data_3KOB # _model_server_result.job_id 9KlAneYeYksJdk2x3TAxTw _model_server_result.datetime_utc '2024-10-13 19:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":165}' # _entry.id 3KOB # _exptl.entry_id 3KOB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D-GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 106.86 _cell.angle_beta 102.1 _cell.angle_gamma 94.35 _cell.entry_id 3KOB _cell.length_a 51.948 _cell.length_b 54.656 _cell.length_c 92.619 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KOB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G 1 1 C,D 2 1 E,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id DGL _chem_comp.mon_nstd_flag . _chem_comp.name 'D-GLUTAMIC ACID' _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DGL sing 83 n n N H DGL sing 84 n n N H2 DGL sing 85 n n CA C DGL sing 86 n n CA CB DGL sing 87 n n CA HA DGL sing 88 n n C O DGL doub 89 n n C OXT DGL sing 90 n n CB CG DGL sing 91 n n CB HB2 DGL sing 92 n n CB HB3 DGL sing 93 n n CG CD DGL sing 94 n n CG HG2 DGL sing 95 n n CG HG3 DGL sing 96 n n CD OE1 DGL doub 97 n n CD OE2 DGL sing 98 n n OE2 HE2 DGL sing 99 n n OXT HXT DGL sing 100 n n # _atom_sites.entry_id 3KOB _atom_sites.fract_transf_matrix[1][1] 0.01925 _atom_sites.fract_transf_matrix[1][2] 0.001464 _atom_sites.fract_transf_matrix[1][3] 0.004829 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018349 _atom_sites.fract_transf_matrix[2][3] 0.006063 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011629 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id G _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DGL _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 165 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id DGL _pdbx_nonpoly_scheme.auth_mon_id DGL _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DGL . . . G 2 -11.869 -7.309 -3.86 1 92.83 ? N DGL 165 B 1 HETATM 2 C CA DGL . . . G 2 -11.409 -8.035 -5.079 1 92.91 ? CA DGL 165 B 1 HETATM 3 C C DGL . . . G 2 -12.186 -9.3 -5.295 1 92.99 ? C DGL 165 B 1 HETATM 4 O O DGL . . . G 2 -13.336 -9.418 -4.871 1 92.91 ? O DGL 165 B 1 HETATM 5 C CB DGL . . . G 2 -11.548 -7.138 -6.303 1 92.7 ? CB DGL 165 B 1 HETATM 6 C CG DGL . . . G 2 -10.804 -7.724 -7.497 1 92.56 ? CG DGL 165 B 1 HETATM 7 C CD DGL . . . G 2 -11.562 -7.411 -8.765 1 92.22 ? CD DGL 165 B 1 HETATM 8 O OE1 DGL . . . G 2 -11.542 -6.238 -9.198 1 91.91 ? OE1 DGL 165 B 1 HETATM 9 O OE2 DGL . . . G 2 -12.18 -8.336 -9.335 1 91.67 ? OE2 DGL 165 B 1 HETATM 10 O OXT DGL . . . G 2 -11.682 -10.144 -5.867 1 93.18 ? OXT DGL 165 B 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #