data_3KMO # _model_server_result.job_id TUuwJz3-PqXNHxEisuZTxQ _model_server_result.datetime_utc '2024-11-24 18:20:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kmo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":212}' # _entry.id 3KMO # _exptl.entry_id 3KMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.07 _cell.angle_gamma 90 _cell.entry_id 3KMO _cell.length_a 75.902 _cell.length_b 89.348 _cell.length_c 69.383 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TRP 28 A TRP 28 1_555 E CA CA . A CA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc2 A O GLU 30 A GLU 30 1_555 D CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A O GLY 77 A GLY 77 1_555 H CA CA . A CA 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc4 A OE1 GLN 147 A GLN 147 1_555 H CA CA . A CA 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc5 A OD1 ASP 171 A ASP 171 1_555 F CA CA . A CA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc6 D CA CA . A CA 211 1_555 M O HOH . A HOH 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc7 H CA CA . A CA 215 1_555 M O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc8 B O TRP 28 B TRP 28 1_555 J CA CA . B CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc9 B O GLY 77 B GLY 77 1_555 K CA CA . B CA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc10 B OE1 GLN 147 B GLN 147 1_555 K CA CA . B CA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc11 K CA CA . B CA 212 1_555 N O HOH . B HOH 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KMO _atom_sites.fract_transf_matrix[1][1] 0.013175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000016 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSH A 1 210 210 GSH GTT . D 3 CA A 1 211 1 CA CA . E 3 CA A 1 212 1 CA CA . F 3 CA A 1 213 1 CA CA . G 4 EAA A 1 214 1 EAA EAA . H 3 CA A 1 215 1 CA CA . I 2 GSH B 1 210 210 GSH GTT . J 3 CA B 1 211 1 CA CA . K 3 CA B 1 212 1 CA CA . L 4 EAA B 1 213 1 EAA EAA . M 5 HOH A 1 216 3 HOH HOH . M 5 HOH A 2 217 4 HOH HOH . M 5 HOH A 3 218 8 HOH HOH . M 5 HOH A 4 219 10 HOH HOH . M 5 HOH A 5 220 11 HOH HOH . M 5 HOH A 6 221 13 HOH HOH . M 5 HOH A 7 222 15 HOH HOH . M 5 HOH A 8 223 17 HOH HOH . M 5 HOH A 9 224 18 HOH HOH . M 5 HOH A 10 225 19 HOH HOH . M 5 HOH A 11 226 20 HOH HOH . M 5 HOH A 12 227 21 HOH HOH . M 5 HOH A 13 228 22 HOH HOH . M 5 HOH A 14 229 23 HOH HOH . M 5 HOH A 15 230 24 HOH HOH . M 5 HOH A 16 231 25 HOH HOH . M 5 HOH A 17 232 26 HOH HOH . M 5 HOH A 18 233 27 HOH HOH . M 5 HOH A 19 234 28 HOH HOH . M 5 HOH A 20 235 33 HOH HOH . M 5 HOH A 21 236 34 HOH HOH . M 5 HOH A 22 237 35 HOH HOH . M 5 HOH A 23 238 36 HOH HOH . M 5 HOH A 24 239 37 HOH HOH . M 5 HOH A 25 240 39 HOH HOH . M 5 HOH A 26 241 40 HOH HOH . M 5 HOH A 27 242 41 HOH HOH . M 5 HOH A 28 243 42 HOH HOH . M 5 HOH A 29 244 56 HOH HOH . M 5 HOH A 30 245 57 HOH HOH . M 5 HOH A 31 246 58 HOH HOH . M 5 HOH A 32 247 59 HOH HOH . M 5 HOH A 33 248 60 HOH HOH . M 5 HOH A 34 249 61 HOH HOH . M 5 HOH A 35 250 62 HOH HOH . M 5 HOH A 36 251 66 HOH HOH . M 5 HOH A 37 252 67 HOH HOH . M 5 HOH A 38 253 71 HOH HOH . M 5 HOH A 39 254 72 HOH HOH . M 5 HOH A 40 255 86 HOH HOH . M 5 HOH A 41 256 87 HOH HOH . M 5 HOH A 42 257 88 HOH HOH . M 5 HOH A 43 258 89 HOH HOH . M 5 HOH A 44 260 91 HOH HOH . M 5 HOH A 45 261 92 HOH HOH . M 5 HOH A 46 262 94 HOH HOH . M 5 HOH A 47 263 96 HOH HOH . M 5 HOH A 48 264 97 HOH HOH . M 5 HOH A 49 265 98 HOH HOH . M 5 HOH A 50 266 99 HOH HOH . M 5 HOH A 51 267 100 HOH HOH . M 5 HOH A 52 268 101 HOH HOH . M 5 HOH A 53 269 113 HOH HOH . M 5 HOH A 54 270 114 HOH HOH . M 5 HOH A 55 271 115 HOH HOH . M 5 HOH A 56 272 116 HOH HOH . M 5 HOH A 57 273 117 HOH HOH . M 5 HOH A 58 274 118 HOH HOH . M 5 HOH A 59 275 119 HOH HOH . M 5 HOH A 60 276 120 HOH HOH . M 5 HOH A 61 277 121 HOH HOH . M 5 HOH A 62 278 122 HOH HOH . M 5 HOH A 63 279 129 HOH HOH . M 5 HOH A 64 280 130 HOH HOH . M 5 HOH A 65 281 143 HOH HOH . M 5 HOH A 66 282 144 HOH HOH . M 5 HOH A 67 283 145 HOH HOH . M 5 HOH A 68 284 146 HOH HOH . M 5 HOH A 69 285 147 HOH HOH . M 5 HOH A 70 286 148 HOH HOH . M 5 HOH A 71 287 149 HOH HOH . M 5 HOH A 72 288 150 HOH HOH . M 5 HOH A 73 289 151 HOH HOH . M 5 HOH A 74 290 152 HOH HOH . M 5 HOH A 75 291 153 HOH HOH . M 5 HOH A 76 292 154 HOH HOH . M 5 HOH A 77 293 155 HOH HOH . M 5 HOH A 78 294 156 HOH HOH . M 5 HOH A 79 295 157 HOH HOH . M 5 HOH A 80 296 158 HOH HOH . M 5 HOH A 81 297 159 HOH HOH . M 5 HOH A 82 298 160 HOH HOH . M 5 HOH A 83 299 161 HOH HOH . M 5 HOH A 84 300 162 HOH HOH . M 5 HOH A 85 301 163 HOH HOH . M 5 HOH A 86 302 164 HOH HOH . M 5 HOH A 87 303 165 HOH HOH . M 5 HOH A 88 304 166 HOH HOH . M 5 HOH A 89 305 168 HOH HOH . M 5 HOH A 90 306 169 HOH HOH . M 5 HOH A 91 307 178 HOH HOH . M 5 HOH A 92 308 179 HOH HOH . M 5 HOH A 93 309 183 HOH HOH . M 5 HOH A 94 310 184 HOH HOH . M 5 HOH A 95 311 185 HOH HOH . M 5 HOH A 96 312 192 HOH HOH . M 5 HOH A 97 313 193 HOH HOH . M 5 HOH A 98 314 194 HOH HOH . M 5 HOH A 99 315 195 HOH HOH . M 5 HOH A 100 316 196 HOH HOH . M 5 HOH A 101 317 202 HOH HOH . M 5 HOH A 102 318 203 HOH HOH . M 5 HOH A 103 319 204 HOH HOH . M 5 HOH A 104 320 205 HOH HOH . M 5 HOH A 105 321 206 HOH HOH . M 5 HOH A 106 322 207 HOH HOH . M 5 HOH A 107 323 210 HOH HOH . N 5 HOH B 1 214 1 HOH HOH . N 5 HOH B 2 215 2 HOH HOH . N 5 HOH B 3 216 5 HOH HOH . N 5 HOH B 4 217 6 HOH HOH . N 5 HOH B 5 218 7 HOH HOH . N 5 HOH B 6 219 9 HOH HOH . N 5 HOH B 7 220 12 HOH HOH . N 5 HOH B 8 221 14 HOH HOH . N 5 HOH B 9 222 16 HOH HOH . N 5 HOH B 10 223 29 HOH HOH . N 5 HOH B 11 224 30 HOH HOH . N 5 HOH B 12 225 31 HOH HOH . N 5 HOH B 13 226 32 HOH HOH . N 5 HOH B 14 227 38 HOH HOH . N 5 HOH B 15 228 43 HOH HOH . N 5 HOH B 16 229 44 HOH HOH . N 5 HOH B 17 230 45 HOH HOH . N 5 HOH B 18 231 46 HOH HOH . N 5 HOH B 19 232 47 HOH HOH . N 5 HOH B 20 233 48 HOH HOH . N 5 HOH B 21 234 49 HOH HOH . N 5 HOH B 22 235 50 HOH HOH . N 5 HOH B 23 236 51 HOH HOH . N 5 HOH B 24 237 52 HOH HOH . N 5 HOH B 25 238 53 HOH HOH . N 5 HOH B 26 239 54 HOH HOH . N 5 HOH B 27 240 55 HOH HOH . N 5 HOH B 28 241 63 HOH HOH . N 5 HOH B 29 242 64 HOH HOH . N 5 HOH B 30 243 65 HOH HOH . N 5 HOH B 31 244 68 HOH HOH . N 5 HOH B 32 245 69 HOH HOH . N 5 HOH B 33 246 70 HOH HOH . N 5 HOH B 34 247 73 HOH HOH . N 5 HOH B 35 248 74 HOH HOH . N 5 HOH B 36 249 75 HOH HOH . N 5 HOH B 37 250 76 HOH HOH . N 5 HOH B 38 251 77 HOH HOH . N 5 HOH B 39 252 78 HOH HOH . N 5 HOH B 40 253 79 HOH HOH . N 5 HOH B 41 254 80 HOH HOH . N 5 HOH B 42 255 81 HOH HOH . N 5 HOH B 43 256 82 HOH HOH . N 5 HOH B 44 257 83 HOH HOH . N 5 HOH B 45 258 84 HOH HOH . N 5 HOH B 46 259 90 HOH HOH . N 5 HOH B 47 260 93 HOH HOH . N 5 HOH B 48 261 95 HOH HOH . N 5 HOH B 49 262 102 HOH HOH . N 5 HOH B 50 263 103 HOH HOH . N 5 HOH B 51 264 104 HOH HOH . N 5 HOH B 52 265 105 HOH HOH . N 5 HOH B 53 266 106 HOH HOH . N 5 HOH B 54 267 107 HOH HOH . N 5 HOH B 55 268 108 HOH HOH . N 5 HOH B 56 269 109 HOH HOH . N 5 HOH B 57 270 110 HOH HOH . N 5 HOH B 58 271 111 HOH HOH . N 5 HOH B 59 272 112 HOH HOH . N 5 HOH B 60 273 123 HOH HOH . N 5 HOH B 61 274 124 HOH HOH . N 5 HOH B 62 275 125 HOH HOH . N 5 HOH B 63 276 126 HOH HOH . N 5 HOH B 64 277 127 HOH HOH . N 5 HOH B 65 278 128 HOH HOH . N 5 HOH B 66 279 131 HOH HOH . N 5 HOH B 67 280 132 HOH HOH . N 5 HOH B 68 281 133 HOH HOH . N 5 HOH B 69 282 134 HOH HOH . N 5 HOH B 70 283 135 HOH HOH . N 5 HOH B 71 284 136 HOH HOH . N 5 HOH B 72 285 137 HOH HOH . N 5 HOH B 73 286 138 HOH HOH . N 5 HOH B 74 287 139 HOH HOH . N 5 HOH B 75 288 140 HOH HOH . N 5 HOH B 76 289 141 HOH HOH . N 5 HOH B 77 290 142 HOH HOH . N 5 HOH B 78 291 167 HOH HOH . N 5 HOH B 79 292 170 HOH HOH . N 5 HOH B 80 293 171 HOH HOH . N 5 HOH B 81 294 172 HOH HOH . N 5 HOH B 82 295 173 HOH HOH . N 5 HOH B 83 296 174 HOH HOH . N 5 HOH B 84 297 175 HOH HOH . N 5 HOH B 85 298 176 HOH HOH . N 5 HOH B 86 299 177 HOH HOH . N 5 HOH B 87 300 180 HOH HOH . N 5 HOH B 88 301 181 HOH HOH . N 5 HOH B 89 302 182 HOH HOH . N 5 HOH B 90 303 186 HOH HOH . N 5 HOH B 91 304 187 HOH HOH . N 5 HOH B 92 305 188 HOH HOH . N 5 HOH B 93 306 189 HOH HOH . N 5 HOH B 94 307 190 HOH HOH . N 5 HOH B 95 308 191 HOH HOH . N 5 HOH B 96 309 197 HOH HOH . N 5 HOH B 97 310 198 HOH HOH . N 5 HOH B 98 311 199 HOH HOH . N 5 HOH B 99 312 200 HOH HOH . N 5 HOH B 100 313 201 HOH HOH . N 5 HOH B 101 314 208 HOH HOH . N 5 HOH B 102 315 209 HOH HOH . N 5 HOH B 103 316 211 HOH HOH . N 5 HOH B 104 317 85 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 3 _atom_site.Cartn_x 38.728 _atom_site.Cartn_y 24.558 _atom_site.Cartn_z 18.729 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 212 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #