data_3KNA # _model_server_result.job_id LBairNI6NdwXrB_IFWXdtg _model_server_result.datetime_utc '2025-02-18 04:55:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kna # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1055}' # _entry.id 3KNA # _exptl.entry_id 3KNA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KNA _cell.length_a 93.565 _cell.length_b 93.565 _cell.length_c 120.931 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KNA _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 238 A ASP 238 1_555 D MG MG . A MG 1055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? hydrog 'G-C PAIR' hydrog1 B N1 G 3 B G 905 1_555 C O2 C 5 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N1 G 4 B G 906 1_555 C N3 C 4 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N2 G 4 B G 906 1_555 C O2 C 4 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B O6 G 4 B G 906 1_555 C N4 C 4 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog5 B N1 G 4 B G 906 1_555 C O2 C 5 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 G 5 B G 907 1_555 C N3 C 3 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 G 5 B G 907 1_555 C O2 C 3 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 G 5 B G 907 1_555 C N4 C 3 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 C 6 B C 908 1_555 C N1 G 2 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N4 C 6 B C 908 1_555 C O6 G 2 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O2 C 6 B C 908 1_555 C N2 G 2 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog12 B N4 C 7 B C 909 1_555 C O6 G 1 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KNA _atom_sites.fract_transf_matrix[1][1] 0.010688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 1055 1055 MG MG . E 5 HOH A 1 477 2 HOH HOH . E 5 HOH A 2 478 4 HOH HOH . E 5 HOH A 3 479 5 HOH HOH . E 5 HOH A 4 480 7 HOH HOH . E 5 HOH A 5 481 8 HOH HOH . E 5 HOH A 6 482 9 HOH HOH . E 5 HOH A 7 483 10 HOH HOH . E 5 HOH A 8 484 11 HOH HOH . E 5 HOH A 9 485 12 HOH HOH . E 5 HOH A 10 486 13 HOH HOH . E 5 HOH A 11 487 14 HOH HOH . E 5 HOH A 12 488 16 HOH HOH . E 5 HOH A 13 489 17 HOH HOH . E 5 HOH A 14 490 18 HOH HOH . E 5 HOH A 15 491 20 HOH HOH . E 5 HOH A 16 492 22 HOH HOH . E 5 HOH A 17 493 25 HOH HOH . E 5 HOH A 18 494 26 HOH HOH . E 5 HOH A 19 495 27 HOH HOH . E 5 HOH A 20 496 28 HOH HOH . E 5 HOH A 21 497 29 HOH HOH . E 5 HOH A 22 498 31 HOH HOH . E 5 HOH A 23 499 32 HOH HOH . E 5 HOH A 24 500 34 HOH HOH . E 5 HOH A 25 501 35 HOH HOH . E 5 HOH A 26 502 37 HOH HOH . E 5 HOH A 27 503 38 HOH HOH . E 5 HOH A 28 504 39 HOH HOH . E 5 HOH A 29 505 40 HOH HOH . E 5 HOH A 30 506 43 HOH HOH . E 5 HOH A 31 507 44 HOH HOH . E 5 HOH A 32 508 45 HOH HOH . E 5 HOH A 33 509 48 HOH HOH . E 5 HOH A 34 510 49 HOH HOH . E 5 HOH A 35 511 24 HOH HOH . F 5 HOH B 1 1 1 HOH HOH . G 5 HOH C 1 36 36 HOH HOH . G 5 HOH C 2 50 50 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 18.393 _atom_site.Cartn_y 13.555 _atom_site.Cartn_z 32.107 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 74.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1055 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 969 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #