data_3KO8 # _model_server_result.job_id 3Gzahbe6LI5p1oP8flD8iA _model_server_result.datetime_utc '2024-11-16 03:37:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ko8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 3KO8 # _exptl.entry_id 3KO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KO8 _cell.length_a 100.803 _cell.length_b 100.803 _cell.length_c 76.302 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 76.302 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 3KO8 _atom_sites.fract_transf_matrix[1][1] 0.00992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00992 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 901 901 NAD NAD . C 3 PO4 A 1 1001 1001 PO4 PO4 . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2042 2042 HOH HOH . D 4 HOH A 42 2043 2043 HOH HOH . D 4 HOH A 43 2044 2044 HOH HOH . D 4 HOH A 44 2045 2045 HOH HOH . D 4 HOH A 45 2046 2046 HOH HOH . D 4 HOH A 46 2047 2047 HOH HOH . D 4 HOH A 47 2048 2048 HOH HOH . D 4 HOH A 48 2049 2049 HOH HOH . D 4 HOH A 49 2050 2050 HOH HOH . D 4 HOH A 50 2051 2051 HOH HOH . D 4 HOH A 51 2052 2052 HOH HOH . D 4 HOH A 52 2053 2053 HOH HOH . D 4 HOH A 53 2054 2054 HOH HOH . D 4 HOH A 54 2055 2055 HOH HOH . D 4 HOH A 55 2056 2056 HOH HOH . D 4 HOH A 56 2057 2057 HOH HOH . D 4 HOH A 57 2058 2058 HOH HOH . D 4 HOH A 58 2059 2059 HOH HOH . D 4 HOH A 59 2060 2060 HOH HOH . D 4 HOH A 60 2061 2061 HOH HOH . D 4 HOH A 61 2062 2062 HOH HOH . D 4 HOH A 62 2063 2063 HOH HOH . D 4 HOH A 63 2064 2064 HOH HOH . D 4 HOH A 64 2065 2065 HOH HOH . D 4 HOH A 65 2066 2066 HOH HOH . D 4 HOH A 66 2067 2067 HOH HOH . D 4 HOH A 67 2068 2068 HOH HOH . D 4 HOH A 68 2070 2070 HOH HOH . D 4 HOH A 69 2071 2071 HOH HOH . D 4 HOH A 70 2072 2072 HOH HOH . D 4 HOH A 71 2073 2073 HOH HOH . D 4 HOH A 72 2074 2074 HOH HOH . D 4 HOH A 73 2078 2078 HOH HOH . D 4 HOH A 74 2079 2079 HOH HOH . D 4 HOH A 75 2080 2080 HOH HOH . D 4 HOH A 76 2081 2081 HOH HOH . D 4 HOH A 77 2082 2082 HOH HOH . D 4 HOH A 78 2084 2084 HOH HOH . D 4 HOH A 79 2085 2085 HOH HOH . D 4 HOH A 80 2086 2086 HOH HOH . D 4 HOH A 81 2087 2087 HOH HOH . D 4 HOH A 82 2088 2088 HOH HOH . D 4 HOH A 83 2089 2089 HOH HOH . D 4 HOH A 84 2090 2090 HOH HOH . D 4 HOH A 85 2091 2091 HOH HOH . D 4 HOH A 86 2092 2092 HOH HOH . D 4 HOH A 87 2093 2093 HOH HOH . D 4 HOH A 88 2094 2094 HOH HOH . D 4 HOH A 89 2095 2095 HOH HOH . D 4 HOH A 90 2096 2096 HOH HOH . D 4 HOH A 91 2097 2097 HOH HOH . D 4 HOH A 92 2098 2098 HOH HOH . D 4 HOH A 93 2099 2099 HOH HOH . D 4 HOH A 94 2100 2100 HOH HOH . D 4 HOH A 95 2102 2102 HOH HOH . D 4 HOH A 96 2104 2104 HOH HOH . D 4 HOH A 97 2105 2105 HOH HOH . D 4 HOH A 98 2106 2106 HOH HOH . D 4 HOH A 99 2107 2107 HOH HOH . D 4 HOH A 100 2108 2108 HOH HOH . D 4 HOH A 101 2110 2110 HOH HOH . D 4 HOH A 102 2111 2111 HOH HOH . D 4 HOH A 103 2112 2112 HOH HOH . D 4 HOH A 104 2114 2114 HOH HOH . D 4 HOH A 105 2116 2116 HOH HOH . D 4 HOH A 106 2117 2117 HOH HOH . D 4 HOH A 107 2118 2118 HOH HOH . D 4 HOH A 108 2119 2119 HOH HOH . D 4 HOH A 109 2122 2122 HOH HOH . D 4 HOH A 110 2124 2124 HOH HOH . D 4 HOH A 111 2125 2125 HOH HOH . D 4 HOH A 112 2126 2126 HOH HOH . D 4 HOH A 113 2129 2129 HOH HOH . D 4 HOH A 114 2130 2130 HOH HOH . D 4 HOH A 115 2131 2131 HOH HOH . D 4 HOH A 116 2132 2132 HOH HOH . D 4 HOH A 117 2133 2133 HOH HOH . D 4 HOH A 118 2134 2134 HOH HOH . D 4 HOH A 119 2135 2135 HOH HOH . D 4 HOH A 120 2136 2136 HOH HOH . D 4 HOH A 121 2138 2138 HOH HOH . D 4 HOH A 122 2139 2139 HOH HOH . D 4 HOH A 123 2140 2140 HOH HOH . D 4 HOH A 124 2142 2142 HOH HOH . D 4 HOH A 125 2144 2144 HOH HOH . D 4 HOH A 126 2146 2146 HOH HOH . D 4 HOH A 127 2147 2147 HOH HOH . D 4 HOH A 128 2148 2148 HOH HOH . D 4 HOH A 129 2150 2150 HOH HOH . D 4 HOH A 130 2151 2151 HOH HOH . D 4 HOH A 131 2158 2158 HOH HOH . D 4 HOH A 132 2159 2159 HOH HOH . D 4 HOH A 133 2160 2160 HOH HOH . D 4 HOH A 134 2161 2161 HOH HOH . D 4 HOH A 135 2162 2162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 6.568 13.976 18.533 1 21.64 ? PA NAD 901 A 1 HETATM 2 O O1A NAD . . . B 2 6.331 14.117 17.183 1 22.12 ? O1A NAD 901 A 1 HETATM 3 O O2A NAD . . . B 2 5.438 13.877 19.312 1 20.65 ? O2A NAD 901 A 1 HETATM 4 O O5B NAD . . . B 2 7.375 12.8 18.738 1 20.74 ? O5B NAD 901 A 1 HETATM 5 C C5B NAD . . . B 2 7.37 12.023 19.914 1 20.55 ? C5B NAD 901 A 1 HETATM 6 C C4B NAD . . . B 2 7.225 10.473 19.732 1 18.85 ? C4B NAD 901 A 1 HETATM 7 O O4B NAD . . . B 2 7.308 9.703 20.869 1 19.3 ? O4B NAD 901 A 1 HETATM 8 C C3B NAD . . . B 2 5.871 10.234 19.102 1 16.87 ? C3B NAD 901 A 1 HETATM 9 O O3B NAD . . . B 2 5.987 9.463 17.952 1 20.15 ? O3B NAD 901 A 1 HETATM 10 C C2B NAD . . . B 2 5.15 9.52 20.21 1 17.95 ? C2B NAD 901 A 1 HETATM 11 O O2B NAD . . . B 2 4.18 8.668 19.724 1 19.43 ? O2B NAD 901 A 1 HETATM 12 C C1B NAD . . . B 2 6.311 8.809 20.911 1 18.38 ? C1B NAD 901 A 1 HETATM 13 N N9A NAD . . . B 2 5.968 8.45 22.279 1 18.81 ? N9A NAD 901 A 1 HETATM 14 C C8A NAD . . . B 2 5.469 9.267 23.183 1 21.35 ? C8A NAD 901 A 1 HETATM 15 N N7A NAD . . . B 2 5.282 8.678 24.33 1 20.28 ? N7A NAD 901 A 1 HETATM 16 C C5A NAD . . . B 2 5.653 7.439 24.177 1 18.56 ? C5A NAD 901 A 1 HETATM 17 C C6A NAD . . . B 2 5.672 6.328 25.018 1 21.07 ? C6A NAD 901 A 1 HETATM 18 N N6A NAD . . . B 2 5.257 6.383 26.248 1 20.11 ? N6A NAD 901 A 1 HETATM 19 N N1A NAD . . . B 2 6.144 5.202 24.539 1 19.54 ? N1A NAD 901 A 1 HETATM 20 C C2A NAD . . . B 2 6.555 5.136 23.296 1 20.27 ? C2A NAD 901 A 1 HETATM 21 N N3A NAD . . . B 2 6.54 6.141 22.484 1 18.05 ? N3A NAD 901 A 1 HETATM 22 C C4A NAD . . . B 2 6.105 7.308 22.868 1 17.72 ? C4A NAD 901 A 1 HETATM 23 O O3 NAD . . . B 2 7.432 15.139 19.094 1 20.62 ? O3 NAD 901 A 1 HETATM 24 P PN NAD . . . B 2 8.811 15.706 18.558 1 20.13 ? PN NAD 901 A 1 HETATM 25 O O1N NAD . . . B 2 8.674 17.023 18.436 1 19.05 ? O1N NAD 901 A 1 HETATM 26 O O2N NAD . . . B 2 9.242 14.956 17.517 1 22.6 ? O2N NAD 901 A 1 HETATM 27 O O5D NAD . . . B 2 9.718 15.549 19.696 1 20.62 ? O5D NAD 901 A 1 HETATM 28 C C5D NAD . . . B 2 10.656 14.542 19.837 1 19.98 ? C5D NAD 901 A 1 HETATM 29 C C4D NAD . . . B 2 11.681 14.793 20.985 1 17.95 ? C4D NAD 901 A 1 HETATM 30 O O4D NAD . . . B 2 12.315 16.011 20.839 1 19.09 ? O4D NAD 901 A 1 HETATM 31 C C3D NAD . . . B 2 10.993 14.783 22.372 1 17.01 ? C3D NAD 901 A 1 HETATM 32 O O3D NAD . . . B 2 11.717 14.097 23.312 1 18.7 ? O3D NAD 901 A 1 HETATM 33 C C2D NAD . . . B 2 10.877 16.272 22.613 1 19.28 ? C2D NAD 901 A 1 HETATM 34 O O2D NAD . . . B 2 10.87 16.688 23.927 1 20.39 ? O2D NAD 901 A 1 HETATM 35 C C1D NAD . . . B 2 12.118 16.795 21.91 1 22.68 ? C1D NAD 901 A 1 HETATM 36 N N1N NAD . . . B 2 12.03 18.202 21.597 1 18.06 ? N1N NAD 901 A 1 HETATM 37 C C2N NAD . . . B 2 11.43 18.604 20.44 1 17.11 ? C2N NAD 901 A 1 HETATM 38 C C3N NAD . . . B 2 11.324 19.936 20.118 1 20.27 ? C3N NAD 901 A 1 HETATM 39 C C7N NAD . . . B 2 10.689 20.447 18.818 1 20.48 ? C7N NAD 901 A 1 HETATM 40 O O7N NAD . . . B 2 10.78 21.606 18.528 1 25.72 ? O7N NAD 901 A 1 HETATM 41 N N7N NAD . . . B 2 10.093 19.576 18.085 1 17.46 ? N7N NAD 901 A 1 HETATM 42 C C4N NAD . . . B 2 11.838 20.853 20.994 1 23.98 ? C4N NAD 901 A 1 HETATM 43 C C5N NAD . . . B 2 12.427 20.452 22.158 1 19.85 ? C5N NAD 901 A 1 HETATM 44 C C6N NAD . . . B 2 12.523 19.118 22.458 1 17.65 ? C6N NAD 901 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #