data_3KOH # _model_server_result.job_id L_H7yZU497M9_IKo8GqFcg _model_server_result.datetime_utc '2024-12-12 09:49:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3koh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3KOH # _exptl.entry_id 3KOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 210.273 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '8-(1H-imidazol-1-yl)octanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KOH _cell.length_a 71.185 _cell.length_b 71.185 _cell.length_c 224.862 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D N14 OIO . A OIO 1 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc2 A SG CYS 416 A CYS 437 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc3 F N14 OIO . B OIO 1 1_555 E FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc4 B SG CYS 416 B CYS 437 1_555 E FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? # _chem_comp.formula 'C11 H18 N2 O2' _chem_comp.formula_weight 210.273 _chem_comp.id OIO _chem_comp.mon_nstd_flag . _chem_comp.name '8-(1H-imidazol-1-yl)octanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 OIO sing 319 n n C1 N11 OIO sing 320 n n C1 H1 OIO sing 321 n n C1 H1A OIO sing 322 n n C3 C2 OIO sing 323 n n C2 H2 OIO sing 324 n n C2 H2A OIO sing 325 n n C4 C3 OIO sing 326 n n C3 H3 OIO sing 327 n n C3 H3A OIO sing 328 n n C5 C4 OIO sing 329 n n C4 H4 OIO sing 330 n n C4 H4A OIO sing 331 n n C6 C5 OIO sing 332 n n C5 H5 OIO sing 333 n n C5 H5A OIO sing 334 n n C7 C6 OIO sing 335 n n C6 H6 OIO sing 336 n n C6 H6A OIO sing 337 n n C8 C7 OIO sing 338 n n C7 H7 OIO sing 339 n n C7 H7A OIO sing 340 n n O9 C8 OIO doub 341 n n O10 C8 OIO sing 342 n n O10 HO10 OIO sing 343 n n N11 C15 OIO sing 344 n y N11 C12 OIO sing 345 n y C12 C13 OIO doub 346 n y C12 H12 OIO sing 347 n n N14 C13 OIO sing 348 n y C13 H13 OIO sing 349 n n C15 N14 OIO doub 350 n y C15 H15 OIO sing 351 n n # _atom_sites.entry_id 3KOH _atom_sites.fract_transf_matrix[1][1] 0.014048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 OIO A 1 1 1 OIO OIO . E 2 HEM B 1 500 500 HEM HEM . F 3 OIO B 1 1 1 OIO OIO . G 4 HOH A 1 7 7 HOH HOH . G 4 HOH A 2 9 9 HOH HOH . G 4 HOH A 3 15 15 HOH HOH . G 4 HOH A 4 498 498 HOH HOH . G 4 HOH A 5 499 499 HOH HOH . G 4 HOH A 6 501 501 HOH HOH . H 4 HOH B 1 498 498 HOH HOH . H 4 HOH B 2 499 499 HOH HOH . H 4 HOH B 3 501 501 HOH HOH . H 4 HOH B 4 502 502 HOH HOH . H 4 HOH B 5 503 503 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OIO . . . F 3 31.153 31.671 -22.394 1 61.34 ? C1 OIO 1 B 1 HETATM 2 C C2 OIO . . . F 3 31.832 30.806 -23.447 1 61.96 ? C2 OIO 1 B 1 HETATM 3 C C3 OIO . . . F 3 31.683 31.165 -24.904 1 62.56 ? C3 OIO 1 B 1 HETATM 4 C C4 OIO . . . F 3 30.815 30.145 -25.635 1 63.11 ? C4 OIO 1 B 1 HETATM 5 C C5 OIO . . . F 3 31.441 29.52 -26.875 1 62.59 ? C5 OIO 1 B 1 HETATM 6 C C6 OIO . . . F 3 30.427 28.702 -27.654 1 61.61 ? C6 OIO 1 B 1 HETATM 7 C C7 OIO . . . F 3 31.094 27.634 -28.489 1 61.24 ? C7 OIO 1 B 1 HETATM 8 C C8 OIO . . . F 3 30.041 26.738 -29.086 1 61.89 ? C8 OIO 1 B 1 HETATM 9 O O9 OIO . . . F 3 29.209 27.231 -29.839 1 59.24 ? O9 OIO 1 B 1 HETATM 10 O O10 OIO . . . F 3 30.041 25.533 -28.822 1 62.01 ? O10 OIO 1 B 1 HETATM 11 N N11 OIO . . . F 3 31.233 30.911 -21.146 1 59.67 ? N11 OIO 1 B 1 HETATM 12 C C12 OIO . . . F 3 30.234 30.428 -20.454 1 58.61 ? C12 OIO 1 B 1 HETATM 13 C C13 OIO . . . F 3 30.781 29.783 -19.394 1 58.17 ? C13 OIO 1 B 1 HETATM 14 N N14 OIO . . . F 3 32.095 29.894 -19.452 1 56.96 ? N14 OIO 1 B 1 HETATM 15 C C15 OIO . . . F 3 32.358 30.59 -20.545 1 58.7 ? C15 OIO 1 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 15 #