data_3KP3
#
_model_server_result.job_id            WbSVF9Vd9nBFokTGJ0SAGQ 
_model_server_result.datetime_utc      '2024-10-11 17:33:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kp3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2001}' 
#
_entry.id    3KP3 
#
_exptl.entry_id    3KP3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              349.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3KP3 
_cell.length_a            108.033 
_cell.length_b            108.033 
_cell.length_c            49.76 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KP3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C16 H19 N3 O4 S' 
_chem_comp.formula_weight    349.405 
_chem_comp.id                AIC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'AMPICILLIN;D(-)-ALPHA-AMINOBENZYLPENICILLIN;6-[D(-)-ALPHA-AMINOPHENYLLACETAMIDO]PENICILLANIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 AIC doub 1 n y 
C8 C9 AIC sing 2 n y 
C8 HC8 AIC sing 3 n n 
C5 C4 AIC sing 4 n n 
C5 C7 AIC sing 5 n y 
C5 C11 AIC doub 6 n y 
C6 C1 AIC sing 7 n n 
C6 C12 AIC sing 8 n n 
C6 C16 AIC sing 9 n n 
C6 S1 AIC sing 10 n n 
N1 C3 AIC sing 11 n n 
N1 C14 AIC sing 12 n n 
N1 HN1 AIC sing 13 n n 
C2 C12 AIC sing 14 n n 
C2 O1 AIC doub 15 n n 
C2 O2 AIC sing 16 n n 
N3 C12 AIC sing 17 n n 
N3 C13 AIC sing 18 n n 
N3 C15 AIC sing 19 n n 
C4 C3 AIC sing 20 n n 
C4 N2 AIC sing 21 n n 
C4 HC4 AIC sing 22 n n 
C1 HC1 AIC sing 23 n n 
C1 HC2 AIC sing 24 n n 
C1 HC3 AIC sing 25 n n 
C3 O3 AIC doub 26 n n 
C7 HC7 AIC sing 27 n n 
C9 C10 AIC doub 28 n y 
C9 HC9 AIC sing 29 n n 
C10 C11 AIC sing 30 n y 
C10 HC01 AIC sing 31 n n 
C11 HC11 AIC sing 32 n n 
C12 HC21 AIC sing 33 n n 
C13 C14 AIC sing 34 n n 
C13 S1 AIC sing 35 n n 
C13 HC31 AIC sing 36 n n 
C14 C15 AIC sing 37 n n 
C14 HC41 AIC sing 38 n n 
C15 O4 AIC doub 39 n n 
C16 H161 AIC sing 40 n n 
C16 H162 AIC sing 41 n n 
C16 H163 AIC sing 42 n n 
N2 HN21 AIC sing 43 n n 
N2 HN22 AIC sing 44 n n 
O2 HO2 AIC sing 45 n n 
#
_atom_sites.entry_id                     3KP3 
_atom_sites.fract_transf_matrix[1][1]    0.009256 
_atom_sites.fract_transf_matrix[1][2]    0.005344 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010688 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020096 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AIC B 1 2001 2001 AIC DRG . 
D 2 AIC B 1 2002 2002 AIC DRG . 
E 3 HOH A 1 1001 1001 HOH WAT . 
E 3 HOH A 2 1004 1004 HOH WAT . 
E 3 HOH A 3 1006 1006 HOH WAT . 
E 3 HOH A 4 1008 1008 HOH WAT . 
E 3 HOH A 5 1011 1011 HOH WAT . 
E 3 HOH A 6 1012 1012 HOH WAT . 
E 3 HOH A 7 1018 1018 HOH WAT . 
E 3 HOH A 8 1019 1019 HOH WAT . 
E 3 HOH A 9 1020 1020 HOH WAT . 
E 3 HOH A 10 1023 1023 HOH WAT . 
E 3 HOH A 11 1024 1024 HOH WAT . 
E 3 HOH A 12 1025 1025 HOH WAT . 
E 3 HOH A 13 1026 1026 HOH WAT . 
E 3 HOH A 14 1027 1027 HOH WAT . 
E 3 HOH A 15 1029 1029 HOH WAT . 
E 3 HOH A 16 1031 1031 HOH WAT . 
E 3 HOH A 17 1032 1032 HOH WAT . 
E 3 HOH A 18 1034 1034 HOH WAT . 
E 3 HOH A 19 1036 1036 HOH WAT . 
E 3 HOH A 20 1037 1037 HOH WAT . 
E 3 HOH A 21 1044 1044 HOH WAT . 
E 3 HOH A 22 1046 1046 HOH WAT . 
E 3 HOH A 23 1047 1047 HOH WAT . 
E 3 HOH A 24 1048 1048 HOH WAT . 
E 3 HOH A 25 1050 1050 HOH WAT . 
E 3 HOH A 26 1059 1059 HOH WAT . 
E 3 HOH A 27 1063 1063 HOH WAT . 
E 3 HOH A 28 1070 1070 HOH WAT . 
E 3 HOH A 29 1071 1071 HOH WAT . 
E 3 HOH A 30 1072 1072 HOH WAT . 
E 3 HOH A 31 1076 1076 HOH WAT . 
E 3 HOH A 32 1078 1078 HOH WAT . 
E 3 HOH A 33 1081 1081 HOH WAT . 
E 3 HOH A 34 1082 1082 HOH WAT . 
E 3 HOH A 35 1083 1083 HOH WAT . 
F 3 HOH B 1 1002 1002 HOH WAT . 
F 3 HOH B 2 1003 1003 HOH WAT . 
F 3 HOH B 3 1005 1005 HOH WAT . 
F 3 HOH B 4 1007 1007 HOH WAT . 
F 3 HOH B 5 1009 1009 HOH WAT . 
F 3 HOH B 6 1010 1010 HOH WAT . 
F 3 HOH B 7 1013 1013 HOH WAT . 
F 3 HOH B 8 1014 1014 HOH WAT . 
F 3 HOH B 9 1015 1015 HOH WAT . 
F 3 HOH B 10 1016 1016 HOH WAT . 
F 3 HOH B 11 1017 1017 HOH WAT . 
F 3 HOH B 12 1021 1021 HOH WAT . 
F 3 HOH B 13 1022 1022 HOH WAT . 
F 3 HOH B 14 1028 1028 HOH WAT . 
F 3 HOH B 15 1030 1030 HOH WAT . 
F 3 HOH B 16 1033 1033 HOH WAT . 
F 3 HOH B 17 1035 1035 HOH WAT . 
F 3 HOH B 18 1038 1038 HOH WAT . 
F 3 HOH B 19 1039 1039 HOH WAT . 
F 3 HOH B 20 1040 1040 HOH WAT . 
F 3 HOH B 21 1041 1041 HOH WAT . 
F 3 HOH B 22 1042 1042 HOH WAT . 
F 3 HOH B 23 1043 1043 HOH WAT . 
F 3 HOH B 24 1045 1045 HOH WAT . 
F 3 HOH B 25 1049 1049 HOH WAT . 
F 3 HOH B 26 1051 1051 HOH WAT . 
F 3 HOH B 27 1052 1052 HOH WAT . 
F 3 HOH B 28 1053 1053 HOH WAT . 
F 3 HOH B 29 1054 1054 HOH WAT . 
F 3 HOH B 30 1055 1055 HOH WAT . 
F 3 HOH B 31 1056 1056 HOH WAT . 
F 3 HOH B 32 1057 1057 HOH WAT . 
F 3 HOH B 33 1058 1058 HOH WAT . 
F 3 HOH B 34 1060 1060 HOH WAT . 
F 3 HOH B 35 1061 1061 HOH WAT . 
F 3 HOH B 36 1062 1062 HOH WAT . 
F 3 HOH B 37 1064 1064 HOH WAT . 
F 3 HOH B 38 1065 1065 HOH WAT . 
F 3 HOH B 39 1066 1066 HOH WAT . 
F 3 HOH B 40 1067 1067 HOH WAT . 
F 3 HOH B 41 1068 1068 HOH WAT . 
F 3 HOH B 42 1069 1069 HOH WAT . 
F 3 HOH B 43 1073 1073 HOH WAT . 
F 3 HOH B 44 1074 1074 HOH WAT . 
F 3 HOH B 45 1075 1075 HOH WAT . 
F 3 HOH B 46 1079 1079 HOH WAT . 
F 3 HOH B 47 1080 1080 HOH WAT . 
F 3 HOH B 48 1085 1085 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 AIC . . . C 2 -41.425 5.588 1.406 1 68.24 ? C8 AIC 2001 B 1 
HETATM 2 C C5 AIC . . . C 2 -41.415 4.929 -0.915 1 70.3 ? C5 AIC 2001 B 1 
HETATM 3 C C6 AIC . . . C 2 -40.714 3.814 -7.828 1 67.28 ? C6 AIC 2001 B 1 
HETATM 4 N N1 AIC . . . C 2 -41.343 4.309 -4.358 1 70.51 ? N1 AIC 2001 B 1 
HETATM 5 C C2 AIC . . . C 2 -38.728 2.25 -8.006 1 67.96 ? C2 AIC 2001 B 1 
HETATM 6 N N3 AIC . . . C 2 -39.308 3.578 -5.965 1 68.87 ? N3 AIC 2001 B 1 
HETATM 7 C C4 AIC . . . C 2 -41.866 3.965 -2.017 1 70.97 ? C4 AIC 2001 B 1 
HETATM 8 C C1 AIC . . . C 2 -41.142 5.235 -7.453 1 65.69 ? C1 AIC 2001 B 1 
HETATM 9 C C3 AIC . . . C 2 -42.096 4.711 -3.337 1 71.09 ? C3 AIC 2001 B 1 
HETATM 10 C C7 AIC . . . C 2 -41.849 4.736 0.393 1 69.03 ? C7 AIC 2001 B 1 
HETATM 11 C C9 AIC . . . C 2 -40.566 6.642 1.112 1 68.01 ? C9 AIC 2001 B 1 
HETATM 12 C C10 AIC . . . C 2 -40.133 6.837 -0.197 1 68.36 ? C10 AIC 2001 B 1 
HETATM 13 C C11 AIC . . . C 2 -40.555 5.985 -1.21 1 69.03 ? C11 AIC 2001 B 1 
HETATM 14 C C12 AIC . . . C 2 -39.254 3.577 -7.44 1 68.85 ? C12 AIC 2001 B 1 
HETATM 15 C C13 AIC . . . C 2 -40.173 2.455 -5.57 1 68.03 ? C13 AIC 2001 B 1 
HETATM 16 C C14 AIC . . . C 2 -40.358 3.216 -4.263 1 68.8 ? C14 AIC 2001 B 1 
HETATM 17 C C15 AIC . . . C 2 -38.989 3.749 -4.685 1 68.87 ? C15 AIC 2001 B 1 
HETATM 18 C C16 AIC . . . C 2 -41.01 3.511 -9.298 1 64.05 ? C16 AIC 2001 B 1 
HETATM 19 N N2 AIC . . . C 2 -43.108 3.3 -1.593 1 72.08 ? N2 AIC 2001 B 1 
HETATM 20 O O1 AIC . . . C 2 -39.568 1.427 -8.419 1 68.21 ? O1 AIC 2001 B 1 
HETATM 21 O O2 AIC . . . C 2 -37.486 2.112 -8.06 1 66.79 ? O2 AIC 2001 B 1 
HETATM 22 O O3 AIC . . . C 2 -42.963 5.586 -3.425 1 70.47 ? O3 AIC 2001 B 1 
HETATM 23 O O4 AIC . . . C 2 -37.968 4.102 -4.087 1 69.19 ? O4 AIC 2001 B 1 
HETATM 24 S S1 AIC . . . C 2 -41.558 2.596 -6.756 1 69.29 ? S1 AIC 2001 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           24 
#