data_3KOW
#
_model_server_result.job_id            GQL42MosRQDH6ABfuwWmIQ 
_model_server_result.datetime_utc      '2025-04-07 11:59:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kow 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":1802}' 
#
_entry.id    3KOW 
#
_exptl.entry_id    3KOW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.76 
_cell.angle_gamma         90 
_cell.entry_id            3KOW 
_cell.length_a            65.18 
_cell.length_b            229.01 
_cell.length_c            123.92 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KOW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA tetrameric 4 software_defined_assembly 5 
PISA tetrameric 4 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
E,F,N,O,P 1 1 
G,H,Q,R,S 2 1 
A,B,I,J,K 3 1 
C,D,L,M 4 1 
A,B,E,F,I,J,K,N,O,P 5 1 
C,D,G,H,L,M,Q,R,S 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 L N N 
? 4 N N N 
? 4 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 626 A LYS 629 1_555 J C4A PLP . A PLP 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? 
covale ? covale2 C NZ LYS 626 B LYS 629 1_555 L C4A PLP . B PLP 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.635 ? 
covale ? covale3 E NZ LYS 626 C LYS 629 1_555 N C4A PLP . C PLP 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? 
covale ? covale4 G NZ LYS 626 D LYS 629 1_555 R C4A PLP . D PLP 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? 
metalc ? metalc1 A NE2 HIS 615 A HIS 618 1_555 I CO B12 . A B12 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc2 K C5' 5AD . A 5AD 1500 1_555 P CO B12 . C B12 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc3 I CO B12 . A B12 1801 1_555 O C5' 5AD . C 5AD 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc4 C NE2 HIS 615 B HIS 618 1_555 M CO B12 . B B12 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc5 M CO B12 . B B12 1801 1_555 S C5' 5AD . D 5AD 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc6 E NE2 HIS 615 C HIS 618 1_555 P CO B12 . C B12 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc7 G NE2 HIS 615 D HIS 618 1_555 Q CO B12 . D B12 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 481 n y 
N1 C6 PLP sing 482 n y 
C2 C2A PLP sing 483 n n 
C2 C3 PLP sing 484 n y 
C2A H2A1 PLP sing 485 n n 
C2A H2A2 PLP sing 486 n n 
C2A H2A3 PLP sing 487 n n 
C3 O3 PLP sing 488 n n 
C3 C4 PLP doub 489 n y 
O3 HO3 PLP sing 490 n n 
C4 C4A PLP sing 491 n n 
C4 C5 PLP sing 492 n y 
C4A O4A PLP doub 493 n n 
C4A H4A PLP sing 494 n n 
C5 C6 PLP doub 495 n y 
C5 C5A PLP sing 496 n n 
C6 H6 PLP sing 497 n n 
C5A O4P PLP sing 498 n n 
C5A H5A1 PLP sing 499 n n 
C5A H5A2 PLP sing 500 n n 
O4P P PLP sing 501 n n 
P O1P PLP doub 502 n n 
P O2P PLP sing 503 n n 
P O3P PLP sing 504 n n 
O2P HOP2 PLP sing 505 n n 
O3P HOP3 PLP sing 506 n n 
#
_atom_sites.entry_id                     3KOW 
_atom_sites.fract_transf_matrix[1][1]    0.015342 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003474 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004367 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008274 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 B12 A 1 1801 1801 B12 B12 . 
J 4 PLP A 1 1802 1802 PLP PLP . 
K 5 5AD A 1 1500 1500 5AD 5AD . 
L 4 PLP B 1 1802 1802 PLP PLP . 
M 3 B12 B 1 1801 1801 B12 B12 . 
N 4 PLP C 1 1802 1802 PLP PLP . 
O 5 5AD C 1 1500 1500 5AD 5AD . 
P 3 B12 C 1 1801 1801 B12 B12 . 
Q 3 B12 D 1 1801 1801 B12 B12 . 
R 4 PLP D 1 1802 1802 PLP PLP . 
S 5 5AD D 1 1500 1500 5AD 5AD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . R 4 24.149 46.311 40.375 1 25.95 ? N1 PLP 1802 D 1 
HETATM 2 C C2 PLP . . . R 4 23.524 47.026 39.438 1 27.89 ? C2 PLP 1802 D 1 
HETATM 3 C C2A PLP . . . R 4 23.847 48.477 39.288 1 26.35 ? C2A PLP 1802 D 1 
HETATM 4 C C3 PLP . . . R 4 22.582 46.417 38.602 1 29.16 ? C3 PLP 1802 D 1 
HETATM 5 O O3 PLP . . . R 4 21.956 47.215 37.696 1 27.89 ? O3 PLP 1802 D 1 
HETATM 6 C C4 PLP . . . R 4 22.275 45.06 38.72 1 35.17 ? C4 PLP 1802 D 1 
HETATM 7 C C4A PLP . . . R 4 21.266 44.433 37.82 1 32.28 ? C4A PLP 1802 D 1 
HETATM 8 C C5 PLP . . . R 4 22.927 44.311 39.697 1 38.32 ? C5 PLP 1802 D 1 
HETATM 9 C C6 PLP . . . R 4 23.852 44.913 40.52 1 29.05 ? C6 PLP 1802 D 1 
HETATM 10 C C5A PLP . . . R 4 22.683 42.84 39.917 1 38.33 ? C5A PLP 1802 D 1 
HETATM 11 O O4P PLP . . . R 4 23.557 42.181 40.775 1 32.09 ? O4P PLP 1802 D 1 
HETATM 12 P P PLP . . . R 4 23.015 41.253 41.897 1 38.87 ? P PLP 1802 D 1 
HETATM 13 O O1P PLP . . . R 4 24.213 40.723 42.731 1 35.68 ? O1P PLP 1802 D 1 
HETATM 14 O O2P PLP . . . R 4 22.274 40.015 41.32 1 43.37 ? O2P PLP 1802 D 1 
HETATM 15 O O3P PLP . . . R 4 22.053 42.031 42.754 1 35.29 ? O3P PLP 1802 D 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#