133 14 HOH TIP . H 5 HOH A 11 134 134 HOH TIP . H 5 HOH A 12 135 15 HOH TIP . H 5 HOH A 13 136 136 HOH TIP . H 5 HOH A 14 137 22 HOH TIP . H 5 HOH A 15 138 138 HOH TIP . H 5 HOH A 16 139 139 HOH TIP . H 5 HOH A 17 140 140 HOH TIP . H 5 HOH A 18 141 23 HOH TIP . H 5 HOH A 19 142 142 HOH TIP . H 5 HOH A 20 143 24 HOH TIP . H 5 HOH A 21 144 26 HOH TIP . H 5 HOH A 22 145 145 HOH TIP . H 5 HOH A 23 146 27 HOH TIP . H 5 HOH A 24 147 29 HOH TIP . H 5 HOH A 25 148 148 HOH TIP . H 5 HOH A 26 149 149 HOH TIP . H 5 HOH A 27 150 30 HOH TIP . H 5 HOH A 28 151 31 HOH TIP . H 5 HOH A 29 152 33 HOH TIP . H 5 HOH A 30 153 153 HOH TIP . H 5 HOH A 31 154 34 HOH TIP . H 5 HOH A 32 155 35 HOH TIP . H 5 HOH A 33 156 39 HOH TIP . H 5 HOH A 34 157 40 HOH TIP . H 5 HOH A 35 158 41 HOH TIP . H 5 HOH A 36 159 42 HOH TIP . H 5 HOH A 37 160 45 HOH TIP . H 5 HOH A 38 161 161 HOH TIP . H 5 HOH A 39 162 48 HOH TIP . H 5 HOH A 40 163 50 HOH TIP . H 5 HOH A 41 164 56 HOH TIP . H 5 HOH A 42 165 165 HOH TIP . H 5 HOH A 43 166 166 HOH TIP . H 5 HOH A 44 167 167 HOH TIP . H 5 HOH A 45 168 58 HOH TIP . H 5 HOH A 46 169 169 HOH TIP . H 5 HOH A 47 170 59 HOH TIP . H 5 HOH A 48 171 60 HOH TIP . H 5 HOH A 49 172 61 HOH TIP . H 5 HOH A 50 173 173 HOH TIP . H 5 HOH A 51 174 64 HOH TIP . H 5 HOH A 52 175 175 HOH TIP . H 5 HOH A 53 176 67 HOH TIP . H 5 HOH A 54 177 71 HOH TIP . H 5 HOH A 55 178 178 HOH TIP . H 5 HOH A 56 179 72 HOH TIP . H 5 HOH A 57 180 74 HOH TIP . H 5 HOH A 58 181 181 HOH TIP . H 5 HOH A 59 182 82 HOH TIP . H 5 HOH A 60 183 83 HOH TIP . H 5 HOH A 61 184 84 HOH TIP . H 5 HOH A 62 185 185 HOH TIP . H 5 HOH A 63 186 85 HOH TIP . H 5 HOH A 64 187 88 HOH TIP . H 5 HOH A 65 188 188 HOH TIP . H 5 HOH A 66 189 189 HOH TIP . H 5 HOH A 67 190 190 HOH TIP . H 5 HOH A 68 191 191 HOH TIP . H 5 HOH A 69 192 89 HOH TIP . H 5 HOH A 70 193 90 HOH TIP . H 5 HOH A 71 194 194 HOH TIP . H 5 HOH A 72 195 195 HOH TIP . H 5 HOH A 73 196 94 HOH TIP . H 5 HOH A 74 197 96 HOH TIP . H 5 HOH A 75 198 99 HOH TIP . H 5 HOH A 76 199 199 HOH TIP . H 5 HOH A 77 200 100 HOH TIP . H 5 HOH A 78 201 201 HOH TIP . H 5 HOH A 79 202 104 HOH TIP . H 5 HOH A 80 203 203 HOH TIP . H 5 HOH A 81 204 204 HOH TIP . H 5 HOH A 82 205 205 HOH TIP . H 5 HOH A 83 206 109 HOH TIP . H 5 HOH A 84 207 110 HOH TIP . H 5 HOH A 85 208 208 HOH TIP . H 5 HOH A 86 209 209 HOH TIP . H 5 HOH A 87 210 112 HOH TIP . H 5 HOH A 88 211 211 HOH TIP . H 5 HOH A 89 212 212 HOH TIP . H 5 HOH A 90 213 114 HOH TIP . H 5 HOH A 91 214 214 HOH TIP . H 5 HOH A 92 215 215 HOH TIP . H 5 HOH A 93 216 117 HOH TIP . H 5 HOH A 94 217 217 HOH TIP . H 5 HOH A 95 218 218 HOH TIP . H 5 HOH A 96 219 219 HOH TIP . H 5 HOH A 97 220 122 HOH TIP . H 5 HOH A 98 223 223 HOH TIP . H 5 HOH A 99 224 224 HOH TIP . H 5 HOH A 100 225 225 HOH TIP . H 5 HOH A 101 226 226 HOH TIP . H 5 HOH A 102 230 230 HOH TIP . H 5 HOH A 103 231 231 HOH TIP . H 5 HOH A 104 233 233 HOH TIP . H 5 HOH A 105 234 234 HOH TIP . H 5 HOH A 106 237 237 HOH TIP . H 5 HOH A 107 238 238 HOH TIP . H 5 HOH A 108 240 240 HOH TIP . H 5 HOH A 109 241 241 HOH TIP . H 5 HOH A 110 242 242 HOH TIP . H 5 HOH A 111 245 245 HOH TIP . I 5 HOH B 1 121 4 HOH TIP . I 5 HOH B 2 122 6 HOH TIP . I 5 HOH B 3 123 11 HOH TIP . I 5 HOH B 4 124 124 HOH TIP . I 5 HOH B 5 125 125 HOH TIP . I 5 HOH B 6 126 12 HOH TIP . I 5 HOH B 7 127 127 HOH TIP . I 5 HOH B 8 128 13 HOH TIP . I 5 HOH B 9 129 16 HOH TIP . I 5 HOH B 10 130 17 HOH TIP . I 5 HOH B 11 131 131 HOH TIP . I 5 HOH B 12 132 132 HOH TIP . I 5 HOH B 13 133 133 HOH TIP . I 5 HOH B 14 134 18 HOH TIP . I 5 HOH B 15 135 135 HOH TIP . I 5 HOH B 16 136 20 HOH TIP . I 5 HOH B 17 137 137 HOH TIP . I 5 HOH B 18 138 21 HOH TIP . I 5 HOH B 19 139 25 HOH TIP . I 5 HOH B 20 140 32 HOH TIP . I 5 HOH B 21 141 141 HOH TIP . I 5 HOH B 22 142 36 HOH TIP . I 5 HOH B 23 143 143 HOH TIP . I 5 HOH B 24 144 37 HOH TIP . I 5 HOH B 25 145 43 HOH TIP . I 5 HOH B 26 146 146 HOH TIP . I 5 HOH B 27 147 147 HOH TIP . I 5 HOH B 28 148 44 HOH TIP . I 5 HOH B 29 149 49 HOH TIP . I 5 HOH B 30 150 150 HOH TIP . I 5 HOH B 31 151 151 HOH TIP . I 5 HOH B 32 152 152 HOH TIP . I 5 HOH B 33 153 51 HOH TIP . I 5 HOH B 34 154 154 HOH TIP . I 5 HOH B 35 155 155 HOH TIP . I 5 HOH B 36 156 53 HOH TIP . I 5 HOH B 37 157 157 HOH TIP . I 5 HOH B 38 158 158 HOH TIP . I 5 HOH B 39 159 159 HOH TIP . I 5 HOH B 40 160 160 HOH TIP . I 5 HOH B 41 161 54 HOH TIP . I 5 HOH B 42 162 162 HOH TIP . I 5 HOH B 43 163 163 HOH TIP . I 5 HOH B 44 164 164 HOH TIP . I 5 HOH B 45 165 55 HOH TIP . I 5 HOH B 46 166 57 HOH TIP . I 5 HOH B 47 167 62 HOH TIP . I 5 HOH B 48 168 168 HOH TIP . I 5 HOH B 49 169 65 HOH TIP . I 5 HOH B 50 170 170 HOH TIP . I 5 HOH B 51 171 171 HOH TIP . I 5 HOH B 52 172 66 HOH TIP . I 5 HOH B 53 173 68 HOH TIP . I 5 HOH B 54 174 69 HOH TIP . I 5 HOH B 55 175 70 HOH TIP . I 5 HOH B 56 176 176 HOH TIP . I 5 HOH B 57 177 177 HOH TIP . I 5 HOH B 58 178 75 HOH TIP . I 5 HOH B 59 179 179 HOH TIP . I 5 HOH B 60 180 180 HOH TIP . I 5 HOH B 61 181 77 HOH TIP . I 5 HOH B 62 182 182 HOH TIP . I 5 HOH B 63 183 183 HOH TIP . I 5 HOH B 64 184 184 HOH TIP . I 5 HOH B 65 185 78 HOH TIP . I 5 HOH B 66 186 186 HOH TIP . I 5 HOH B 67 187 187 HOH TIP . I 5 HOH B 68 188 79 HOH TIP . I 5 HOH B 69 189 81 HOH TIP . I 5 HOH B 70 190 86 HOH TIP . I 5 HOH B 71 191 92 HOH TIP . I 5 HOH B 72 192 192 HOH TIP . I 5 HOH B 73 193 193 HOH TIP . I 5 HOH B 74 194 93 HOH TIP . I 5 HOH B 75 195 95 HOH TIP . I 5 HOH B 76 196 196 HOH TIP . I 5 HOH B 77 197 197 HOH TIP . I 5 HOH B 78 198 198 HOH TIP . I 5 HOH B 79 199 97 HOH TIP . I 5 HOH B 80 200 200 HOH TIP . I 5 HOH B 81 201 98 HOH TIP . I 5 HOH B 82 202 202 HOH TIP . I 5 HOH B 83 203 101 HOH TIP . I 5 HOH B 84 204 102 HOH TIP . I 5 HOH B 85 205 103 HOH TIP . I 5 HOH B 86 206 206 HOH TIP . I 5 HOH B 87 207 106 HOH TIP . I 5 HOH B 88 208 107 HOH TIP . I 5 HOH B 89 209 111 HOH TIP . I 5 HOH B 90 210 113 HOH TIP . I 5 HOH B 91 211 116 HOH TIP . I 5 HOH B 92 212 118 HOH TIP . I 5 HOH B 93 216 216 HOH TIP . I 5 HOH B 94 220 220 HOH TIP . I 5 HOH B 95 221 221 HOH TIP . I 5 HOH B 96 222 222 HOH TIP . I 5 HOH B 97 227 227 HOH TIP . I 5 HOH B 98 228 228 HOH TIP . I 5 HOH B 99 229 229 HOH TIP . I 5 HOH B 100 232 232 HOH TIP . I 5 HOH B 101 235 235 HOH TIP . I 5 HOH B 102 236 236 HOH TIP . I 5 HOH B 103 239 239 HOH TIP . I 5 HOH B 104 243 243 HOH TIP . I 5 HOH B 105 244 244 HOH TIP . I 5 HOH B 106 246 246 HOH TIP . I 5 HOH B 107 247 247 HOH TIP . I 5 HOH B 108 248 248 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 2 -25.041 39.616 60.858 1 48.69 ? C1 GOL 120 B 1 HETATM 2 O O1 GOL . . . G 2 -24.605 40.95 61.134 1 47.8 ? O1 GOL 120 B 1 HETATM 3 C C2 GOL . . . G 2 -24.028 38.625 61.413 1 47.99 ? C2 GOL 120 B 1 HETATM 4 O O2 GOL . . . G 2 -23.932 38.811 62.822 1 48.77 ? O2 GOL 120 B 1 HETATM 5 C C3 GOL . . . G 2 -24.469 37.193 61.12 1 47.69 ? C3 GOL 120 B 1 HETATM 6 O O3 GOL . . . G 2 -23.506 36.277 61.635 1 44.68 ? O3 GOL 120 B 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #