data_3KP2 # _model_server_result.job_id wWx9XsiPmzhKAw7Rd1B_mw _model_server_result.datetime_utc '2024-11-28 09:17:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kp2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":5002}' # _entry.id 3KP2 # _exptl.entry_id 3KP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 334.39 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENICILLIN G' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KP2 _cell.length_a 106.824 _cell.length_b 106.824 _cell.length_c 46.353 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C16 H18 N2 O4 S' _chem_comp.formula_weight 334.39 _chem_comp.id PNN _chem_comp.mon_nstd_flag . _chem_comp.name 'PENICILLIN G' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C7 PNN doub 257 n n C7 N4 PNN sing 258 n n C7 C6 PNN sing 259 n n N4 C3 PNN sing 260 n n N4 C5 PNN sing 261 n n C3 C11 PNN sing 262 n n C3 C2 PNN sing 263 n n C3 HC3 PNN sing 264 n n C11 O13 PNN sing 265 n n C11 O12 PNN doub 266 n n O13 HXT PNN sing 267 n n C2 C10 PNN sing 268 n n C2 C9 PNN sing 269 n n C2 S1 PNN sing 270 n n C10 H101 PNN sing 271 n n C10 H102 PNN sing 272 n n C10 H103 PNN sing 273 n n C9 HC91 PNN sing 274 n n C9 HC92 PNN sing 275 n n C9 HC93 PNN sing 276 n n S1 C5 PNN sing 277 n n C5 C6 PNN sing 278 n n C5 HC5 PNN sing 279 n n C6 N14 PNN sing 280 n n C6 HC6 PNN sing 281 n n N14 C15 PNN sing 282 n n N14 H14 PNN sing 283 n n C15 O16 PNN doub 284 n n C15 C17 PNN sing 285 n n C17 C18 PNN sing 286 n n C17 H171 PNN sing 287 n n C17 H172 PNN sing 288 n n C18 C19 PNN doub 289 n y C18 C23 PNN sing 290 n y C19 C20 PNN sing 291 n y C19 H19 PNN sing 292 n n C20 C21 PNN doub 293 n y C20 H20 PNN sing 294 n n C21 C22 PNN sing 295 n y C21 H21 PNN sing 296 n n C22 C23 PNN doub 297 n y C22 H22 PNN sing 298 n n C23 H23 PNN sing 299 n n # _atom_sites.entry_id 3KP2 _atom_sites.fract_transf_matrix[1][1] 0.009361 _atom_sites.fract_transf_matrix[1][2] 0.005405 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PNN A 1 5001 5001 PNN DRG . D 3 CAC B 1 4001 4001 CAC CAC . E 2 PNN B 1 5002 5002 PNN DRG . F 4 HOH A 1 3001 3001 HOH WAT . F 4 HOH A 2 3004 3004 HOH WAT . F 4 HOH A 3 3005 3005 HOH WAT . F 4 HOH A 4 3008 3008 HOH WAT . F 4 HOH A 5 3013 3013 HOH WAT . F 4 HOH A 6 3014 3014 HOH WAT . F 4 HOH A 7 3016 3016 HOH WAT . F 4 HOH A 8 3018 3018 HOH WAT . F 4 HOH A 9 3019 3019 HOH WAT . F 4 HOH A 10 3021 3021 HOH WAT . F 4 HOH A 11 3022 3022 HOH WAT . F 4 HOH A 12 3025 3025 HOH WAT . F 4 HOH A 13 3027 3027 HOH WAT . F 4 HOH A 14 3030 3030 HOH WAT . F 4 HOH A 15 3033 3033 HOH WAT . F 4 HOH A 16 3034 3034 HOH WAT . F 4 HOH A 17 3036 3036 HOH WAT . F 4 HOH A 18 3037 3037 HOH WAT . F 4 HOH A 19 3039 3039 HOH WAT . F 4 HOH A 20 3040 3040 HOH WAT . F 4 HOH A 21 3042 3042 HOH WAT . F 4 HOH A 22 3044 3044 HOH WAT . F 4 HOH A 23 3045 3045 HOH WAT . F 4 HOH A 24 3046 3046 HOH WAT . F 4 HOH A 25 3047 3047 HOH WAT . F 4 HOH A 26 3051 3051 HOH WAT . F 4 HOH A 27 3053 3053 HOH WAT . F 4 HOH A 28 3055 3055 HOH WAT . F 4 HOH A 29 3056 3056 HOH WAT . F 4 HOH A 30 3057 3057 HOH WAT . F 4 HOH A 31 3058 3058 HOH WAT . F 4 HOH A 32 3061 3061 HOH WAT . F 4 HOH A 33 3062 3062 HOH WAT . F 4 HOH A 34 3064 3064 HOH WAT . F 4 HOH A 35 3065 3065 HOH WAT . F 4 HOH A 36 3067 3067 HOH WAT . F 4 HOH A 37 3072 3072 HOH WAT . F 4 HOH A 38 3073 3073 HOH WAT . F 4 HOH A 39 3074 3074 HOH WAT . F 4 HOH A 40 3075 3075 HOH WAT . F 4 HOH A 41 3076 3076 HOH WAT . F 4 HOH A 42 3080 3080 HOH WAT . F 4 HOH A 43 3081 3081 HOH WAT . F 4 HOH A 44 3084 3084 HOH WAT . F 4 HOH A 45 3085 3085 HOH WAT . F 4 HOH A 46 3087 3087 HOH WAT . G 4 HOH B 1 3002 3002 HOH WAT . G 4 HOH B 2 3003 3003 HOH WAT . G 4 HOH B 3 3006 3006 HOH WAT . G 4 HOH B 4 3007 3007 HOH WAT . G 4 HOH B 5 3009 3009 HOH WAT . G 4 HOH B 6 3010 3010 HOH WAT . G 4 HOH B 7 3011 3011 HOH WAT . G 4 HOH B 8 3012 3012 HOH WAT . G 4 HOH B 9 3015 3015 HOH WAT . G 4 HOH B 10 3017 3017 HOH WAT . G 4 HOH B 11 3020 3020 HOH WAT . G 4 HOH B 12 3023 3023 HOH WAT . G 4 HOH B 13 3024 3024 HOH WAT . G 4 HOH B 14 3026 3026 HOH WAT . G 4 HOH B 15 3028 3028 HOH WAT . G 4 HOH B 16 3029 3029 HOH WAT . G 4 HOH B 17 3031 3031 HOH WAT . G 4 HOH B 18 3032 3032 HOH WAT . G 4 HOH B 19 3035 3035 HOH WAT . G 4 HOH B 20 3038 3038 HOH WAT . G 4 HOH B 21 3041 3041 HOH WAT . G 4 HOH B 22 3043 3043 HOH WAT . G 4 HOH B 23 3048 3048 HOH WAT . G 4 HOH B 24 3049 3049 HOH WAT . G 4 HOH B 25 3050 3050 HOH WAT . G 4 HOH B 26 3052 3052 HOH WAT . G 4 HOH B 27 3054 3054 HOH WAT . G 4 HOH B 28 3059 3059 HOH WAT . G 4 HOH B 29 3060 3060 HOH WAT . G 4 HOH B 30 3063 3063 HOH WAT . G 4 HOH B 31 3066 3066 HOH WAT . G 4 HOH B 32 3068 3068 HOH WAT . G 4 HOH B 33 3069 3069 HOH WAT . G 4 HOH B 34 3070 3070 HOH WAT . G 4 HOH B 35 3071 3071 HOH WAT . G 4 HOH B 36 3077 3077 HOH WAT . G 4 HOH B 37 3078 3078 HOH WAT . G 4 HOH B 38 3079 3079 HOH WAT . G 4 HOH B 39 3082 3082 HOH WAT . G 4 HOH B 40 3083 3083 HOH WAT . G 4 HOH B 41 3086 3086 HOH WAT . G 4 HOH B 42 3088 3088 HOH WAT . G 4 HOH B 43 3089 3089 HOH WAT . G 4 HOH B 44 3090 3090 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 PNN . . . E 2 31.088 -47.395 -2.503 1 64.12 ? O8 PNN 5002 B 1 HETATM 2 C C7 PNN . . . E 2 29.945 -47.773 -2.756 1 65.33 ? C7 PNN 5002 B 1 HETATM 3 N N4 PNN . . . E 2 29.013 -47.395 -3.646 1 63.9 ? N4 PNN 5002 B 1 HETATM 4 C C3 PNN . . . E 2 28.381 -46.75 -4.818 1 65.07 ? C3 PNN 5002 B 1 HETATM 5 C C11 PNN . . . E 2 28.826 -47.379 -6.143 1 63.36 ? C11 PNN 5002 B 1 HETATM 6 O O13 PNN . . . E 2 29.82 -48.135 -6.082 1 62.67 ? O13 PNN 5002 B 1 HETATM 7 O O12 PNN . . . E 2 28.24 -47.006 -7.188 1 60.12 ? O12 PNN 5002 B 1 HETATM 8 C C2 PNN . . . E 2 26.848 -46.743 -4.667 1 63.86 ? C2 PNN 5002 B 1 HETATM 9 C C10 PNN . . . E 2 26.133 -47.682 -5.64 1 62.16 ? C10 PNN 5002 B 1 HETATM 10 C C9 PNN . . . E 2 26.331 -45.306 -4.786 1 66.19 ? C9 PNN 5002 B 1 HETATM 11 S S1 PNN . . . E 2 26.565 -47.441 -2.998 1 66.56 ? S1 PNN 5002 B 1 HETATM 12 C C5 PNN . . . E 2 28.087 -48.437 -3.155 1 64.84 ? C5 PNN 5002 B 1 HETATM 13 C C6 PNN . . . E 2 28.931 -48.524 -1.888 1 66.1 ? C6 PNN 5002 B 1 HETATM 14 N N14 PNN . . . E 2 28.579 -47.556 -0.828 1 66.6 ? N14 PNN 5002 B 1 HETATM 15 C C15 PNN . . . E 2 29.33 -47.376 0.264 1 64.33 ? C15 PNN 5002 B 1 HETATM 16 O O16 PNN . . . E 2 29.111 -46.528 1.136 1 62.91 ? O16 PNN 5002 B 1 HETATM 17 C C17 PNN . . . E 2 30.599 -48.241 0.356 1 64.27 ? C17 PNN 5002 B 1 HETATM 18 C C18 PNN . . . E 2 30.76 -48.679 1.816 1 63.04 ? C18 PNN 5002 B 1 HETATM 19 C C19 PNN . . . E 2 31.405 -47.839 2.718 1 61.02 ? C19 PNN 5002 B 1 HETATM 20 C C20 PNN . . . E 2 31.443 -48.164 4.072 1 62.42 ? C20 PNN 5002 B 1 HETATM 21 C C21 PNN . . . E 2 30.838 -49.323 4.55 1 61.39 ? C21 PNN 5002 B 1 HETATM 22 C C22 PNN . . . E 2 30.202 -50.169 3.648 1 62.25 ? C22 PNN 5002 B 1 HETATM 23 C C23 PNN . . . E 2 30.169 -49.848 2.292 1 62.45 ? C23 PNN 5002 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 23 #