data_3KO9 # _model_server_result.job_id iZ_6LVHPbrFc2IgQDXfdxg _model_server_result.datetime_utc '2024-11-24 17:47:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ko9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":165}' # _entry.id 3KO9 # _exptl.entry_id 3KO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-ARGININE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 106.94 _cell.angle_beta 101.63 _cell.angle_gamma 94.49 _cell.entry_id 3KO9 _cell.length_a 52.252 _cell.length_b 54.863 _cell.length_c 92.419 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G 1 1 C,D 2 1 E,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id DAR _chem_comp.mon_nstd_flag . _chem_comp.name D-ARGININE _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DAR sing 83 n n N H DAR sing 84 n n N H2 DAR sing 85 n n CA CB DAR sing 86 n n CA C DAR sing 87 n n CA HA DAR sing 88 n n CB CG DAR sing 89 n n CB HB2 DAR sing 90 n n CB HB3 DAR sing 91 n n CG CD DAR sing 92 n n CG HG2 DAR sing 93 n n CG HG3 DAR sing 94 n n CD NE DAR sing 95 n n CD HD2 DAR sing 96 n n CD HD3 DAR sing 97 n n NE CZ DAR sing 98 n n NE HE DAR sing 99 n n CZ NH1 DAR sing 100 n n CZ NH2 DAR doub 101 n n NH1 HH11 DAR sing 102 n n NH1 HH12 DAR sing 103 n n NH2 HH21 DAR sing 104 n n NH2 HH22 DAR sing 105 n n C O DAR doub 106 n n C OXT DAR sing 107 n n OXT HXT DAR sing 108 n n # _atom_sites.entry_id 3KO9 _atom_sites.fract_transf_matrix[1][1] 0.019138 _atom_sites.fract_transf_matrix[1][2] 0.001502 _atom_sites.fract_transf_matrix[1][3] 0.004647 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018283 _atom_sites.fract_transf_matrix[2][3] 0.006059 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id G _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DAR _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 165 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id DAR _pdbx_nonpoly_scheme.auth_mon_id DAR _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DAR . . . G 2 15.58 7.342 1.545 1 78.07 ? N DAR 165 B 1 HETATM 2 C CA DAR . . . G 2 16.144 6.104 2.172 1 78.24 ? CA DAR 165 B 1 HETATM 3 C CB DAR . . . G 2 15.013 5.204 2.676 1 78.01 ? CB DAR 165 B 1 HETATM 4 C CG DAR . . . G 2 14.737 4.015 1.758 1 76.73 ? CG DAR 165 B 1 HETATM 5 C CD DAR . . . G 2 13.765 3.071 2.47 1 76.7 ? CD DAR 165 B 1 HETATM 6 N NE DAR . . . G 2 14.373 1.933 3.161 1 77.14 ? NE DAR 165 B 1 HETATM 7 C CZ DAR . . . G 2 14.943 1.958 4.381 1 77.16 ? CZ DAR 165 B 1 HETATM 8 N NH1 DAR . . . G 2 15.465 0.847 4.894 1 76.07 ? NH1 DAR 165 B 1 HETATM 9 N NH2 DAR . . . G 2 15.019 3.073 5.117 1 78.74 ? NH2 DAR 165 B 1 HETATM 10 C C DAR . . . G 2 17.176 6.413 3.247 1 78.45 ? C DAR 165 B 1 HETATM 11 O O DAR . . . G 2 18.259 5.815 3.271 1 78.54 ? O DAR 165 B 1 HETATM 12 O OXT DAR . . . G 2 17 7.274 4.122 1 78.42 ? OXT DAR 165 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 700 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #