data_3KO3
#
_model_server_result.job_id            PjD7lzYkvDBbfGjmisb3xQ 
_model_server_result.datetime_utc      '2024-11-23 22:40:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ko3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":165}' 
#
_entry.id    3KO3 
#
_exptl.entry_id    3KO3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         72.52 
_cell.angle_beta          77.85 
_cell.angle_gamma         88.92 
_cell.entry_id            3KO3 
_cell.length_a            51.786 
_cell.length_b            53.241 
_cell.length_c            91.793 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KO3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,H,I 1 1 
C,D,G,J,K 2 1 
E,F,L,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3KO3 
_atom_sites.fract_transf_matrix[1][1]    0.01931 
_atom_sites.fract_transf_matrix[1][2]    -0.000365 
_atom_sites.fract_transf_matrix[1][3]    -0.004246 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018786 
_atom_sites.fract_transf_matrix[2][3]    -0.005979 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011694 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ADP C 1 165 1 ADP ADP . 
H 3 HOH A 1 165 2 HOH HOH . 
H 3 HOH A 2 166 7 HOH HOH . 
H 3 HOH A 3 167 13 HOH HOH . 
H 3 HOH A 4 168 15 HOH HOH . 
H 3 HOH A 5 169 19 HOH HOH . 
H 3 HOH A 6 170 20 HOH HOH . 
H 3 HOH A 7 172 35 HOH HOH . 
H 3 HOH A 8 173 43 HOH HOH . 
H 3 HOH A 9 174 44 HOH HOH . 
H 3 HOH A 10 175 47 HOH HOH . 
H 3 HOH A 11 176 58 HOH HOH . 
H 3 HOH A 12 177 59 HOH HOH . 
H 3 HOH A 13 178 61 HOH HOH . 
H 3 HOH A 14 179 65 HOH HOH . 
H 3 HOH A 15 180 67 HOH HOH . 
H 3 HOH A 16 181 68 HOH HOH . 
H 3 HOH A 17 182 73 HOH HOH . 
H 3 HOH A 18 183 74 HOH HOH . 
H 3 HOH A 19 184 75 HOH HOH . 
I 3 HOH B 1 165 1 HOH HOH . 
I 3 HOH B 2 166 6 HOH HOH . 
I 3 HOH B 3 167 12 HOH HOH . 
I 3 HOH B 4 168 33 HOH HOH . 
I 3 HOH B 5 169 36 HOH HOH . 
I 3 HOH B 6 171 38 HOH HOH . 
I 3 HOH B 7 172 40 HOH HOH . 
I 3 HOH B 8 173 49 HOH HOH . 
I 3 HOH B 9 174 50 HOH HOH . 
I 3 HOH B 10 175 51 HOH HOH . 
I 3 HOH B 11 176 52 HOH HOH . 
I 3 HOH B 12 177 53 HOH HOH . 
I 3 HOH B 13 178 57 HOH HOH . 
J 3 HOH C 1 166 9 HOH HOH . 
J 3 HOH C 2 167 16 HOH HOH . 
J 3 HOH C 3 168 26 HOH HOH . 
J 3 HOH C 4 169 27 HOH HOH . 
J 3 HOH C 5 170 31 HOH HOH . 
J 3 HOH C 6 171 32 HOH HOH . 
J 3 HOH C 7 172 39 HOH HOH . 
J 3 HOH C 8 173 45 HOH HOH . 
J 3 HOH C 9 174 62 HOH HOH . 
J 3 HOH C 10 175 71 HOH HOH . 
J 3 HOH C 11 176 78 HOH HOH . 
K 3 HOH D 1 165 3 HOH HOH . 
K 3 HOH D 2 166 8 HOH HOH . 
K 3 HOH D 3 167 11 HOH HOH . 
K 3 HOH D 4 168 17 HOH HOH . 
K 3 HOH D 5 169 25 HOH HOH . 
K 3 HOH D 6 170 37 HOH HOH . 
K 3 HOH D 7 171 34 HOH HOH . 
K 3 HOH D 8 172 41 HOH HOH . 
K 3 HOH D 9 173 46 HOH HOH . 
K 3 HOH D 10 174 48 HOH HOH . 
K 3 HOH D 11 175 54 HOH HOH . 
K 3 HOH D 12 176 55 HOH HOH . 
K 3 HOH D 13 177 63 HOH HOH . 
K 3 HOH D 14 178 72 HOH HOH . 
K 3 HOH D 15 179 79 HOH HOH . 
K 3 HOH D 16 180 30 HOH HOH . 
L 3 HOH E 1 165 5 HOH HOH . 
L 3 HOH E 2 166 10 HOH HOH . 
L 3 HOH E 3 167 14 HOH HOH . 
L 3 HOH E 4 168 18 HOH HOH . 
L 3 HOH E 5 169 24 HOH HOH . 
L 3 HOH E 6 170 28 HOH HOH . 
L 3 HOH E 7 171 66 HOH HOH . 
L 3 HOH E 8 172 69 HOH HOH . 
M 3 HOH F 1 165 4 HOH HOH . 
M 3 HOH F 2 166 21 HOH HOH . 
M 3 HOH F 3 167 22 HOH HOH . 
M 3 HOH F 4 168 23 HOH HOH . 
M 3 HOH F 5 169 42 HOH HOH . 
M 3 HOH F 6 170 56 HOH HOH . 
M 3 HOH F 7 171 29 HOH HOH . 
M 3 HOH F 8 172 64 HOH HOH . 
M 3 HOH F 9 173 70 HOH HOH . 
M 3 HOH F 10 174 76 HOH HOH . 
M 3 HOH F 11 175 77 HOH HOH . 
M 3 HOH F 12 176 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . G 2 -24.332 -43.432 -50.16 1 74.46 ? PB ADP 165 C 1 
HETATM 2 O O1B ADP . . . G 2 -23.877 -43.936 -48.805 1 73.32 ? O1B ADP 165 C 1 
HETATM 3 O O2B ADP . . . G 2 -25.646 -42.686 -50.314 1 73.54 ? O2B ADP 165 C 1 
HETATM 4 O O3B ADP . . . G 2 -24.47 -44.773 -51.056 1 74.51 ? O3B ADP 165 C 1 
HETATM 5 P PA ADP . . . G 2 -21.884 -41.706 -50.364 1 70.95 ? PA ADP 165 C 1 
HETATM 6 O O1A ADP . . . G 2 -20.811 -41.659 -51.43 1 71.02 ? O1A ADP 165 C 1 
HETATM 7 O O2A ADP . . . G 2 -22.355 -40.382 -49.778 1 69.91 ? O2A ADP 165 C 1 
HETATM 8 O O3A ADP . . . G 2 -23.163 -42.57 -50.933 1 72.65 ? O3A ADP 165 C 1 
HETATM 9 O O5' ADP . . . G 2 -21.217 -42.637 -49.233 1 66.75 ? O5' ADP 165 C 1 
HETATM 10 C C5' ADP . . . G 2 -20.156 -42.122 -48.438 1 60.73 ? C5' ADP 165 C 1 
HETATM 11 C C4' ADP . . . G 2 -20.648 -41.916 -47.009 1 56.13 ? C4' ADP 165 C 1 
HETATM 12 O O4' ADP . . . G 2 -20.048 -40.743 -46.474 1 53.67 ? O4' ADP 165 C 1 
HETATM 13 C C3' ADP . . . G 2 -22.148 -41.696 -46.857 1 54.61 ? C3' ADP 165 C 1 
HETATM 14 O O3' ADP . . . G 2 -22.828 -42.933 -46.655 1 54.78 ? O3' ADP 165 C 1 
HETATM 15 C C2' ADP . . . G 2 -22.269 -40.843 -45.624 1 53.54 ? C2' ADP 165 C 1 
HETATM 16 O O2' ADP . . . G 2 -22.332 -41.702 -44.478 1 53.72 ? O2' ADP 165 C 1 
HETATM 17 C C1' ADP . . . G 2 -20.947 -40.099 -45.568 1 50.6 ? C1' ADP 165 C 1 
HETATM 18 N N9 ADP . . . G 2 -21.061 -38.666 -45.93 1 48.9 ? N9 ADP 165 C 1 
HETATM 19 C C8 ADP . . . G 2 -22.011 -38.08 -46.675 1 48.36 ? C8 ADP 165 C 1 
HETATM 20 N N7 ADP . . . G 2 -21.774 -36.748 -46.789 1 47.95 ? N7 ADP 165 C 1 
HETATM 21 C C5 ADP . . . G 2 -20.652 -36.475 -46.106 1 47.95 ? C5 ADP 165 C 1 
HETATM 22 C C6 ADP . . . G 2 -19.839 -35.274 -45.805 1 48.37 ? C6 ADP 165 C 1 
HETATM 23 N N6 ADP . . . G 2 -20.205 -34.067 -46.288 1 48.7 ? N6 ADP 165 C 1 
HETATM 24 N N1 ADP . . . G 2 -18.728 -35.421 -45.04 1 48.22 ? N1 ADP 165 C 1 
HETATM 25 C C2 ADP . . . G 2 -18.352 -36.618 -44.552 1 48.05 ? C2 ADP 165 C 1 
HETATM 26 N N3 ADP . . . G 2 -19.046 -37.748 -44.78 1 48.38 ? N3 ADP 165 C 1 
HETATM 27 C C4 ADP . . . G 2 -20.181 -37.743 -45.541 1 48.43 ? C4 ADP 165 C 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#