data_3KMS # _model_server_result.job_id GbpQFlkY3DvO9gSIv8nDog _model_server_result.datetime_utc '2024-12-14 21:53:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kms # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":950}' # _entry.id 3KMS # _exptl.entry_id 3KMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KMS _cell.length_a 93.951 _cell.length_b 93.951 _cell.length_c 99.997 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 238 A ASP 238 1_555 D MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 A OD1 ASP 240 A ASP 240 1_555 D MG MG . A MG 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? hydrog WATSON-CRICK hydrog1 B N1 G 3 B G 905 1_555 C N3 C 5 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 G 3 B G 905 1_555 C O2 C 5 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 G 3 B G 905 1_555 C N4 C 5 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 G 4 B G 906 1_555 C N3 C 4 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 G 4 B G 906 1_555 C O2 C 4 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 G 4 B G 906 1_555 C N4 C 4 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 G 5 B G 907 1_555 C N3 C 3 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 G 5 B G 907 1_555 C O2 C 3 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 G 5 B G 907 1_555 C N4 C 3 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 C 6 B C 908 1_555 C N1 G 2 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N4 C 6 B C 908 1_555 C O6 G 2 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O2 C 6 B C 908 1_555 C N2 G 2 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 C 7 B C 909 1_555 C N1 G 1 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N4 C 7 B C 909 1_555 C O6 G 1 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O2 C 7 B C 909 1_555 C N2 G 1 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KMS _atom_sites.fract_transf_matrix[1][1] 0.010644 _atom_sites.fract_transf_matrix[1][2] 0.006145 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 950 950 MG MG . E 5 HOH A 1 500 500 HOH HOH . E 5 HOH A 2 501 501 HOH HOH . E 5 HOH A 3 504 504 HOH HOH . E 5 HOH A 4 505 505 HOH HOH . E 5 HOH A 5 506 506 HOH HOH . E 5 HOH A 6 508 508 HOH HOH . E 5 HOH A 7 509 509 HOH HOH . E 5 HOH A 8 510 510 HOH HOH . E 5 HOH A 9 512 512 HOH HOH . E 5 HOH A 10 513 513 HOH HOH . E 5 HOH A 11 514 514 HOH HOH . E 5 HOH A 12 515 515 HOH HOH . E 5 HOH A 13 519 519 HOH HOH . E 5 HOH A 14 520 520 HOH HOH . E 5 HOH A 15 521 521 HOH HOH . E 5 HOH A 16 522 522 HOH HOH . E 5 HOH A 17 523 523 HOH HOH . E 5 HOH A 18 524 524 HOH HOH . E 5 HOH A 19 525 525 HOH HOH . E 5 HOH A 20 530 530 HOH HOH . E 5 HOH A 21 531 531 HOH HOH . E 5 HOH A 22 534 534 HOH HOH . E 5 HOH A 23 537 537 HOH HOH . E 5 HOH A 24 538 538 HOH HOH . E 5 HOH A 25 541 541 HOH HOH . E 5 HOH A 26 552 552 HOH HOH . E 5 HOH A 27 557 557 HOH HOH . E 5 HOH A 28 558 558 HOH HOH . E 5 HOH A 29 563 563 HOH HOH . E 5 HOH A 30 566 566 HOH HOH . E 5 HOH A 31 568 568 HOH HOH . E 5 HOH A 32 574 574 HOH HOH . E 5 HOH A 33 576 576 HOH HOH . E 5 HOH A 34 579 579 HOH HOH . E 5 HOH A 35 580 580 HOH HOH . E 5 HOH A 36 588 588 HOH HOH . E 5 HOH A 37 595 595 HOH HOH . E 5 HOH A 38 599 599 HOH HOH . E 5 HOH A 39 604 604 HOH HOH . E 5 HOH A 40 605 605 HOH HOH . E 5 HOH A 41 606 606 HOH HOH . E 5 HOH A 42 607 607 HOH HOH . E 5 HOH A 43 608 608 HOH HOH . E 5 HOH A 44 609 609 HOH HOH . E 5 HOH A 45 613 613 HOH HOH . E 5 HOH A 46 615 615 HOH HOH . E 5 HOH A 47 620 620 HOH HOH . E 5 HOH A 48 628 628 HOH HOH . E 5 HOH A 49 629 629 HOH HOH . E 5 HOH A 50 631 631 HOH HOH . E 5 HOH A 51 635 635 HOH HOH . E 5 HOH A 52 636 636 HOH HOH . E 5 HOH A 53 641 641 HOH HOH . E 5 HOH A 54 643 643 HOH HOH . E 5 HOH A 55 644 644 HOH HOH . E 5 HOH A 56 646 646 HOH HOH . E 5 HOH A 57 656 656 HOH HOH . E 5 HOH A 58 658 658 HOH HOH . E 5 HOH A 59 659 659 HOH HOH . F 5 HOH B 1 507 507 HOH HOH . F 5 HOH B 2 516 516 HOH HOH . F 5 HOH B 3 544 544 HOH HOH . F 5 HOH B 4 594 594 HOH HOH . F 5 HOH B 5 619 619 HOH HOH . G 5 HOH C 1 517 517 HOH HOH . G 5 HOH C 2 540 540 HOH HOH . G 5 HOH C 3 584 584 HOH HOH . G 5 HOH C 4 589 589 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 28.501 _atom_site.Cartn_y 28.716 _atom_site.Cartn_z 16.233 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 67.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 950 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #