data_3KO7 # _model_server_result.job_id XEyJSHl0QISAn9N3xtIIlQ _model_server_result.datetime_utc '2024-11-28 09:15:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ko7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":165}' # _entry.id 3KO7 # _exptl.entry_id 3KO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.188 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-LYSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 74.8 _cell.angle_beta 75.45 _cell.angle_gamma 86.07 _cell.entry_id 3KO7 _cell.length_a 51.905 _cell.length_b 53.238 _cell.length_c 91.092 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,H,I 1 1 C,D,G,J,K 2 1 E,F,L,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 N2 O2' _chem_comp.formula_weight 146.188 _chem_comp.id DLY _chem_comp.mon_nstd_flag . _chem_comp.name D-LYSINE _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DLY sing 83 n n N H DLY sing 84 n n N H2 DLY sing 85 n n CA C DLY sing 86 n n CA CB DLY sing 87 n n CA HA DLY sing 88 n n C O DLY doub 89 n n C OXT DLY sing 90 n n CB CG DLY sing 91 n n CB HB2 DLY sing 92 n n CB HB3 DLY sing 93 n n CG CD DLY sing 94 n n CG HG2 DLY sing 95 n n CG HG3 DLY sing 96 n n CD CE DLY sing 97 n n CD HD2 DLY sing 98 n n CD HD3 DLY sing 99 n n CE NZ DLY sing 100 n n CE HE2 DLY sing 101 n n CE HE3 DLY sing 102 n n NZ HZ1 DLY sing 103 n n NZ HZ2 DLY sing 104 n n OXT HXT DLY sing 105 n n # _atom_sites.entry_id 3KO7 _atom_sites.fract_transf_matrix[1][1] 0.019266 _atom_sites.fract_transf_matrix[1][2] -0.001324 _atom_sites.fract_transf_matrix[1][3] -0.004822 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018828 _atom_sites.fract_transf_matrix[2][3] -0.004936 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 DLY C 1 165 1 DLY DLY . H 3 HOH A 1 165 5 HOH HOH . H 3 HOH A 2 166 12 HOH HOH . H 3 HOH A 3 167 18 HOH HOH . H 3 HOH A 4 168 21 HOH HOH . H 3 HOH A 5 169 24 HOH HOH . H 3 HOH A 6 170 27 HOH HOH . H 3 HOH A 7 171 28 HOH HOH . H 3 HOH A 8 172 36 HOH HOH . H 3 HOH A 9 173 40 HOH HOH . H 3 HOH A 10 174 46 HOH HOH . H 3 HOH A 11 175 47 HOH HOH . H 3 HOH A 12 176 48 HOH HOH . H 3 HOH A 13 177 51 HOH HOH . H 3 HOH A 14 178 53 HOH HOH . H 3 HOH A 15 179 57 HOH HOH . H 3 HOH A 16 180 17 HOH HOH . I 3 HOH B 1 165 1 HOH HOH . I 3 HOH B 2 166 2 HOH HOH . I 3 HOH B 3 167 3 HOH HOH . I 3 HOH B 4 168 4 HOH HOH . I 3 HOH B 5 169 8 HOH HOH . I 3 HOH B 6 170 9 HOH HOH . I 3 HOH B 7 171 10 HOH HOH . I 3 HOH B 8 172 13 HOH HOH . I 3 HOH B 9 173 20 HOH HOH . I 3 HOH B 10 174 26 HOH HOH . I 3 HOH B 11 175 34 HOH HOH . I 3 HOH B 12 176 35 HOH HOH . I 3 HOH B 13 177 38 HOH HOH . I 3 HOH B 14 178 39 HOH HOH . I 3 HOH B 15 179 49 HOH HOH . I 3 HOH B 16 180 52 HOH HOH . I 3 HOH B 17 181 55 HOH HOH . J 3 HOH C 1 166 11 HOH HOH . J 3 HOH C 2 167 29 HOH HOH . J 3 HOH C 3 168 30 HOH HOH . J 3 HOH C 4 169 33 HOH HOH . J 3 HOH C 5 170 37 HOH HOH . J 3 HOH C 6 171 44 HOH HOH . J 3 HOH C 7 172 45 HOH HOH . J 3 HOH C 8 173 58 HOH HOH . K 3 HOH D 1 165 7 HOH HOH . K 3 HOH D 2 166 14 HOH HOH . K 3 HOH D 3 167 22 HOH HOH . K 3 HOH D 4 168 25 HOH HOH . K 3 HOH D 5 169 32 HOH HOH . K 3 HOH D 6 170 50 HOH HOH . L 3 HOH E 1 166 41 HOH HOH . L 3 HOH E 2 167 42 HOH HOH . L 3 HOH E 3 168 54 HOH HOH . M 3 HOH F 1 165 6 HOH HOH . M 3 HOH F 2 166 15 HOH HOH . M 3 HOH F 3 167 16 HOH HOH . M 3 HOH F 4 168 19 HOH HOH . M 3 HOH F 5 169 23 HOH HOH . M 3 HOH F 6 170 31 HOH HOH . M 3 HOH F 7 171 43 HOH HOH . M 3 HOH F 8 172 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DLY . . . G 2 46.863 22.087 25.407 1 74.29 ? N DLY 165 C 1 HETATM 2 C CA DLY . . . G 2 47.454 23.191 24.59 1 74.55 ? CA DLY 165 C 1 HETATM 3 C C DLY . . . G 2 48.304 22.703 23.437 1 74.92 ? C DLY 165 C 1 HETATM 4 O O DLY . . . G 2 48.07 21.635 22.856 1 75.01 ? O DLY 165 C 1 HETATM 5 C CB DLY . . . G 2 46.351 24.103 24.069 1 74.35 ? CB DLY 165 C 1 HETATM 6 C CG DLY . . . G 2 46.725 25.567 24.26 1 73.97 ? CG DLY 165 C 1 HETATM 7 C CD DLY . . . G 2 46.072 26.42 23.182 1 73.21 ? CD DLY 165 C 1 HETATM 8 C CE DLY . . . G 2 47.114 26.962 22.212 1 73.94 ? CE DLY 165 C 1 HETATM 9 N NZ DLY . . . G 2 46.633 26.834 20.849 1 73.74 ? NZ DLY 165 C 1 HETATM 10 O OXT DLY . . . G 2 49.273 23.368 23.038 1 75.13 ? OXT DLY 165 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #