data_3KND # _model_server_result.job_id 59Az0SYV0VP0op_qnT3WFw _model_server_result.datetime_utc '2025-04-03 21:35:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3knd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":5}' # _entry.id 3KND # _exptl.entry_id 3KND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KND _cell.length_a 78.527 _cell.length_b 89.317 _cell.length_c 99.273 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KND _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 3KND _atom_sites.fract_transf_matrix[1][1] 0.012734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 1 1 SO4 SO4 . D 3 SO4 A 1 2 2 SO4 SO4 . E 3 SO4 A 1 3 3 SO4 SO4 . F 3 SO4 A 1 4 4 SO4 SO4 . G 3 SO4 A 1 5 5 SO4 SO4 . H 4 HOH A 1 6 6 HOH HOH . H 4 HOH A 2 7 7 HOH HOH . H 4 HOH A 3 8 8 HOH HOH . H 4 HOH A 4 9 9 HOH HOH . H 4 HOH A 5 10 10 HOH HOH . H 4 HOH A 6 11 11 HOH HOH . H 4 HOH A 7 12 12 HOH HOH . H 4 HOH A 8 13 13 HOH HOH . H 4 HOH A 9 14 14 HOH HOH . H 4 HOH A 10 15 15 HOH HOH . H 4 HOH A 11 16 16 HOH HOH . H 4 HOH A 12 17 17 HOH HOH . H 4 HOH A 13 18 18 HOH HOH . H 4 HOH A 14 19 19 HOH HOH . H 4 HOH A 15 20 20 HOH HOH . H 4 HOH A 16 21 21 HOH HOH . H 4 HOH A 17 22 22 HOH HOH . H 4 HOH A 18 23 23 HOH HOH . H 4 HOH A 19 24 24 HOH HOH . H 4 HOH A 20 25 25 HOH HOH . H 4 HOH A 21 26 26 HOH HOH . H 4 HOH A 22 27 27 HOH HOH . H 4 HOH A 23 28 28 HOH HOH . H 4 HOH A 24 29 29 HOH HOH . H 4 HOH A 25 30 30 HOH HOH . H 4 HOH A 26 31 31 HOH HOH . H 4 HOH A 27 32 32 HOH HOH . H 4 HOH A 28 33 33 HOH HOH . H 4 HOH A 29 34 34 HOH HOH . H 4 HOH A 30 35 35 HOH HOH . H 4 HOH A 31 36 36 HOH HOH . H 4 HOH A 32 37 37 HOH HOH . H 4 HOH A 33 38 38 HOH HOH . H 4 HOH A 34 39 39 HOH HOH . H 4 HOH A 35 40 40 HOH HOH . H 4 HOH A 36 41 41 HOH HOH . H 4 HOH A 37 42 42 HOH HOH . H 4 HOH A 38 43 43 HOH HOH . H 4 HOH A 39 44 44 HOH HOH . H 4 HOH A 40 45 45 HOH HOH . H 4 HOH A 41 46 46 HOH HOH . H 4 HOH A 42 47 47 HOH HOH . H 4 HOH A 43 48 48 HOH HOH . H 4 HOH A 44 49 49 HOH HOH . H 4 HOH A 45 50 50 HOH HOH . H 4 HOH A 46 51 51 HOH HOH . H 4 HOH A 47 52 52 HOH HOH . H 4 HOH A 48 53 53 HOH HOH . H 4 HOH A 49 54 54 HOH HOH . H 4 HOH A 50 55 55 HOH HOH . H 4 HOH A 51 56 56 HOH HOH . H 4 HOH A 52 57 57 HOH HOH . H 4 HOH A 53 58 58 HOH HOH . H 4 HOH A 54 59 59 HOH HOH . H 4 HOH A 55 60 60 HOH HOH . H 4 HOH A 56 61 61 HOH HOH . H 4 HOH A 57 62 62 HOH HOH . H 4 HOH A 58 63 63 HOH HOH . H 4 HOH A 59 64 64 HOH HOH . H 4 HOH A 60 65 65 HOH HOH . H 4 HOH A 61 66 66 HOH HOH . H 4 HOH A 62 67 67 HOH HOH . H 4 HOH A 63 68 68 HOH HOH . H 4 HOH A 64 69 69 HOH HOH . H 4 HOH A 65 530 1 HOH HOH . H 4 HOH A 66 531 2 HOH HOH . H 4 HOH A 67 532 3 HOH HOH . H 4 HOH A 68 533 4 HOH HOH . H 4 HOH A 69 534 5 HOH HOH . H 4 HOH A 70 535 70 HOH HOH . H 4 HOH A 71 536 71 HOH HOH . H 4 HOH A 72 537 72 HOH HOH . H 4 HOH A 73 538 73 HOH HOH . H 4 HOH A 74 539 74 HOH HOH . H 4 HOH A 75 540 75 HOH HOH . H 4 HOH A 76 541 76 HOH HOH . H 4 HOH A 77 542 77 HOH HOH . H 4 HOH A 78 543 78 HOH HOH . H 4 HOH A 79 544 79 HOH HOH . H 4 HOH A 80 545 80 HOH HOH . H 4 HOH A 81 546 81 HOH HOH . H 4 HOH A 82 547 82 HOH HOH . H 4 HOH A 83 548 83 HOH HOH . H 4 HOH A 84 549 84 HOH HOH . H 4 HOH A 85 550 85 HOH HOH . H 4 HOH A 86 551 86 HOH HOH . H 4 HOH A 87 552 87 HOH HOH . H 4 HOH A 88 553 88 HOH HOH . H 4 HOH A 89 554 89 HOH HOH . H 4 HOH A 90 555 90 HOH HOH . H 4 HOH A 91 556 91 HOH HOH . H 4 HOH A 92 557 92 HOH HOH . H 4 HOH A 93 558 93 HOH HOH . H 4 HOH A 94 559 94 HOH HOH . H 4 HOH A 95 560 95 HOH HOH . H 4 HOH A 96 561 96 HOH HOH . H 4 HOH A 97 562 97 HOH HOH . H 4 HOH A 98 563 98 HOH HOH . H 4 HOH A 99 564 99 HOH HOH . H 4 HOH A 100 565 100 HOH HOH . H 4 HOH A 101 566 101 HOH HOH . H 4 HOH A 102 567 102 HOH HOH . H 4 HOH A 103 568 103 HOH HOH . H 4 HOH A 104 569 104 HOH HOH . H 4 HOH A 105 570 105 HOH HOH . H 4 HOH A 106 571 106 HOH HOH . H 4 HOH A 107 572 107 HOH HOH . H 4 HOH A 108 573 108 HOH HOH . H 4 HOH A 109 574 109 HOH HOH . H 4 HOH A 110 575 110 HOH HOH . H 4 HOH A 111 576 111 HOH HOH . H 4 HOH A 112 577 112 HOH HOH . H 4 HOH A 113 578 113 HOH HOH . H 4 HOH A 114 579 114 HOH HOH . H 4 HOH A 115 580 115 HOH HOH . H 4 HOH A 116 581 116 HOH HOH . H 4 HOH A 117 582 117 HOH HOH . H 4 HOH A 118 583 118 HOH HOH . H 4 HOH A 119 584 119 HOH HOH . H 4 HOH A 120 585 120 HOH HOH . H 4 HOH A 121 586 121 HOH HOH . H 4 HOH A 122 587 122 HOH HOH . H 4 HOH A 123 588 123 HOH HOH . H 4 HOH A 124 589 124 HOH HOH . H 4 HOH A 125 590 125 HOH HOH . H 4 HOH A 126 591 126 HOH HOH . H 4 HOH A 127 592 127 HOH HOH . H 4 HOH A 128 593 128 HOH HOH . H 4 HOH A 129 594 129 HOH HOH . H 4 HOH A 130 595 130 HOH HOH . H 4 HOH A 131 596 131 HOH HOH . H 4 HOH A 132 597 132 HOH HOH . H 4 HOH A 133 598 133 HOH HOH . H 4 HOH A 134 599 134 HOH HOH . H 4 HOH A 135 600 135 HOH HOH . H 4 HOH A 136 601 136 HOH HOH . H 4 HOH A 137 602 137 HOH HOH . H 4 HOH A 138 603 138 HOH HOH . H 4 HOH A 139 604 139 HOH HOH . H 4 HOH A 140 605 140 HOH HOH . H 4 HOH A 141 606 141 HOH HOH . H 4 HOH A 142 607 142 HOH HOH . H 4 HOH A 143 608 143 HOH HOH . H 4 HOH A 144 609 144 HOH HOH . H 4 HOH A 145 610 145 HOH HOH . H 4 HOH A 146 611 146 HOH HOH . H 4 HOH A 147 612 147 HOH HOH . H 4 HOH A 148 613 148 HOH HOH . H 4 HOH A 149 614 149 HOH HOH . H 4 HOH A 150 615 150 HOH HOH . H 4 HOH A 151 616 151 HOH HOH . H 4 HOH A 152 617 152 HOH HOH . H 4 HOH A 153 618 153 HOH HOH . H 4 HOH A 154 619 154 HOH HOH . H 4 HOH A 155 620 155 HOH HOH . H 4 HOH A 156 621 156 HOH HOH . H 4 HOH A 157 622 157 HOH HOH . H 4 HOH A 158 623 158 HOH HOH . H 4 HOH A 159 624 159 HOH HOH . H 4 HOH A 160 625 160 HOH HOH . H 4 HOH A 161 626 161 HOH HOH . H 4 HOH A 162 627 162 HOH HOH . H 4 HOH A 163 628 163 HOH HOH . H 4 HOH A 164 629 164 HOH HOH . H 4 HOH A 165 630 165 HOH HOH . H 4 HOH A 166 631 166 HOH HOH . H 4 HOH A 167 632 169 HOH HOH . H 4 HOH A 168 633 170 HOH HOH . H 4 HOH A 169 634 171 HOH HOH . H 4 HOH A 170 635 172 HOH HOH . H 4 HOH A 171 636 173 HOH HOH . H 4 HOH A 172 637 174 HOH HOH . H 4 HOH A 173 638 175 HOH HOH . H 4 HOH A 174 639 176 HOH HOH . H 4 HOH A 175 640 177 HOH HOH . H 4 HOH A 176 641 178 HOH HOH . H 4 HOH A 177 642 179 HOH HOH . H 4 HOH A 178 643 180 HOH HOH . H 4 HOH A 179 644 181 HOH HOH . H 4 HOH A 180 645 182 HOH HOH . H 4 HOH A 181 646 183 HOH HOH . H 4 HOH A 182 647 184 HOH HOH . H 4 HOH A 183 648 185 HOH HOH . H 4 HOH A 184 649 186 HOH HOH . H 4 HOH A 185 650 187 HOH HOH . H 4 HOH A 186 651 188 HOH HOH . H 4 HOH A 187 652 189 HOH HOH . H 4 HOH A 188 653 192 HOH HOH . H 4 HOH A 189 654 193 HOH HOH . H 4 HOH A 190 655 195 HOH HOH . H 4 HOH A 191 656 196 HOH HOH . H 4 HOH A 192 657 197 HOH HOH . H 4 HOH A 193 658 198 HOH HOH . H 4 HOH A 194 659 199 HOH HOH . H 4 HOH A 195 660 200 HOH HOH . H 4 HOH A 196 661 201 HOH HOH . H 4 HOH A 197 662 202 HOH HOH . H 4 HOH A 198 663 203 HOH HOH . H 4 HOH A 199 664 204 HOH HOH . H 4 HOH A 200 665 205 HOH HOH . H 4 HOH A 201 666 206 HOH HOH . H 4 HOH A 202 667 207 HOH HOH . H 4 HOH A 203 668 208 HOH HOH . H 4 HOH A 204 669 209 HOH HOH . H 4 HOH A 205 670 210 HOH HOH . H 4 HOH A 206 671 212 HOH HOH . H 4 HOH A 207 672 213 HOH HOH . H 4 HOH A 208 673 214 HOH HOH . H 4 HOH A 209 674 215 HOH HOH . H 4 HOH A 210 675 216 HOH HOH . H 4 HOH A 211 676 217 HOH HOH . H 4 HOH A 212 677 218 HOH HOH . H 4 HOH A 213 678 219 HOH HOH . H 4 HOH A 214 679 220 HOH HOH . H 4 HOH A 215 680 221 HOH HOH . H 4 HOH A 216 681 222 HOH HOH . H 4 HOH A 217 682 223 HOH HOH . H 4 HOH A 218 683 224 HOH HOH . H 4 HOH A 219 684 225 HOH HOH . H 4 HOH A 220 685 226 HOH HOH . H 4 HOH A 221 686 228 HOH HOH . H 4 HOH A 222 687 229 HOH HOH . H 4 HOH A 223 688 230 HOH HOH . H 4 HOH A 224 689 231 HOH HOH . H 4 HOH A 225 690 232 HOH HOH . H 4 HOH A 226 691 233 HOH HOH . H 4 HOH A 227 692 234 HOH HOH . H 4 HOH A 228 693 236 HOH HOH . I 4 HOH B 1 167 167 HOH HOH . I 4 HOH B 2 168 168 HOH HOH . I 4 HOH B 3 190 190 HOH HOH . I 4 HOH B 4 191 191 HOH HOH . I 4 HOH B 5 194 194 HOH HOH . I 4 HOH B 6 211 211 HOH HOH . I 4 HOH B 7 227 227 HOH HOH . I 4 HOH B 8 235 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . G 3 35.096 34.625 34.992 1 130.13 ? S SO4 5 A 1 HETATM 2 O O1 SO4 . . . G 3 35.91 33.541 34.448 1 131.75 ? O1 SO4 5 A 1 HETATM 3 O O2 SO4 . . . G 3 34.944 34.449 36.435 1 129.54 ? O2 SO4 5 A 1 HETATM 4 O O3 SO4 . . . G 3 33.78 34.592 34.363 1 129.83 ? O3 SO4 5 A 1 HETATM 5 O O4 SO4 . . . G 3 35.748 35.901 34.706 1 128.51 ? O4 SO4 5 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #