data_3KPE # _model_server_result.job_id LTWcPaMZD7JZuR5IuTjl_g _model_server_result.datetime_utc '2024-11-07 13:30:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kpe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":210}' # _entry.id 3KPE # _exptl.entry_id 3KPE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KPE _cell.length_a 63.248 _cell.length_b 63.248 _cell.length_c 63.248 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KPE _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z+1/2,-x+1/2,-y 0 0 1 -1 0 0 0 -1 0 31.624 31.624 0 3 'crystal symmetry operation' 12_554 -y+1/2,-z,x-1/2 0 -1 0 0 0 -1 1 0 0 31.624 0 -31.624 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 205 n n O1 HO1 PG4 sing 206 n n C1 C2 PG4 sing 207 n n C1 H11 PG4 sing 208 n n C1 H12 PG4 sing 209 n n C2 O2 PG4 sing 210 n n C2 H21 PG4 sing 211 n n C2 H22 PG4 sing 212 n n O2 C3 PG4 sing 213 n n C3 C4 PG4 sing 214 n n C3 H31 PG4 sing 215 n n C3 H32 PG4 sing 216 n n C4 O3 PG4 sing 217 n n C4 H41 PG4 sing 218 n n C4 H42 PG4 sing 219 n n O3 C5 PG4 sing 220 n n C5 C6 PG4 sing 221 n n C5 H51 PG4 sing 222 n n C5 H52 PG4 sing 223 n n C6 O4 PG4 sing 224 n n C6 H61 PG4 sing 225 n n C6 H62 PG4 sing 226 n n O4 C7 PG4 sing 227 n n C7 C8 PG4 sing 228 n n C7 H71 PG4 sing 229 n n C7 H72 PG4 sing 230 n n C8 O5 PG4 sing 231 n n C8 H81 PG4 sing 232 n n C8 H82 PG4 sing 233 n n O5 HO5 PG4 sing 234 n n # _atom_sites.entry_id 3KPE _atom_sites.fract_transf_matrix[1][1] 0.015811 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TM3 A 1 1 1 TM3 TTZ . D 4 PG4 A 1 210 1 PG4 PG4 . E 5 HOH A 1 2 2 HOH HOH . E 5 HOH A 2 3 3 HOH HOH . E 5 HOH A 3 6 6 HOH HOH . E 5 HOH A 4 9 9 HOH HOH . E 5 HOH A 5 10 10 HOH HOH . E 5 HOH A 6 12 12 HOH HOH . E 5 HOH A 7 13 13 HOH HOH . E 5 HOH A 8 16 16 HOH HOH . E 5 HOH A 9 17 17 HOH HOH . E 5 HOH A 10 22 22 HOH HOH . E 5 HOH A 11 24 24 HOH HOH . E 5 HOH A 12 28 28 HOH HOH . E 5 HOH A 13 32 32 HOH HOH . E 5 HOH A 14 34 34 HOH HOH . E 5 HOH A 15 37 37 HOH HOH . E 5 HOH A 16 211 1 HOH HOH . F 5 HOH B 1 4 4 HOH HOH . F 5 HOH B 2 5 5 HOH HOH . F 5 HOH B 3 7 7 HOH HOH . F 5 HOH B 4 8 8 HOH HOH . F 5 HOH B 5 11 11 HOH HOH . F 5 HOH B 6 14 14 HOH HOH . F 5 HOH B 7 15 15 HOH HOH . F 5 HOH B 8 18 18 HOH HOH . F 5 HOH B 9 19 19 HOH HOH . F 5 HOH B 10 20 20 HOH HOH . F 5 HOH B 11 21 21 HOH HOH . F 5 HOH B 12 23 23 HOH HOH . F 5 HOH B 13 25 25 HOH HOH . F 5 HOH B 14 26 26 HOH HOH . F 5 HOH B 15 27 27 HOH HOH . F 5 HOH B 16 29 29 HOH HOH . F 5 HOH B 17 30 30 HOH HOH . F 5 HOH B 18 31 31 HOH HOH . F 5 HOH B 19 33 33 HOH HOH . F 5 HOH B 20 35 35 HOH HOH . F 5 HOH B 21 36 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . D 4 29.036 -10.495 -3.544 1 49.66 ? O1 PG4 210 A 1 HETATM 2 C C1 PG4 . . . D 4 27.634 -10.689 -3.779 1 45.9 ? C1 PG4 210 A 1 HETATM 3 C C2 PG4 . . . D 4 26.888 -9.375 -3.614 1 45.07 ? C2 PG4 210 A 1 HETATM 4 O O2 PG4 . . . D 4 25.849 -9.502 -2.649 1 44 ? O2 PG4 210 A 1 HETATM 5 C C3 PG4 . . . D 4 26.36 -9.542 -1.326 1 42.77 ? C3 PG4 210 A 1 HETATM 6 C C4 PG4 . . . D 4 25.267 -9.365 -0.281 1 44.68 ? C4 PG4 210 A 1 HETATM 7 O O3 PG4 . . . D 4 25.819 -9.125 1.018 1 47.34 ? O3 PG4 210 A 1 HETATM 8 C C5 PG4 . . . D 4 26.893 -9.995 1.368 1 48.88 ? C5 PG4 210 A 1 HETATM 9 C C6 PG4 . . . D 4 27.164 -10.013 2.865 1 51.19 ? C6 PG4 210 A 1 HETATM 10 O O4 PG4 . . . D 4 28.335 -10.817 3.081 1 54.02 ? O4 PG4 210 A 1 HETATM 11 C C7 PG4 . . . D 4 28.104 -12.228 3.212 1 56.03 ? C7 PG4 210 A 1 HETATM 12 C C8 PG4 . . . D 4 29.006 -13.001 2.25 1 57.03 ? C8 PG4 210 A 1 HETATM 13 O O5 PG4 . . . D 4 29.769 -13.982 2.971 1 59.67 ? O5 PG4 210 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 375 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 13 #