data_3KOD # _model_server_result.job_id UkK7Cwj5tIw21QE0Cr7OYQ _model_server_result.datetime_utc '2024-10-12 04:22:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":165}' # _entry.id 3KOD # _exptl.entry_id 3KOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 105.093 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-SERINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 106.86 _cell.angle_beta 101.86 _cell.angle_gamma 94.45 _cell.entry_id 3KOD _cell.length_a 52.281 _cell.length_b 55.147 _cell.length_c 92.535 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G 1 1 C,D,H,I,J 2 1 E,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C3 H7 N O3' _chem_comp.formula_weight 105.093 _chem_comp.id DSN _chem_comp.mon_nstd_flag . _chem_comp.name D-SERINE _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DSN sing 83 n n N H DSN sing 84 n n N H2 DSN sing 85 n n CA C DSN sing 86 n n CA CB DSN sing 87 n n CA HA DSN sing 88 n n C O DSN doub 89 n n C OXT DSN sing 90 n n OXT HXT DSN sing 91 n n CB OG DSN sing 92 n n CB HB2 DSN sing 93 n n CB HB3 DSN sing 94 n n OG HG DSN sing 95 n n # _atom_sites.entry_id 3KOD _atom_sites.fract_transf_matrix[1][1] 0.019127 _atom_sites.fract_transf_matrix[1][2] 0.001488 _atom_sites.fract_transf_matrix[1][3] 0.004722 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018188 _atom_sites.fract_transf_matrix[2][3] 0.006008 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011629 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 DSN B 1 165 1 DSN DSN . H 2 DSN C 1 165 1 DSN DSN . I 2 DSN D 1 165 1 DSN DSN . J 2 DSN D 1 166 1 DSN DSN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DSN . . . I 2 -16.384 -9.487 28.905 1 131.54 ? N DSN 165 D 1 HETATM 2 C CA DSN . . . I 2 -16.82 -10.788 29.507 1 131.46 ? CA DSN 165 D 1 HETATM 3 C C DSN . . . I 2 -15.862 -11.921 29.218 1 131.35 ? C DSN 165 D 1 HETATM 4 O O DSN . . . I 2 -16.273 -12.971 28.73 1 131.38 ? O DSN 165 D 1 HETATM 5 O OXT DSN . . . I 2 -14.653 -11.85 29.445 1 131.18 ? OXT DSN 165 D 1 HETATM 6 C CB DSN . . . I 2 -17.017 -10.63 31.016 1 131.48 ? CB DSN 165 D 1 HETATM 7 O OG DSN . . . I 2 -15.788 -10.183 31.613 1 131.37 ? OG DSN 165 D 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #