data_3KP4 # _model_server_result.job_id kqNAWwd6azVsb2MdEiT0TA _model_server_result.datetime_utc '2024-11-24 19:04:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2002}' # _entry.id 3KP4 # _exptl.entry_id 3KP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.416 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description methicillin _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KP4 _cell.length_a 107.547 _cell.length_b 107.547 _cell.length_c 49.406 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H20 N2 O6 S' _chem_comp.formula_weight 380.416 _chem_comp.id MII _chem_comp.mon_nstd_flag . _chem_comp.name methicillin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O MII doub 224 n n C CA MII sing 225 n n C NAX MII sing 226 n n N CA MII sing 227 n n N CAQ MII sing 228 n n CA CB MII sing 229 n n CB SAO MII sing 230 n n CB NAX MII sing 231 n n CAA OAM MII sing 232 n n CAB OAN MII sing 233 n n CAC CAY MII sing 234 n n CAD CAY MII sing 235 n n OAE CAP MII doub 236 n n OAF CAQ MII doub 237 n n OAH CAP MII sing 238 n n CAI CAJ MII doub 239 n y CAI CAK MII sing 240 n y CAJ CAS MII sing 241 n y CAK CAT MII doub 242 n y OAM CAS MII sing 243 n n OAN CAT MII sing 244 n n SAO CAY MII sing 245 n n CAP CAW MII sing 246 n n CAQ CAU MII sing 247 n n CAS CAU MII doub 248 n y CAT CAU MII sing 249 n y CAW NAX MII sing 250 n n CAW CAY MII sing 251 n n N HN MII sing 252 n n CA HA MII sing 253 n n CB HB MII sing 254 n n CAA HAA MII sing 255 n n CAA HAAA MII sing 256 n n CAA HAAB MII sing 257 n n CAB HAB MII sing 258 n n CAB HABA MII sing 259 n n CAB HABB MII sing 260 n n CAC HAC MII sing 261 n n CAC HACA MII sing 262 n n CAC HACB MII sing 263 n n CAD HAD MII sing 264 n n CAD HADA MII sing 265 n n CAD HADB MII sing 266 n n OAH HOAH MII sing 267 n n CAI HAI MII sing 268 n n CAJ HAJ MII sing 269 n n CAK HAK MII sing 270 n n CAW HAW MII sing 271 n n # _atom_sites.entry_id 3KP4 _atom_sites.fract_transf_matrix[1][1] 0.009298 _atom_sites.fract_transf_matrix[1][2] 0.005368 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MII A 1 2001 2001 MII DRG . D 2 MII B 1 2002 2002 MII DRG . E 3 HOH A 1 1005 1005 HOH WAT . E 3 HOH A 2 1006 1006 HOH WAT . E 3 HOH A 3 1011 1011 HOH WAT . E 3 HOH A 4 1012 1012 HOH WAT . E 3 HOH A 5 1014 1014 HOH WAT . E 3 HOH A 6 1015 1015 HOH WAT . E 3 HOH A 7 1017 1017 HOH WAT . E 3 HOH A 8 1021 1021 HOH WAT . E 3 HOH A 9 1023 1023 HOH WAT . E 3 HOH A 10 1024 1024 HOH WAT . E 3 HOH A 11 1025 1025 HOH WAT . E 3 HOH A 12 1027 1027 HOH WAT . E 3 HOH A 13 1028 1028 HOH WAT . E 3 HOH A 14 1030 1030 HOH WAT . E 3 HOH A 15 1032 1032 HOH WAT . E 3 HOH A 16 1035 1035 HOH WAT . E 3 HOH A 17 1036 1036 HOH WAT . E 3 HOH A 18 1040 1040 HOH WAT . E 3 HOH A 19 1041 1041 HOH WAT . E 3 HOH A 20 1045 1045 HOH WAT . E 3 HOH A 21 1046 1046 HOH WAT . E 3 HOH A 22 1047 1047 HOH WAT . E 3 HOH A 23 1052 1052 HOH WAT . E 3 HOH A 24 1053 1053 HOH WAT . E 3 HOH A 25 1054 1054 HOH WAT . E 3 HOH A 26 1055 1055 HOH WAT . E 3 HOH A 27 1056 1056 HOH WAT . E 3 HOH A 28 1057 1057 HOH WAT . E 3 HOH A 29 1058 1058 HOH WAT . E 3 HOH A 30 1064 1064 HOH WAT . E 3 HOH A 31 1065 1065 HOH WAT . E 3 HOH A 32 1066 1066 HOH WAT . E 3 HOH A 33 1068 1068 HOH WAT . E 3 HOH A 34 1069 1069 HOH WAT . E 3 HOH A 35 1070 1070 HOH WAT . E 3 HOH A 36 1072 1072 HOH WAT . E 3 HOH A 37 1073 1073 HOH WAT . E 3 HOH A 38 1077 1077 HOH WAT . E 3 HOH A 39 1079 1079 HOH WAT . E 3 HOH A 40 1080 1080 HOH WAT . E 3 HOH A 41 1082 1082 HOH WAT . E 3 HOH A 42 1084 1084 HOH WAT . E 3 HOH A 43 1085 1085 HOH WAT . E 3 HOH A 44 1086 1086 HOH WAT . E 3 HOH A 45 1087 1087 HOH WAT . E 3 HOH A 46 1090 1090 HOH WAT . E 3 HOH A 47 1093 1093 HOH WAT . E 3 HOH A 48 1095 1095 HOH WAT . E 3 HOH A 49 1100 1100 HOH WAT . E 3 HOH A 50 1103 1103 HOH WAT . E 3 HOH A 51 1104 1104 HOH WAT . E 3 HOH A 52 1105 1105 HOH WAT . E 3 HOH A 53 1106 1106 HOH WAT . E 3 HOH A 54 1109 1109 HOH WAT . E 3 HOH A 55 1111 1111 HOH WAT . E 3 HOH A 56 1113 1113 HOH WAT . E 3 HOH A 57 1116 1116 HOH WAT . E 3 HOH A 58 1117 1117 HOH WAT . E 3 HOH A 59 1118 1118 HOH WAT . E 3 HOH A 60 1119 1119 HOH WAT . E 3 HOH A 61 1121 1121 HOH WAT . E 3 HOH A 62 1122 1122 HOH WAT . E 3 HOH A 63 1123 1123 HOH WAT . E 3 HOH A 64 1125 1125 HOH WAT . E 3 HOH A 65 1126 1126 HOH WAT . F 3 HOH B 1 1001 1001 HOH WAT . F 3 HOH B 2 1002 1002 HOH WAT . F 3 HOH B 3 1003 1003 HOH WAT . F 3 HOH B 4 1004 1004 HOH WAT . F 3 HOH B 5 1007 1007 HOH WAT . F 3 HOH B 6 1008 1008 HOH WAT . F 3 HOH B 7 1009 1009 HOH WAT . F 3 HOH B 8 1010 1010 HOH WAT . F 3 HOH B 9 1013 1013 HOH WAT . F 3 HOH B 10 1016 1016 HOH WAT . F 3 HOH B 11 1018 1018 HOH WAT . F 3 HOH B 12 1019 1019 HOH WAT . F 3 HOH B 13 1020 1020 HOH WAT . F 3 HOH B 14 1022 1022 HOH WAT . F 3 HOH B 15 1026 1026 HOH WAT . F 3 HOH B 16 1029 1029 HOH WAT . F 3 HOH B 17 1031 1031 HOH WAT . F 3 HOH B 18 1033 1033 HOH WAT . F 3 HOH B 19 1034 1034 HOH WAT . F 3 HOH B 20 1037 1037 HOH WAT . F 3 HOH B 21 1038 1038 HOH WAT . F 3 HOH B 22 1039 1039 HOH WAT . F 3 HOH B 23 1042 1042 HOH WAT . F 3 HOH B 24 1043 1043 HOH WAT . F 3 HOH B 25 1044 1044 HOH WAT . F 3 HOH B 26 1048 1048 HOH WAT . F 3 HOH B 27 1049 1049 HOH WAT . F 3 HOH B 28 1050 1050 HOH WAT . F 3 HOH B 29 1051 1051 HOH WAT . F 3 HOH B 30 1059 1059 HOH WAT . F 3 HOH B 31 1060 1060 HOH WAT . F 3 HOH B 32 1061 1061 HOH WAT . F 3 HOH B 33 1062 1062 HOH WAT . F 3 HOH B 34 1063 1063 HOH WAT . F 3 HOH B 35 1067 1067 HOH WAT . F 3 HOH B 36 1071 1071 HOH WAT . F 3 HOH B 37 1074 1074 HOH WAT . F 3 HOH B 38 1075 1075 HOH WAT . F 3 HOH B 39 1076 1076 HOH WAT . F 3 HOH B 40 1078 1078 HOH WAT . F 3 HOH B 41 1081 1081 HOH WAT . F 3 HOH B 42 1083 1083 HOH WAT . F 3 HOH B 43 1088 1088 HOH WAT . F 3 HOH B 44 1089 1089 HOH WAT . F 3 HOH B 45 1091 1091 HOH WAT . F 3 HOH B 46 1092 1092 HOH WAT . F 3 HOH B 47 1094 1094 HOH WAT . F 3 HOH B 48 1096 1096 HOH WAT . F 3 HOH B 49 1097 1097 HOH WAT . F 3 HOH B 50 1098 1098 HOH WAT . F 3 HOH B 51 1099 1099 HOH WAT . F 3 HOH B 52 1101 1101 HOH WAT . F 3 HOH B 53 1102 1102 HOH WAT . F 3 HOH B 54 1107 1107 HOH WAT . F 3 HOH B 55 1108 1108 HOH WAT . F 3 HOH B 56 1110 1110 HOH WAT . F 3 HOH B 57 1112 1112 HOH WAT . F 3 HOH B 58 1114 1114 HOH WAT . F 3 HOH B 59 1115 1115 HOH WAT . F 3 HOH B 60 1120 1120 HOH WAT . F 3 HOH B 61 1124 1124 HOH WAT . F 3 HOH B 62 1127 1127 HOH WAT . F 3 HOH B 63 1128 1128 HOH WAT . F 3 HOH B 64 1129 1129 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C MII . . . D 2 -35.145 -48.414 -5.399 1 68.96 ? C MII 2002 B 1 HETATM 2 N N MII . . . D 2 -34.007 -50.437 -4.485 1 67.38 ? N MII 2002 B 1 HETATM 3 O O MII . . . D 2 -35.666 -47.601 -4.645 1 67.69 ? O MII 2002 B 1 HETATM 4 C CA MII . . . D 2 -33.854 -49.242 -5.33 1 69.36 ? CA MII 2002 B 1 HETATM 5 C CB MII . . . D 2 -34.09 -49.402 -6.829 1 68.51 ? CB MII 2002 B 1 HETATM 6 C CAA MII . . . D 2 -30.007 -52.489 -1.346 1 67.27 ? CAA MII 2002 B 1 HETATM 7 C CAB MII . . . D 2 -36.081 -53.548 -4.512 1 68.45 ? CAB MII 2002 B 1 HETATM 8 C CAC MII . . . D 2 -37.2 -51.369 -7.253 1 70.1 ? CAC MII 2002 B 1 HETATM 9 C CAD MII . . . D 2 -36.222 -51.021 -9.568 1 68.35 ? CAD MII 2002 B 1 HETATM 10 O OAE MII . . . D 2 -36.138 -48.061 -9.999 1 69.99 ? OAE MII 2002 B 1 HETATM 11 O OAF MII . . . D 2 -31.848 -50.37 -3.821 1 66.7 ? OAF MII 2002 B 1 HETATM 12 O OAH MII . . . D 2 -34.209 -48.257 -8.885 1 68.93 ? OAH MII 2002 B 1 HETATM 13 C CAI MII . . . D 2 -33.591 -54.43 -1.41 1 67.23 ? CAI MII 2002 B 1 HETATM 14 C CAJ MII . . . D 2 -32.438 -53.668 -1.236 1 68.52 ? CAJ MII 2002 B 1 HETATM 15 C CAK MII . . . D 2 -34.555 -54.034 -2.333 1 68.2 ? CAK MII 2002 B 1 HETATM 16 O OAM MII . . . D 2 -31.141 -51.735 -1.792 1 68.99 ? OAM MII 2002 B 1 HETATM 17 O OAN MII . . . D 2 -35.308 -52.465 -3.984 1 67.8 ? OAN MII 2002 B 1 HETATM 18 S SAO MII . . . D 2 -34.47 -51.066 -7.487 1 70.82 ? SAO MII 2002 B 1 HETATM 19 C CAP MII . . . D 2 -35.451 -48.406 -9.012 1 69.37 ? CAP MII 2002 B 1 HETATM 20 C CAQ MII . . . D 2 -32.967 -50.885 -3.785 1 68.68 ? CAQ MII 2002 B 1 HETATM 21 C CAS MII . . . D 2 -32.248 -52.514 -1.987 1 69.05 ? CAS MII 2002 B 1 HETATM 22 C CAT MII . . . D 2 -34.363 -52.881 -3.089 1 68.11 ? CAT MII 2002 B 1 HETATM 23 C CAU MII . . . D 2 -33.209 -52.128 -2.917 1 68.74 ? CAU MII 2002 B 1 HETATM 24 C CAW MII . . . D 2 -36.185 -49.119 -7.874 1 69.85 ? CAW MII 2002 B 1 HETATM 25 N NAX MII . . . D 2 -35.453 -48.892 -6.607 1 68.95 ? NAX MII 2002 B 1 HETATM 26 C CAY MII . . . D 2 -36.144 -50.636 -8.086 1 70.7 ? CAY MII 2002 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #