data_3KNX
#
_model_server_result.job_id            G97y-s33mApkAu0gkSKFZw 
_model_server_result.datetime_utc      '2025-01-10 09:26:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3knx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":998}' 
#
_entry.id    3KNX 
#
_exptl.entry_id    3KNX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BETA-MERCAPTOETHANOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3KNX 
_cell.length_a            223.587 
_cell.length_b            223.587 
_cell.length_c            75.282 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KNX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,I,J 1 1 
C,D,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 150 A SER 139 1_555 F C46 JZT . A JZT 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? 
metalc ? metalc1 A SG CYS 110 A CYS 99 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 A SG CYS 156 A CYS 145 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc3 C SG CYS 108 C CYS 97 1_555 H ZN ZN . C ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc4 C SG CYS 110 C CYS 99 1_555 H ZN ZN . C ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc5 C SG CYS 156 C CYS 145 1_555 H ZN ZN . C ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                BME 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BETA-MERCAPTOETHANOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BME sing 70 n n 
C1 O1 BME sing 71 n n 
C1 H11 BME sing 72 n n 
C1 H12 BME sing 73 n n 
C2 S2 BME sing 74 n n 
C2 H21 BME sing 75 n n 
C2 H22 BME sing 76 n n 
O1 HO1 BME sing 77 n n 
S2 HS2 BME sing 78 n n 
#
_atom_sites.entry_id                     3KNX 
_atom_sites.fract_transf_matrix[1][1]    0.004473 
_atom_sites.fract_transf_matrix[1][2]    0.002582 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005164 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013283 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 901 901 ZN ZN . 
F 4 JZT A 1 999 999 JZT JZT . 
G 5 BME A 1 998 998 BME BME . 
H 3 ZN C 1 902 902 ZN ZN . 
I 6 HOH A 1 190 2 HOH HOH . 
I 6 HOH A 2 191 7 HOH HOH . 
I 6 HOH A 3 192 8 HOH HOH . 
I 6 HOH A 4 193 9 HOH HOH . 
I 6 HOH A 5 194 10 HOH HOH . 
I 6 HOH A 6 195 11 HOH HOH . 
I 6 HOH A 7 196 13 HOH HOH . 
I 6 HOH A 8 197 15 HOH HOH . 
I 6 HOH A 9 198 16 HOH HOH . 
I 6 HOH A 10 199 17 HOH HOH . 
I 6 HOH A 11 200 22 HOH HOH . 
I 6 HOH A 12 201 23 HOH HOH . 
I 6 HOH A 13 202 28 HOH HOH . 
I 6 HOH A 14 203 32 HOH HOH . 
I 6 HOH A 15 204 35 HOH HOH . 
I 6 HOH A 16 205 36 HOH HOH . 
I 6 HOH A 17 206 39 HOH HOH . 
I 6 HOH A 18 207 40 HOH HOH . 
I 6 HOH A 19 208 41 HOH HOH . 
I 6 HOH A 20 209 43 HOH HOH . 
I 6 HOH A 21 210 44 HOH HOH . 
I 6 HOH A 22 211 48 HOH HOH . 
I 6 HOH A 23 212 49 HOH HOH . 
I 6 HOH A 24 213 51 HOH HOH . 
I 6 HOH A 25 214 52 HOH HOH . 
I 6 HOH A 26 215 53 HOH HOH . 
I 6 HOH A 27 216 55 HOH HOH . 
I 6 HOH A 28 217 58 HOH HOH . 
I 6 HOH A 29 218 59 HOH HOH . 
I 6 HOH A 30 219 60 HOH HOH . 
I 6 HOH A 31 220 62 HOH HOH . 
I 6 HOH A 32 221 63 HOH HOH . 
I 6 HOH A 33 222 65 HOH HOH . 
I 6 HOH A 34 223 70 HOH HOH . 
I 6 HOH A 35 224 71 HOH HOH . 
I 6 HOH A 36 225 75 HOH HOH . 
I 6 HOH A 37 226 76 HOH HOH . 
I 6 HOH A 38 227 77 HOH HOH . 
I 6 HOH A 39 228 79 HOH HOH . 
I 6 HOH A 40 229 80 HOH HOH . 
I 6 HOH A 41 230 83 HOH HOH . 
I 6 HOH A 42 231 89 HOH HOH . 
I 6 HOH A 43 232 90 HOH HOH . 
I 6 HOH A 44 233 91 HOH HOH . 
I 6 HOH A 45 234 93 HOH HOH . 
I 6 HOH A 46 235 94 HOH HOH . 
I 6 HOH A 47 236 96 HOH HOH . 
I 6 HOH A 48 237 99 HOH HOH . 
I 6 HOH A 49 238 104 HOH HOH . 
I 6 HOH A 50 239 105 HOH HOH . 
I 6 HOH A 51 240 106 HOH HOH . 
I 6 HOH A 52 241 109 HOH HOH . 
I 6 HOH A 53 242 113 HOH HOH . 
I 6 HOH A 54 243 114 HOH HOH . 
I 6 HOH A 55 244 115 HOH HOH . 
I 6 HOH A 56 245 116 HOH HOH . 
I 6 HOH A 57 246 117 HOH HOH . 
I 6 HOH A 58 247 120 HOH HOH . 
I 6 HOH A 59 248 121 HOH HOH . 
I 6 HOH A 60 249 123 HOH HOH . 
I 6 HOH A 61 250 124 HOH HOH . 
I 6 HOH A 62 251 125 HOH HOH . 
I 6 HOH A 63 252 126 HOH HOH . 
I 6 HOH A 64 253 127 HOH HOH . 
I 6 HOH A 65 254 128 HOH HOH . 
I 6 HOH A 66 255 129 HOH HOH . 
I 6 HOH A 67 256 130 HOH HOH . 
I 6 HOH A 68 257 131 HOH HOH . 
I 6 HOH A 69 258 134 HOH HOH . 
I 6 HOH A 70 259 136 HOH HOH . 
I 6 HOH A 71 260 137 HOH HOH . 
I 6 HOH A 72 261 139 HOH HOH . 
I 6 HOH A 73 262 143 HOH HOH . 
I 6 HOH A 74 263 147 HOH HOH . 
I 6 HOH A 75 264 148 HOH HOH . 
I 6 HOH A 76 265 155 HOH HOH . 
I 6 HOH A 77 266 160 HOH HOH . 
I 6 HOH A 78 267 164 HOH HOH . 
J 6 HOH B 1 1 1 HOH HOH . 
J 6 HOH B 2 42 20 HOH HOH . 
J 6 HOH B 3 72 72 HOH HOH . 
J 6 HOH B 4 84 84 HOH HOH . 
J 6 HOH B 5 140 140 HOH HOH . 
J 6 HOH B 6 145 145 HOH HOH . 
J 6 HOH B 7 146 146 HOH HOH . 
J 6 HOH B 8 154 154 HOH HOH . 
K 6 HOH C 1 190 3 HOH HOH . 
K 6 HOH C 2 191 4 HOH HOH . 
K 6 HOH C 3 192 5 HOH HOH . 
K 6 HOH C 4 193 12 HOH HOH . 
K 6 HOH C 5 194 14 HOH HOH . 
K 6 HOH C 6 195 18 HOH HOH . 
K 6 HOH C 7 196 19 HOH HOH . 
K 6 HOH C 8 197 21 HOH HOH . 
K 6 HOH C 9 198 25 HOH HOH . 
K 6 HOH C 10 199 26 HOH HOH . 
K 6 HOH C 11 200 27 HOH HOH . 
K 6 HOH C 12 201 29 HOH HOH . 
K 6 HOH C 13 202 31 HOH HOH . 
K 6 HOH C 14 203 34 HOH HOH . 
K 6 HOH C 15 204 37 HOH HOH . 
K 6 HOH C 16 205 38 HOH HOH . 
K 6 HOH C 17 206 42 HOH HOH . 
K 6 HOH C 18 207 45 HOH HOH . 
K 6 HOH C 19 208 46 HOH HOH . 
K 6 HOH C 20 209 50 HOH HOH . 
K 6 HOH C 21 210 54 HOH HOH . 
K 6 HOH C 22 211 56 HOH HOH . 
K 6 HOH C 23 212 57 HOH HOH . 
K 6 HOH C 24 213 61 HOH HOH . 
K 6 HOH C 25 214 64 HOH HOH . 
K 6 HOH C 26 215 66 HOH HOH . 
K 6 HOH C 27 216 67 HOH HOH . 
K 6 HOH C 28 217 68 HOH HOH . 
K 6 HOH C 29 218 69 HOH HOH . 
K 6 HOH C 30 219 73 HOH HOH . 
K 6 HOH C 31 220 74 HOH HOH . 
K 6 HOH C 32 221 78 HOH HOH . 
K 6 HOH C 33 222 81 HOH HOH . 
K 6 HOH C 34 223 82 HOH HOH . 
K 6 HOH C 35 224 85 HOH HOH . 
K 6 HOH C 36 225 87 HOH HOH . 
K 6 HOH C 37 226 88 HOH HOH . 
K 6 HOH C 38 227 92 HOH HOH . 
K 6 HOH C 39 228 97 HOH HOH . 
K 6 HOH C 40 229 98 HOH HOH . 
K 6 HOH C 41 230 101 HOH HOH . 
K 6 HOH C 42 231 102 HOH HOH . 
K 6 HOH C 43 232 103 HOH HOH . 
K 6 HOH C 44 233 107 HOH HOH . 
K 6 HOH C 45 234 108 HOH HOH . 
K 6 HOH C 46 235 110 HOH HOH . 
K 6 HOH C 47 236 111 HOH HOH . 
K 6 HOH C 48 237 112 HOH HOH . 
K 6 HOH C 49 238 118 HOH HOH . 
K 6 HOH C 50 239 119 HOH HOH . 
K 6 HOH C 51 240 122 HOH HOH . 
K 6 HOH C 52 241 132 HOH HOH . 
K 6 HOH C 53 242 133 HOH HOH . 
K 6 HOH C 54 243 138 HOH HOH . 
K 6 HOH C 55 244 141 HOH HOH . 
K 6 HOH C 56 245 142 HOH HOH . 
K 6 HOH C 57 246 144 HOH HOH . 
K 6 HOH C 58 247 149 HOH HOH . 
K 6 HOH C 59 248 150 HOH HOH . 
K 6 HOH C 60 249 152 HOH HOH . 
K 6 HOH C 61 250 153 HOH HOH . 
K 6 HOH C 62 251 156 HOH HOH . 
K 6 HOH C 63 252 158 HOH HOH . 
K 6 HOH C 64 253 159 HOH HOH . 
K 6 HOH C 65 254 161 HOH HOH . 
K 6 HOH C 66 255 162 HOH HOH . 
K 6 HOH C 67 256 163 HOH HOH . 
L 6 HOH D 1 6 6 HOH HOH . 
L 6 HOH D 2 42 24 HOH HOH . 
L 6 HOH D 3 43 30 HOH HOH . 
L 6 HOH D 4 44 33 HOH HOH . 
L 6 HOH D 5 47 47 HOH HOH . 
L 6 HOH D 6 86 86 HOH HOH . 
L 6 HOH D 7 95 95 HOH HOH . 
L 6 HOH D 8 100 100 HOH HOH . 
L 6 HOH D 9 135 135 HOH HOH . 
L 6 HOH D 10 151 151 HOH HOH . 
L 6 HOH D 11 157 157 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BME . . . G 5 212.679 -2.359 52.965 1 68.18 ? C1 BME 998 A 1 
HETATM 2 C C2 BME . . . G 5 212.96 -0.988 53.54 1 65.07 ? C2 BME 998 A 1 
HETATM 3 O O1 BME . . . G 5 213.727 -3.219 53.413 1 70.49 ? O1 BME 998 A 1 
HETATM 4 S S2 BME . . . G 5 213.185 -1.042 55.35 1 61.57 ? S2 BME 998 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#