data_3KMS
#
_model_server_result.job_id            dmmQJ1ZvjzY3j0IVawcEFA 
_model_server_result.datetime_utc      '2024-11-22 07:50:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kms 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":950}' 
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_entry.id    3KMS 
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_exptl.entry_id    3KMS 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3KMS 
_cell.length_a            93.951 
_cell.length_b            93.951 
_cell.length_c            99.997 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KMS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 238 A ASP 238 1_555 D MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc2 A OD1 ASP 240 A ASP 240 1_555 D MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? 
hydrog WATSON-CRICK hydrog1 B N1 G 3 B G 905 1_555 C N3 C 5 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N2 G 3 B G 905 1_555 C O2 C 5 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B O6 G 3 B G 905 1_555 C N4 C 5 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N1 G 4 B G 906 1_555 C N3 C 4 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B N2 G 4 B G 906 1_555 C O2 C 4 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B O6 G 4 B G 906 1_555 C N4 C 4 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B N1 G 5 B G 907 1_555 C N3 C 3 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N2 G 5 B G 907 1_555 C O2 C 3 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B O6 G 5 B G 907 1_555 C N4 C 3 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N3 C 6 B C 908 1_555 C N1 G 2 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B N4 C 6 B C 908 1_555 C O6 G 2 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B O2 C 6 B C 908 1_555 C N2 G 2 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B N3 C 7 B C 909 1_555 C N1 G 1 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B N4 C 7 B C 909 1_555 C O6 G 1 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B O2 C 7 B C 909 1_555 C N2 G 1 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3KMS 
_atom_sites.fract_transf_matrix[1][1]    0.010644 
_atom_sites.fract_transf_matrix[1][2]    0.006145 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01229 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MG A 1 950 950 MG MG . 
E 5 HOH A 1 500 500 HOH HOH . 
E 5 HOH A 2 501 501 HOH HOH . 
E 5 HOH A 3 504 504 HOH HOH . 
E 5 HOH A 4 505 505 HOH HOH . 
E 5 HOH A 5 506 506 HOH HOH . 
E 5 HOH A 6 508 508 HOH HOH . 
E 5 HOH A 7 509 509 HOH HOH . 
E 5 HOH A 8 510 510 HOH HOH . 
E 5 HOH A 9 512 512 HOH HOH . 
E 5 HOH A 10 513 513 HOH HOH . 
E 5 HOH A 11 514 514 HOH HOH . 
E 5 HOH A 12 515 515 HOH HOH . 
E 5 HOH A 13 519 519 HOH HOH . 
E 5 HOH A 14 520 520 HOH HOH . 
E 5 HOH A 15 521 521 HOH HOH . 
E 5 HOH A 16 522 522 HOH HOH . 
E 5 HOH A 17 523 523 HOH HOH . 
E 5 HOH A 18 524 524 HOH HOH . 
E 5 HOH A 19 525 525 HOH HOH . 
E 5 HOH A 20 530 530 HOH HOH . 
E 5 HOH A 21 531 531 HOH HOH . 
E 5 HOH A 22 534 534 HOH HOH . 
E 5 HOH A 23 537 537 HOH HOH . 
E 5 HOH A 24 538 538 HOH HOH . 
E 5 HOH A 25 541 541 HOH HOH . 
E 5 HOH A 26 552 552 HOH HOH . 
E 5 HOH A 27 557 557 HOH HOH . 
E 5 HOH A 28 558 558 HOH HOH . 
E 5 HOH A 29 563 563 HOH HOH . 
E 5 HOH A 30 566 566 HOH HOH . 
E 5 HOH A 31 568 568 HOH HOH . 
E 5 HOH A 32 574 574 HOH HOH . 
E 5 HOH A 33 576 576 HOH HOH . 
E 5 HOH A 34 579 579 HOH HOH . 
E 5 HOH A 35 580 580 HOH HOH . 
E 5 HOH A 36 588 588 HOH HOH . 
E 5 HOH A 37 595 595 HOH HOH . 
E 5 HOH A 38 599 599 HOH HOH . 
E 5 HOH A 39 604 604 HOH HOH . 
E 5 HOH A 40 605 605 HOH HOH . 
E 5 HOH A 41 606 606 HOH HOH . 
E 5 HOH A 42 607 607 HOH HOH . 
E 5 HOH A 43 608 608 HOH HOH . 
E 5 HOH A 44 609 609 HOH HOH . 
E 5 HOH A 45 613 613 HOH HOH . 
E 5 HOH A 46 615 615 HOH HOH . 
E 5 HOH A 47 620 620 HOH HOH . 
E 5 HOH A 48 628 628 HOH HOH . 
E 5 HOH A 49 629 629 HOH HOH . 
E 5 HOH A 50 631 631 HOH HOH . 
E 5 HOH A 51 635 635 HOH HOH . 
E 5 HOH A 52 636 636 HOH HOH . 
E 5 HOH A 53 641 641 HOH HOH . 
E 5 HOH A 54 643 643 HOH HOH . 
E 5 HOH A 55 644 644 HOH HOH . 
E 5 HOH A 56 646 646 HOH HOH . 
E 5 HOH A 57 656 656 HOH HOH . 
E 5 HOH A 58 658 658 HOH HOH . 
E 5 HOH A 59 659 659 HOH HOH . 
F 5 HOH B 1 507 507 HOH HOH . 
F 5 HOH B 2 516 516 HOH HOH . 
F 5 HOH B 3 544 544 HOH HOH . 
F 5 HOH B 4 594 594 HOH HOH . 
F 5 HOH B 5 619 619 HOH HOH . 
G 5 HOH C 1 517 517 HOH HOH . 
G 5 HOH C 2 540 540 HOH HOH . 
G 5 HOH C 3 584 584 HOH HOH . 
G 5 HOH C 4 589 589 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               28.501 
_atom_site.Cartn_y               28.716 
_atom_site.Cartn_z               16.233 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        67.35 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           950 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#