data_3KP9 # _model_server_result.job_id EnZaIgI33OO6Grlgr76FrQ _model_server_result.datetime_utc '2024-10-12 08:25:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3KP9 # _exptl.entry_id 3KP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 863.343 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KP9 _cell.length_a 136.942 _cell.length_b 136.942 _cell.length_c 68.48 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 130 A CYS 130 1_555 A SG CYS 133 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 A SG CYS 231 A CYS 231 1_555 A SG CYS 244 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A ND1 HIS 195 A HIS 195 1_555 D HG HG . A HG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc2 A SG CYS 212 A CYS 212 1_555 C HG HG . A HG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # _atom_sites.entry_id 3KP9 _atom_sites.fract_transf_matrix[1][1] 0.007302 _atom_sites.fract_transf_matrix[1][2] 0.004216 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008432 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U10 A 1 501 501 U10 U10 . C 3 HG A 1 601 601 HG HG . D 3 HG A 1 602 602 HG HG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . B 2 41.01 69 17.813 1 105.12 ? C1 U10 501 A 1 HETATM 2 C C2 U10 . . . B 2 40.933 70.222 18.502 1 104.8 ? C2 U10 501 A 1 HETATM 3 C C3 U10 . . . B 2 42.076 70.812 19.052 1 104.5 ? C3 U10 501 A 1 HETATM 4 C C4 U10 . . . B 2 43.307 70.199 18.815 1 103.98 ? C4 U10 501 A 1 HETATM 5 C C5 U10 . . . B 2 43.379 68.992 18.111 1 103.39 ? C5 U10 501 A 1 HETATM 6 C C6 U10 . . . B 2 42.249 68.36 17.592 1 103.79 ? C6 U10 501 A 1 HETATM 7 C C1M U10 . . . B 2 39.704 68.425 17.317 1 106.64 ? C1M U10 501 A 1 HETATM 8 C C3M U10 . . . B 2 41.561 72.63 20.464 1 104.58 ? C3M U10 501 A 1 HETATM 9 C C4M U10 . . . B 2 44.75 71.199 20.356 1 104.12 ? C4M U10 501 A 1 HETATM 10 C C7 U10 . . . B 2 42.492 67.303 16.506 1 102.63 ? C7 U10 501 A 1 HETATM 11 C C8 U10 . . . B 2 41.449 66.212 16.344 1 102.11 ? C8 U10 501 A 1 HETATM 12 C C9 U10 . . . B 2 41.344 65.026 17.225 1 102.9 ? C9 U10 501 A 1 HETATM 13 C C10 U10 . . . B 2 42.123 63.784 16.925 1 102.29 ? C10 U10 501 A 1 HETATM 14 C C11 U10 . . . B 2 40.442 65.003 18.45 1 104.35 ? C11 U10 501 A 1 HETATM 15 C C12 U10 . . . B 2 38.989 64.586 18.139 1 104.95 ? C12 U10 501 A 1 HETATM 16 C C13 U10 . . . B 2 38.458 63.585 19.153 1 103.91 ? C13 U10 501 A 1 HETATM 17 C C14 U10 . . . B 2 39.131 62.289 19.315 1 103.4 ? C14 U10 501 A 1 HETATM 18 C C15 U10 . . . B 2 39.199 61.394 18.123 1 104.43 ? C15 U10 501 A 1 HETATM 19 C C16 U10 . . . B 2 39.749 61.876 20.633 1 103.66 ? C16 U10 501 A 1 HETATM 20 C C17 U10 . . . B 2 39.74 60.36 20.872 1 104.28 ? C17 U10 501 A 1 HETATM 21 C C18 U10 . . . B 2 39.18 60.031 22.246 1 104.85 ? C18 U10 501 A 1 HETATM 22 C C19 U10 . . . B 2 39.429 58.717 22.864 1 105.2 ? C19 U10 501 A 1 HETATM 23 C C20 U10 . . . B 2 38.44 57.62 22.646 1 105.32 ? C20 U10 501 A 1 HETATM 24 C C21 U10 . . . B 2 40.666 58.455 23.697 1 105.93 ? C21 U10 501 A 1 HETATM 25 C C22 U10 . . . B 2 40.294 57.99 25.101 1 107.24 ? C22 U10 501 A 1 HETATM 26 C C23 U10 . . . B 2 40.925 58.911 26.127 1 109.79 ? C23 U10 501 A 1 HETATM 27 C C24 U10 . . . B 2 41.677 58.401 27.297 1 111.15 ? C24 U10 501 A 1 HETATM 28 C C25 U10 . . . B 2 42.998 57.698 27.11 1 111.34 ? C25 U10 501 A 1 HETATM 29 C C26 U10 . . . B 2 41.122 58.58 28.696 1 111.07 ? C26 U10 501 A 1 HETATM 30 O O2 U10 . . . B 2 40.055 71.013 18.129 1 104.15 ? O2 U10 501 A 1 HETATM 31 O O3 U10 . . . B 2 41.943 71.292 20.196 1 104.82 ? O3 U10 501 A 1 HETATM 32 O O4 U10 . . . B 2 44.354 70.828 19.047 1 104.47 ? O4 U10 501 A 1 HETATM 33 O O5 U10 . . . B 2 44.48 68.61 17.734 1 103.41 ? O5 U10 501 A 1 # _model_server_stats.io_time_ms 107 _model_server_stats.parse_time_ms 80 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #