data_3KP3 # _model_server_result.job_id GyCEwqXGYjkUI1msO2S9XQ _model_server_result.datetime_utc '2024-11-25 07:50:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2002}' # _entry.id 3KP3 # _exptl.entry_id 3KP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KP3 _cell.length_a 108.033 _cell.length_b 108.033 _cell.length_c 49.76 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H19 N3 O4 S' _chem_comp.formula_weight 349.405 _chem_comp.id AIC _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AMPICILLIN;D(-)-ALPHA-AMINOBENZYLPENICILLIN;6-[D(-)-ALPHA-AMINOPHENYLLACETAMIDO]PENICILLANIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 AIC doub 1 n y C8 C9 AIC sing 2 n y C8 HC8 AIC sing 3 n n C5 C4 AIC sing 4 n n C5 C7 AIC sing 5 n y C5 C11 AIC doub 6 n y C6 C1 AIC sing 7 n n C6 C12 AIC sing 8 n n C6 C16 AIC sing 9 n n C6 S1 AIC sing 10 n n N1 C3 AIC sing 11 n n N1 C14 AIC sing 12 n n N1 HN1 AIC sing 13 n n C2 C12 AIC sing 14 n n C2 O1 AIC doub 15 n n C2 O2 AIC sing 16 n n N3 C12 AIC sing 17 n n N3 C13 AIC sing 18 n n N3 C15 AIC sing 19 n n C4 C3 AIC sing 20 n n C4 N2 AIC sing 21 n n C4 HC4 AIC sing 22 n n C1 HC1 AIC sing 23 n n C1 HC2 AIC sing 24 n n C1 HC3 AIC sing 25 n n C3 O3 AIC doub 26 n n C7 HC7 AIC sing 27 n n C9 C10 AIC doub 28 n y C9 HC9 AIC sing 29 n n C10 C11 AIC sing 30 n y C10 HC01 AIC sing 31 n n C11 HC11 AIC sing 32 n n C12 HC21 AIC sing 33 n n C13 C14 AIC sing 34 n n C13 S1 AIC sing 35 n n C13 HC31 AIC sing 36 n n C14 C15 AIC sing 37 n n C14 HC41 AIC sing 38 n n C15 O4 AIC doub 39 n n C16 H161 AIC sing 40 n n C16 H162 AIC sing 41 n n C16 H163 AIC sing 42 n n N2 HN21 AIC sing 43 n n N2 HN22 AIC sing 44 n n O2 HO2 AIC sing 45 n n # _atom_sites.entry_id 3KP3 _atom_sites.fract_transf_matrix[1][1] 0.009256 _atom_sites.fract_transf_matrix[1][2] 0.005344 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020096 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AIC B 1 2001 2001 AIC DRG . D 2 AIC B 1 2002 2002 AIC DRG . E 3 HOH A 1 1001 1001 HOH WAT . E 3 HOH A 2 1004 1004 HOH WAT . E 3 HOH A 3 1006 1006 HOH WAT . E 3 HOH A 4 1008 1008 HOH WAT . E 3 HOH A 5 1011 1011 HOH WAT . E 3 HOH A 6 1012 1012 HOH WAT . E 3 HOH A 7 1018 1018 HOH WAT . E 3 HOH A 8 1019 1019 HOH WAT . E 3 HOH A 9 1020 1020 HOH WAT . E 3 HOH A 10 1023 1023 HOH WAT . E 3 HOH A 11 1024 1024 HOH WAT . E 3 HOH A 12 1025 1025 HOH WAT . E 3 HOH A 13 1026 1026 HOH WAT . E 3 HOH A 14 1027 1027 HOH WAT . E 3 HOH A 15 1029 1029 HOH WAT . E 3 HOH A 16 1031 1031 HOH WAT . E 3 HOH A 17 1032 1032 HOH WAT . E 3 HOH A 18 1034 1034 HOH WAT . E 3 HOH A 19 1036 1036 HOH WAT . E 3 HOH A 20 1037 1037 HOH WAT . E 3 HOH A 21 1044 1044 HOH WAT . E 3 HOH A 22 1046 1046 HOH WAT . E 3 HOH A 23 1047 1047 HOH WAT . E 3 HOH A 24 1048 1048 HOH WAT . E 3 HOH A 25 1050 1050 HOH WAT . E 3 HOH A 26 1059 1059 HOH WAT . E 3 HOH A 27 1063 1063 HOH WAT . E 3 HOH A 28 1070 1070 HOH WAT . E 3 HOH A 29 1071 1071 HOH WAT . E 3 HOH A 30 1072 1072 HOH WAT . E 3 HOH A 31 1076 1076 HOH WAT . E 3 HOH A 32 1078 1078 HOH WAT . E 3 HOH A 33 1081 1081 HOH WAT . E 3 HOH A 34 1082 1082 HOH WAT . E 3 HOH A 35 1083 1083 HOH WAT . F 3 HOH B 1 1002 1002 HOH WAT . F 3 HOH B 2 1003 1003 HOH WAT . F 3 HOH B 3 1005 1005 HOH WAT . F 3 HOH B 4 1007 1007 HOH WAT . F 3 HOH B 5 1009 1009 HOH WAT . F 3 HOH B 6 1010 1010 HOH WAT . F 3 HOH B 7 1013 1013 HOH WAT . F 3 HOH B 8 1014 1014 HOH WAT . F 3 HOH B 9 1015 1015 HOH WAT . F 3 HOH B 10 1016 1016 HOH WAT . F 3 HOH B 11 1017 1017 HOH WAT . F 3 HOH B 12 1021 1021 HOH WAT . F 3 HOH B 13 1022 1022 HOH WAT . F 3 HOH B 14 1028 1028 HOH WAT . F 3 HOH B 15 1030 1030 HOH WAT . F 3 HOH B 16 1033 1033 HOH WAT . F 3 HOH B 17 1035 1035 HOH WAT . F 3 HOH B 18 1038 1038 HOH WAT . F 3 HOH B 19 1039 1039 HOH WAT . F 3 HOH B 20 1040 1040 HOH WAT . F 3 HOH B 21 1041 1041 HOH WAT . F 3 HOH B 22 1042 1042 HOH WAT . F 3 HOH B 23 1043 1043 HOH WAT . F 3 HOH B 24 1045 1045 HOH WAT . F 3 HOH B 25 1049 1049 HOH WAT . F 3 HOH B 26 1051 1051 HOH WAT . F 3 HOH B 27 1052 1052 HOH WAT . F 3 HOH B 28 1053 1053 HOH WAT . F 3 HOH B 29 1054 1054 HOH WAT . F 3 HOH B 30 1055 1055 HOH WAT . F 3 HOH B 31 1056 1056 HOH WAT . F 3 HOH B 32 1057 1057 HOH WAT . F 3 HOH B 33 1058 1058 HOH WAT . F 3 HOH B 34 1060 1060 HOH WAT . F 3 HOH B 35 1061 1061 HOH WAT . F 3 HOH B 36 1062 1062 HOH WAT . F 3 HOH B 37 1064 1064 HOH WAT . F 3 HOH B 38 1065 1065 HOH WAT . F 3 HOH B 39 1066 1066 HOH WAT . F 3 HOH B 40 1067 1067 HOH WAT . F 3 HOH B 41 1068 1068 HOH WAT . F 3 HOH B 42 1069 1069 HOH WAT . F 3 HOH B 43 1073 1073 HOH WAT . F 3 HOH B 44 1074 1074 HOH WAT . F 3 HOH B 45 1075 1075 HOH WAT . F 3 HOH B 46 1079 1079 HOH WAT . F 3 HOH B 47 1080 1080 HOH WAT . F 3 HOH B 48 1085 1085 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 AIC . . . D 2 -59.463 0.517 2.868 1 70.74 ? C8 AIC 2002 B 1 HETATM 2 C C5 AIC . . . D 2 -60.961 -0.476 1.263 1 72.24 ? C5 AIC 2002 B 1 HETATM 3 C C6 AIC . . . D 2 -60.178 4.244 -2.264 1 79.3 ? C6 AIC 2002 B 1 HETATM 4 N N1 AIC . . . D 2 -60.731 0.029 -2.332 1 78.44 ? N1 AIC 2002 B 1 HETATM 5 C C2 AIC . . . D 2 -60.446 4.566 -4.777 1 80.08 ? C2 AIC 2002 B 1 HETATM 6 N N3 AIC . . . D 2 -60.934 2.339 -3.703 1 79.05 ? N3 AIC 2002 B 1 HETATM 7 C C4 AIC . . . D 2 -61.671 -0.388 -0.089 1 73.96 ? C4 AIC 2002 B 1 HETATM 8 C C1 AIC . . . D 2 -58.81 4.797 -1.86 1 77.72 ? C1 AIC 2002 B 1 HETATM 9 C C3 AIC . . . D 2 -60.564 -0.535 -1.136 1 76.51 ? C3 AIC 2002 B 1 HETATM 10 C C7 AIC . . . D 2 -60.267 0.63 1.738 1 71.81 ? C7 AIC 2002 B 1 HETATM 11 C C9 AIC . . . D 2 -59.356 -0.703 3.523 1 69.72 ? C9 AIC 2002 B 1 HETATM 12 C C10 AIC . . . D 2 -60.059 -1.809 3.054 1 68.51 ? C10 AIC 2002 B 1 HETATM 13 C C11 AIC . . . D 2 -60.862 -1.696 1.925 1 70.03 ? C11 AIC 2002 B 1 HETATM 14 C C12 AIC . . . D 2 -60.128 3.583 -3.647 1 80.03 ? C12 AIC 2002 B 1 HETATM 15 C C13 AIC . . . D 2 -61.802 2.295 -2.514 1 78.73 ? C13 AIC 2002 B 1 HETATM 16 C C14 AIC . . . D 2 -61.908 0.798 -2.765 1 78.46 ? C14 AIC 2002 B 1 HETATM 17 C C15 AIC . . . D 2 -61.598 1.294 -4.175 1 78.85 ? C15 AIC 2002 B 1 HETATM 18 C C16 AIC . . . D 2 -61.251 5.331 -2.18 1 78.61 ? C16 AIC 2002 B 1 HETATM 19 N N2 AIC . . . D 2 -62.34 0.917 -0.193 1 74.06 ? N2 AIC 2002 B 1 HETATM 20 O O1 AIC . . . D 2 -59.47 5.073 -5.371 1 79.97 ? O1 AIC 2002 B 1 HETATM 21 O O2 AIC . . . D 2 -61.651 4.798 -5.021 1 79.34 ? O2 AIC 2002 B 1 HETATM 22 O O3 AIC . . . D 2 -59.551 -1.163 -0.837 1 76.72 ? O3 AIC 2002 B 1 HETATM 23 O O4 AIC . . . D 2 -61.839 0.87 -5.316 1 80.17 ? O4 AIC 2002 B 1 HETATM 24 S S1 AIC . . . D 2 -60.656 2.837 -1.2 1 80.72 ? S1 AIC 2002 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 24 #