data_3KN5
#
_model_server_result.job_id            VHscphw_25oOOsUOQHbe8w 
_model_server_result.datetime_utc      '2024-11-29 22:01:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kn5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    3KN5 
#
_exptl.entry_id    3KN5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KN5 
_cell.length_a            51.561 
_cell.length_b            91.25 
_cell.length_c            135.46 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KN5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 218 A CYS 631 1_555 A SG CYS 301 A CYS 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 B SG CYS 218 B CYS 631 1_555 B SG CYS 301 B CYS 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     3KN5 
_atom_sites.fract_transf_matrix[1][1]    0.019395 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010959 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007382 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ANP A 1 400 400 ANP ANP . 
D 2 ANP B 1 400 400 ANP ANP . 
E 3 HOH A 1 1 1 HOH HOH . 
E 3 HOH A 2 2 2 HOH HOH . 
E 3 HOH A 3 3 3 HOH HOH . 
E 3 HOH A 4 5 5 HOH HOH . 
E 3 HOH A 5 8 8 HOH HOH . 
E 3 HOH A 6 10 10 HOH HOH . 
E 3 HOH A 7 11 11 HOH HOH . 
E 3 HOH A 8 12 12 HOH HOH . 
E 3 HOH A 9 18 18 HOH HOH . 
E 3 HOH A 10 19 19 HOH HOH . 
E 3 HOH A 11 22 22 HOH HOH . 
E 3 HOH A 12 29 29 HOH HOH . 
E 3 HOH A 13 30 30 HOH HOH . 
E 3 HOH A 14 32 32 HOH HOH . 
E 3 HOH A 15 33 33 HOH HOH . 
E 3 HOH A 16 35 35 HOH HOH . 
E 3 HOH A 17 36 36 HOH HOH . 
E 3 HOH A 18 37 37 HOH HOH . 
E 3 HOH A 19 42 42 HOH HOH . 
E 3 HOH A 20 45 45 HOH HOH . 
E 3 HOH A 21 46 46 HOH HOH . 
E 3 HOH A 22 49 49 HOH HOH . 
E 3 HOH A 23 50 50 HOH HOH . 
E 3 HOH A 24 51 51 HOH HOH . 
E 3 HOH A 25 53 53 HOH HOH . 
E 3 HOH A 26 55 55 HOH HOH . 
E 3 HOH A 27 56 56 HOH HOH . 
E 3 HOH A 28 58 58 HOH HOH . 
E 3 HOH A 29 63 63 HOH HOH . 
E 3 HOH A 30 66 66 HOH HOH . 
E 3 HOH A 31 69 69 HOH HOH . 
E 3 HOH A 32 70 70 HOH HOH . 
E 3 HOH A 33 77 77 HOH HOH . 
E 3 HOH A 34 81 81 HOH HOH . 
E 3 HOH A 35 83 83 HOH HOH . 
F 3 HOH B 1 4 4 HOH HOH . 
F 3 HOH B 2 6 6 HOH HOH . 
F 3 HOH B 3 7 7 HOH HOH . 
F 3 HOH B 4 9 9 HOH HOH . 
F 3 HOH B 5 13 13 HOH HOH . 
F 3 HOH B 6 14 14 HOH HOH . 
F 3 HOH B 7 15 15 HOH HOH . 
F 3 HOH B 8 16 16 HOH HOH . 
F 3 HOH B 9 17 17 HOH HOH . 
F 3 HOH B 10 20 20 HOH HOH . 
F 3 HOH B 11 21 21 HOH HOH . 
F 3 HOH B 12 23 23 HOH HOH . 
F 3 HOH B 13 24 24 HOH HOH . 
F 3 HOH B 14 25 25 HOH HOH . 
F 3 HOH B 15 26 26 HOH HOH . 
F 3 HOH B 16 27 27 HOH HOH . 
F 3 HOH B 17 28 28 HOH HOH . 
F 3 HOH B 18 31 31 HOH HOH . 
F 3 HOH B 19 34 34 HOH HOH . 
F 3 HOH B 20 38 38 HOH HOH . 
F 3 HOH B 21 39 39 HOH HOH . 
F 3 HOH B 22 40 40 HOH HOH . 
F 3 HOH B 23 41 41 HOH HOH . 
F 3 HOH B 24 43 43 HOH HOH . 
F 3 HOH B 25 44 44 HOH HOH . 
F 3 HOH B 26 47 47 HOH HOH . 
F 3 HOH B 27 48 48 HOH HOH . 
F 3 HOH B 28 52 52 HOH HOH . 
F 3 HOH B 29 54 54 HOH HOH . 
F 3 HOH B 30 57 57 HOH HOH . 
F 3 HOH B 31 59 59 HOH HOH . 
F 3 HOH B 32 60 60 HOH HOH . 
F 3 HOH B 33 61 61 HOH HOH . 
F 3 HOH B 34 62 62 HOH HOH . 
F 3 HOH B 35 64 64 HOH HOH . 
F 3 HOH B 36 65 65 HOH HOH . 
F 3 HOH B 37 67 67 HOH HOH . 
F 3 HOH B 38 68 68 HOH HOH . 
F 3 HOH B 39 71 71 HOH HOH . 
F 3 HOH B 40 72 72 HOH HOH . 
F 3 HOH B 41 73 73 HOH HOH . 
F 3 HOH B 42 74 74 HOH HOH . 
F 3 HOH B 43 75 75 HOH HOH . 
F 3 HOH B 44 76 76 HOH HOH . 
F 3 HOH B 45 78 78 HOH HOH . 
F 3 HOH B 46 79 79 HOH HOH . 
F 3 HOH B 47 80 80 HOH HOH . 
F 3 HOH B 48 82 82 HOH HOH . 
F 3 HOH B 49 84 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . D 2 7.757 66.52 50.619 1 131.86 ? PG ANP 400 B 1 
HETATM 2 O O1G ANP . . . D 2 9.127 67.004 49.969 1 128.34 ? O1G ANP 400 B 1 
HETATM 3 O O2G ANP . . . D 2 6.716 67.92 51.002 1 114.56 ? O2G ANP 400 B 1 
HETATM 4 O O3G ANP . . . D 2 6.924 65.471 49.435 1 111.32 ? O3G ANP 400 B 1 
HETATM 5 P PB ANP . . . D 2 7.282 64.077 52.395 1 125.92 ? PB ANP 400 B 1 
HETATM 6 O O1B ANP . . . D 2 7.135 63.901 53.971 1 117.5 ? O1B ANP 400 B 1 
HETATM 7 O O2B ANP . . . D 2 5.65 64.121 51.676 1 109.79 ? O2B ANP 400 B 1 
HETATM 8 N N3B ANP . . . D 2 8.094 65.602 52.079 1 126.54 ? N3B ANP 400 B 1 
HETATM 9 P PA ANP . . . D 2 9.73 62.671 51.98 1 123.65 ? PA ANP 400 B 1 
HETATM 10 O O1A ANP . . . D 2 10.485 64.073 51.889 1 112.74 ? O1A ANP 400 B 1 
HETATM 11 O O2A ANP . . . D 2 10.118 61.844 53.519 1 104.58 ? O2A ANP 400 B 1 
HETATM 12 O O3A ANP . . . D 2 8.127 62.83 51.804 1 115.41 ? O3A ANP 400 B 1 
HETATM 13 O O5' ANP . . . D 2 10.145 61.726 50.734 1 100.61 ? O5' ANP 400 B 1 
HETATM 14 C C5' ANP . . . D 2 9.172 60.869 50.133 1 95.83 ? C5' ANP 400 B 1 
HETATM 15 C C4' ANP . . . D 2 9.087 59.581 50.944 1 96.8 ? C4' ANP 400 B 1 
HETATM 16 O O4' ANP . . . D 2 8.217 58.629 50.312 1 89.84 ? O4' ANP 400 B 1 
HETATM 17 C C3' ANP . . . D 2 10.446 58.911 51.119 1 91.21 ? C3' ANP 400 B 1 
HETATM 18 O O3' ANP . . . D 2 11.052 59.254 52.377 1 85.45 ? O3' ANP 400 B 1 
HETATM 19 C C2' ANP . . . D 2 10.137 57.429 51.065 1 85.57 ? C2' ANP 400 B 1 
HETATM 20 O O2' ANP . . . D 2 10.179 56.874 52.388 1 83.52 ? O2' ANP 400 B 1 
HETATM 21 C C1' ANP . . . D 2 8.742 57.3 50.457 1 83.84 ? C1' ANP 400 B 1 
HETATM 22 N N9 ANP . . . D 2 8.83 56.633 49.127 1 86.23 ? N9 ANP 400 B 1 
HETATM 23 C C8 ANP . . . D 2 8.884 57.268 47.933 1 88.45 ? C8 ANP 400 B 1 
HETATM 24 N N7 ANP . . . D 2 8.963 56.384 46.898 1 84.55 ? N7 ANP 400 B 1 
HETATM 25 C C5 ANP . . . D 2 8.957 55.147 47.433 1 77.21 ? C5 ANP 400 B 1 
HETATM 26 C C6 ANP . . . D 2 9.013 53.771 46.896 1 66.01 ? C6 ANP 400 B 1 
HETATM 27 N N6 ANP . . . D 2 9.099 53.566 45.558 1 65.09 ? N6 ANP 400 B 1 
HETATM 28 N N1 ANP . . . D 2 8.977 52.75 47.786 1 66.2 ? N1 ANP 400 B 1 
HETATM 29 C C2 ANP . . . D 2 8.895 52.967 49.118 1 70.6 ? C2 ANP 400 B 1 
HETATM 30 N N3 ANP . . . D 2 8.838 54.193 49.678 1 73.12 ? N3 ANP 400 B 1 
HETATM 31 C C4 ANP . . . D 2 8.865 55.308 48.9 1 81.59 ? C4 ANP 400 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#