data_3KMM
#
_model_server_result.job_id            5BffOtfEgOK4-Uq5F-clnA 
_model_server_result.datetime_utc      '2024-11-15 17:20:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kmm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
#
_entry.id    3KMM 
#
_exptl.entry_id    3KMM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              515.435 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(2,6-dichlorophenyl)-7-({4-[2-(diethylamino)ethoxy]phenyl}amino)-1-methyl-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KMM 
_cell.length_a            42.579 
_cell.length_b            74.16 
_cell.length_c            92.85 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KMM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 172 A GLU 393 1_555 A N PTR 173 A PTR 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C PTR 173 A PTR 394 1_555 A N THR 174 A THR 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C25 H28 Cl2 N6 O2' 
_chem_comp.formula_weight    515.435 
_chem_comp.id                LHL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(2,6-dichlorophenyl)-7-({4-[2-(diethylamino)ethoxy]phenyl}amino)-1-methyl-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 LHL doub 194 n y 
N1 C10 LHL sing 195 n y 
C2 N2 LHL sing 196 n n 
C2 N3 LHL sing 197 n y 
N2 C21 LHL sing 198 n n 
N3 C4 LHL doub 199 n y 
C4 N5 LHL sing 200 n n 
C4 C9 LHL sing 201 n y 
C5 N5 LHL sing 202 n n 
N5 C6 LHL sing 203 n n 
C6 O6 LHL doub 204 n n 
C6 N7 LHL sing 205 n n 
N7 C8 LHL sing 206 n n 
N7 C71 LHL sing 207 n n 
C8 C9 LHL sing 208 n n 
C9 C10 LHL doub 209 n y 
C21 C22 LHL doub 210 n y 
C21 C26 LHL sing 211 n y 
C22 C23 LHL sing 212 n y 
C23 C24 LHL doub 213 n y 
C24 O24 LHL sing 214 n n 
C24 C25 LHL sing 215 n y 
O24 C27 LHL sing 216 n n 
C25 C26 LHL doub 217 n y 
C27 C28 LHL sing 218 n n 
C28 N28 LHL sing 219 n n 
N28 C29 LHL sing 220 n n 
N28 C31 LHL sing 221 n n 
C29 C30 LHL sing 222 n n 
C31 C32 LHL sing 223 n n 
C71 C72 LHL doub 224 n y 
C71 C76 LHL sing 225 n y 
C72 CL72 LHL sing 226 n n 
C72 C73 LHL sing 227 n y 
C73 C74 LHL doub 228 n y 
C74 C75 LHL sing 229 n y 
C75 C76 LHL doub 230 n y 
C76 CL76 LHL sing 231 n n 
N2 HN2 LHL sing 232 n n 
C5 H5 LHL sing 233 n n 
C5 H5A LHL sing 234 n n 
C5 H5B LHL sing 235 n n 
C8 H8 LHL sing 236 n n 
C8 H8A LHL sing 237 n n 
C10 H10 LHL sing 238 n n 
C22 H22 LHL sing 239 n n 
C23 H23 LHL sing 240 n n 
C25 H25 LHL sing 241 n n 
C26 H26 LHL sing 242 n n 
C27 H27 LHL sing 243 n n 
C27 H27A LHL sing 244 n n 
C28 H28 LHL sing 245 n n 
C28 H28A LHL sing 246 n n 
C29 H29 LHL sing 247 n n 
C29 H29A LHL sing 248 n n 
C30 H30 LHL sing 249 n n 
C30 H30A LHL sing 250 n n 
C30 H30B LHL sing 251 n n 
C31 H31 LHL sing 252 n n 
C31 H31A LHL sing 253 n n 
C32 H32 LHL sing 254 n n 
C32 H32A LHL sing 255 n n 
C32 H32B LHL sing 256 n n 
C73 H73 LHL sing 257 n n 
C74 H74 LHL sing 258 n n 
C75 H75 LHL sing 259 n n 
#
_atom_sites.entry_id                     3KMM 
_atom_sites.fract_transf_matrix[1][1]    0.023486 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013484 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01077 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LHL A 1 1 1 LHL LHL . 
C 3 SO4 A 1 901 901 SO4 SO4 . 
D 4 HOH A 1 2 2 HOH HOH . 
D 4 HOH A 2 3 3 HOH HOH . 
D 4 HOH A 3 4 4 HOH HOH . 
D 4 HOH A 4 5 5 HOH HOH . 
D 4 HOH A 5 6 6 HOH HOH . 
D 4 HOH A 6 7 7 HOH HOH . 
D 4 HOH A 7 8 8 HOH HOH . 
D 4 HOH A 8 9 9 HOH HOH . 
D 4 HOH A 9 10 10 HOH HOH . 
D 4 HOH A 10 11 11 HOH HOH . 
D 4 HOH A 11 12 12 HOH HOH . 
D 4 HOH A 12 13 13 HOH HOH . 
D 4 HOH A 13 14 14 HOH HOH . 
D 4 HOH A 14 15 15 HOH HOH . 
D 4 HOH A 15 16 16 HOH HOH . 
D 4 HOH A 16 17 17 HOH HOH . 
D 4 HOH A 17 18 18 HOH HOH . 
D 4 HOH A 18 19 19 HOH HOH . 
D 4 HOH A 19 20 20 HOH HOH . 
D 4 HOH A 20 21 21 HOH HOH . 
D 4 HOH A 21 22 22 HOH HOH . 
D 4 HOH A 22 23 23 HOH HOH . 
D 4 HOH A 23 24 24 HOH HOH . 
D 4 HOH A 24 25 25 HOH HOH . 
D 4 HOH A 25 26 26 HOH HOH . 
D 4 HOH A 26 27 27 HOH HOH . 
D 4 HOH A 27 28 28 HOH HOH . 
D 4 HOH A 28 29 29 HOH HOH . 
D 4 HOH A 29 30 30 HOH HOH . 
D 4 HOH A 30 31 31 HOH HOH . 
D 4 HOH A 31 32 32 HOH HOH . 
D 4 HOH A 32 33 33 HOH HOH . 
D 4 HOH A 33 34 34 HOH HOH . 
D 4 HOH A 34 35 35 HOH HOH . 
D 4 HOH A 35 36 36 HOH HOH . 
D 4 HOH A 36 37 37 HOH HOH . 
D 4 HOH A 37 38 38 HOH HOH . 
D 4 HOH A 38 39 39 HOH HOH . 
D 4 HOH A 39 40 40 HOH HOH . 
D 4 HOH A 40 41 41 HOH HOH . 
D 4 HOH A 41 42 42 HOH HOH . 
D 4 HOH A 42 43 43 HOH HOH . 
D 4 HOH A 43 44 44 HOH HOH . 
D 4 HOH A 44 45 45 HOH HOH . 
D 4 HOH A 45 46 46 HOH HOH . 
D 4 HOH A 46 47 47 HOH HOH . 
D 4 HOH A 47 48 48 HOH HOH . 
D 4 HOH A 48 49 49 HOH HOH . 
D 4 HOH A 49 50 50 HOH HOH . 
D 4 HOH A 50 51 51 HOH HOH . 
D 4 HOH A 51 52 52 HOH HOH . 
D 4 HOH A 52 53 53 HOH HOH . 
D 4 HOH A 53 54 54 HOH HOH . 
D 4 HOH A 54 55 55 HOH HOH . 
D 4 HOH A 55 56 56 HOH HOH . 
D 4 HOH A 56 57 57 HOH HOH . 
D 4 HOH A 57 58 58 HOH HOH . 
D 4 HOH A 58 59 59 HOH HOH . 
D 4 HOH A 59 60 60 HOH HOH . 
D 4 HOH A 60 61 61 HOH HOH . 
D 4 HOH A 61 62 62 HOH HOH . 
D 4 HOH A 62 63 63 HOH HOH . 
D 4 HOH A 63 64 64 HOH HOH . 
D 4 HOH A 64 65 65 HOH HOH . 
D 4 HOH A 65 66 66 HOH HOH . 
D 4 HOH A 66 67 67 HOH HOH . 
D 4 HOH A 67 68 68 HOH HOH . 
D 4 HOH A 68 69 69 HOH HOH . 
D 4 HOH A 69 70 70 HOH HOH . 
D 4 HOH A 70 71 71 HOH HOH . 
D 4 HOH A 71 72 72 HOH HOH . 
D 4 HOH A 72 73 73 HOH HOH . 
D 4 HOH A 73 74 74 HOH HOH . 
D 4 HOH A 74 75 75 HOH HOH . 
D 4 HOH A 75 76 76 HOH HOH . 
D 4 HOH A 76 77 77 HOH HOH . 
D 4 HOH A 77 78 78 HOH HOH . 
D 4 HOH A 78 79 79 HOH HOH . 
D 4 HOH A 79 80 80 HOH HOH . 
D 4 HOH A 80 81 81 HOH HOH . 
D 4 HOH A 81 82 82 HOH HOH . 
D 4 HOH A 82 83 83 HOH HOH . 
D 4 HOH A 83 84 84 HOH HOH . 
D 4 HOH A 84 85 85 HOH HOH . 
D 4 HOH A 85 86 86 HOH HOH . 
D 4 HOH A 86 87 87 HOH HOH . 
D 4 HOH A 87 88 88 HOH HOH . 
D 4 HOH A 88 89 89 HOH HOH . 
D 4 HOH A 89 90 90 HOH HOH . 
D 4 HOH A 90 91 91 HOH HOH . 
D 4 HOH A 91 92 92 HOH HOH . 
D 4 HOH A 92 93 93 HOH HOH . 
D 4 HOH A 93 94 94 HOH HOH . 
D 4 HOH A 94 95 95 HOH HOH . 
D 4 HOH A 95 96 96 HOH HOH . 
D 4 HOH A 96 97 97 HOH HOH . 
D 4 HOH A 97 98 98 HOH HOH . 
D 4 HOH A 98 99 99 HOH HOH . 
D 4 HOH A 99 100 100 HOH HOH . 
D 4 HOH A 100 101 101 HOH HOH . 
D 4 HOH A 101 102 102 HOH HOH . 
D 4 HOH A 102 103 103 HOH HOH . 
D 4 HOH A 103 104 104 HOH HOH . 
D 4 HOH A 104 105 105 HOH HOH . 
D 4 HOH A 105 106 106 HOH HOH . 
D 4 HOH A 106 107 107 HOH HOH . 
D 4 HOH A 107 108 108 HOH HOH . 
D 4 HOH A 108 109 109 HOH HOH . 
D 4 HOH A 109 110 110 HOH HOH . 
D 4 HOH A 110 111 111 HOH HOH . 
D 4 HOH A 111 112 112 HOH HOH . 
D 4 HOH A 112 113 113 HOH HOH . 
D 4 HOH A 113 114 114 HOH HOH . 
D 4 HOH A 114 115 115 HOH HOH . 
D 4 HOH A 115 510 502 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LHL . . . B 2 24.871 35.3 82.47 1 16.38 ? N1 LHL 1 A 1 
HETATM 2 C C2 LHL . . . B 2 25.873 35.924 83.137 1 19.11 ? C2 LHL 1 A 1 
HETATM 3 N N2 LHL . . . B 2 27.193 35.642 82.675 1 20.94 ? N2 LHL 1 A 1 
HETATM 4 N N3 LHL . . . B 2 25.686 36.767 84.181 1 17.9 ? N3 LHL 1 A 1 
HETATM 5 C C4 LHL . . . B 2 24.42 36.964 84.56 1 17.21 ? C4 LHL 1 A 1 
HETATM 6 C C5 LHL . . . B 2 25.274 38.648 86.187 1 15.25 ? C5 LHL 1 A 1 
HETATM 7 N N5 LHL . . . B 2 24.172 37.844 85.65 1 16.16 ? N5 LHL 1 A 1 
HETATM 8 C C6 LHL . . . B 2 22.902 37.945 86.264 1 16.12 ? C6 LHL 1 A 1 
HETATM 9 O O6 LHL . . . B 2 22.72 38.695 87.233 1 15.09 ? O6 LHL 1 A 1 
HETATM 10 N N7 LHL . . . B 2 21.862 37.149 85.743 1 16.8 ? N7 LHL 1 A 1 
HETATM 11 C C8 LHL . . . B 2 21.942 36.592 84.371 1 14.66 ? C8 LHL 1 A 1 
HETATM 12 C C9 LHL . . . B 2 23.357 36.345 83.929 1 16.56 ? C9 LHL 1 A 1 
HETATM 13 C C10 LHL . . . B 2 23.625 35.526 82.863 1 16.61 ? C10 LHL 1 A 1 
HETATM 14 C C21 LHL . . . B 2 28.377 36.362 83.109 1 21.12 ? C21 LHL 1 A 1 
HETATM 15 C C22 LHL . . . B 2 29.604 35.902 82.621 1 20.54 ? C22 LHL 1 A 1 
HETATM 16 C C23 LHL . . . B 2 30.769 36.543 82.987 1 22.48 ? C23 LHL 1 A 1 
HETATM 17 C C24 LHL . . . B 2 30.706 37.643 83.832 1 24.94 ? C24 LHL 1 A 1 
HETATM 18 O O24 LHL . . . B 2 31.897 38.275 84.172 1 28.5 ? O24 LHL 1 A 1 
HETATM 19 C C25 LHL . . . B 2 29.484 38.119 84.333 1 22.36 ? C25 LHL 1 A 1 
HETATM 20 C C26 LHL . . . B 2 28.3 37.472 83.965 1 20.51 ? C26 LHL 1 A 1 
HETATM 21 C C27 LHL . . . B 2 31.877 38.84 85.483 1 34.19 ? C27 LHL 1 A 1 
HETATM 22 C C28 LHL . . . B 2 33.214 38.589 86.213 1 37.57 ? C28 LHL 1 A 1 
HETATM 23 N N28 LHL . . . B 2 34.287 39.459 85.667 1 40.77 ? N28 LHL 1 A 1 
HETATM 24 C C29 LHL . . . B 2 34.918 38.842 84.479 1 41.2 ? C29 LHL 1 A 1 
HETATM 25 C C30 LHL . . . B 2 35.922 39.815 83.842 1 40.1 ? C30 LHL 1 A 1 
HETATM 26 C C31 LHL . . . B 2 35.308 39.754 86.699 1 40.12 ? C31 LHL 1 A 1 
HETATM 27 C C32 LHL . . . B 2 34.684 40.511 87.881 1 40.12 ? C32 LHL 1 A 1 
HETATM 28 C C71 LHL . . . B 2 20.571 37.154 86.414 1 19.82 ? C71 LHL 1 A 1 
HETATM 29 C C72 LHL . . . B 2 19.666 38.201 86.174 1 21.57 ? C72 LHL 1 A 1 
HETATM 30 CL CL72 LHL . . . B 2 20.101 39.524 85.114 1 27.3 ? CL72 LHL 1 A 1 
HETATM 31 C C73 LHL . . . B 2 18.421 38.199 86.824 1 20.32 ? C73 LHL 1 A 1 
HETATM 32 C C74 LHL . . . B 2 18.099 37.165 87.707 1 16.22 ? C74 LHL 1 A 1 
HETATM 33 C C75 LHL . . . B 2 18.999 36.125 87.95 1 16.9 ? C75 LHL 1 A 1 
HETATM 34 C C76 LHL . . . B 2 20.24 36.116 87.303 1 18.19 ? C76 LHL 1 A 1 
HETATM 35 CL CL76 LHL . . . B 2 21.357 34.821 87.595 1 14.02 ? CL76 LHL 1 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           35 
#