data_3KPF
#
_model_server_result.job_id            AJezHJyoLKhy3bXiul_qqg 
_model_server_result.datetime_utc      '2024-11-18 17:39:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kpf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":480}' 
#
_entry.id    3KPF 
#
_exptl.entry_id    3KPF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.044 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3KPF 
_cell.length_a            138.606 
_cell.length_b            138.606 
_cell.length_c            189.471 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KPF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,K 1 1 
B,C,H,I,J,L 2 1 
A,B,C,D,E,F,G,H,I,J,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 J N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG B 600 NAG 
2 n C NAG 2 C 2 NAG B 601 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 457 A CYS 457 1_555 A SG CYS 463 A CYS 463 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.2 ? 
covale ? covale1 A ND2 ASN 77 A ASN 77 1_555 E C1 NAG . A NAG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale2 B ND2 ASN 77 B ASN 77 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
#
_chem_comp.formula           'C2 H3 O2 -1' 
_chem_comp.formula_weight    59.044 
_chem_comp.id                ACT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACT doub 1 n n 
C OXT ACT sing 2 n n 
C CH3 ACT sing 3 n n 
CH3 H1 ACT sing 4 n n 
CH3 H2 ACT sing 5 n n 
CH3 H3 ACT sing 6 n n 
#
_atom_sites.entry_id                     3KPF 
_atom_sites.fract_transf_matrix[1][1]    0.007215 
_atom_sites.fract_transf_matrix[1][2]    0.004165 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008331 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005278 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 FAD A 1 500 500 FAD FAD . 
E 4 NAG A 1 600 600 NAG NAG . 
F 5 CL A 1 479 1 CL CL . 
G 6 ACT A 1 480 3 ACT ACT . 
H 3 FAD B 1 500 500 FAD FAD . 
I 7 SO4 B 1 479 2 SO4 SO4 . 
J 6 ACT B 1 480 4 ACT ACT . 
K 8 HOH A 1 481 1 HOH HOH . 
K 8 HOH A 2 482 2 HOH HOH . 
K 8 HOH A 3 483 3 HOH HOH . 
K 8 HOH A 4 484 4 HOH HOH . 
K 8 HOH A 5 485 7 HOH HOH . 
K 8 HOH A 6 486 9 HOH HOH . 
K 8 HOH A 7 487 12 HOH HOH . 
K 8 HOH A 8 488 19 HOH HOH . 
K 8 HOH A 9 489 20 HOH HOH . 
K 8 HOH A 10 490 22 HOH HOH . 
K 8 HOH A 11 491 23 HOH HOH . 
K 8 HOH A 12 492 24 HOH HOH . 
K 8 HOH A 13 493 26 HOH HOH . 
K 8 HOH A 14 494 28 HOH HOH . 
K 8 HOH A 15 495 29 HOH HOH . 
K 8 HOH A 16 496 34 HOH HOH . 
K 8 HOH A 17 497 35 HOH HOH . 
K 8 HOH A 18 498 39 HOH HOH . 
K 8 HOH A 19 499 43 HOH HOH . 
K 8 HOH A 20 501 45 HOH HOH . 
K 8 HOH A 21 502 46 HOH HOH . 
K 8 HOH A 22 503 48 HOH HOH . 
K 8 HOH A 23 504 52 HOH HOH . 
K 8 HOH A 24 505 53 HOH HOH . 
K 8 HOH A 25 506 54 HOH HOH . 
K 8 HOH A 26 507 55 HOH HOH . 
K 8 HOH A 27 508 56 HOH HOH . 
K 8 HOH A 28 509 57 HOH HOH . 
K 8 HOH A 29 510 60 HOH HOH . 
K 8 HOH A 30 511 63 HOH HOH . 
K 8 HOH A 31 512 66 HOH HOH . 
K 8 HOH A 32 513 72 HOH HOH . 
K 8 HOH A 33 514 73 HOH HOH . 
K 8 HOH A 34 515 74 HOH HOH . 
K 8 HOH A 35 516 75 HOH HOH . 
K 8 HOH A 36 517 76 HOH HOH . 
K 8 HOH A 37 518 78 HOH HOH . 
K 8 HOH A 38 519 79 HOH HOH . 
K 8 HOH A 39 520 80 HOH HOH . 
K 8 HOH A 40 521 81 HOH HOH . 
K 8 HOH A 41 522 82 HOH HOH . 
K 8 HOH A 42 523 84 HOH HOH . 
K 8 HOH A 43 524 86 HOH HOH . 
K 8 HOH A 44 525 88 HOH HOH . 
K 8 HOH A 45 526 90 HOH HOH . 
K 8 HOH A 46 527 91 HOH HOH . 
K 8 HOH A 47 528 92 HOH HOH . 
K 8 HOH A 48 529 93 HOH HOH . 
K 8 HOH A 49 530 95 HOH HOH . 
K 8 HOH A 50 531 96 HOH HOH . 
K 8 HOH A 51 532 99 HOH HOH . 
K 8 HOH A 52 533 100 HOH HOH . 
K 8 HOH A 53 534 101 HOH HOH . 
K 8 HOH A 54 535 102 HOH HOH . 
K 8 HOH A 55 536 106 HOH HOH . 
K 8 HOH A 56 537 107 HOH HOH . 
K 8 HOH A 57 538 108 HOH HOH . 
K 8 HOH A 58 539 109 HOH HOH . 
K 8 HOH A 59 540 110 HOH HOH . 
K 8 HOH A 60 541 112 HOH HOH . 
K 8 HOH A 61 542 116 HOH HOH . 
K 8 HOH A 62 543 118 HOH HOH . 
K 8 HOH A 63 544 120 HOH HOH . 
K 8 HOH A 64 545 121 HOH HOH . 
K 8 HOH A 65 546 122 HOH HOH . 
K 8 HOH A 66 547 123 HOH HOH . 
K 8 HOH A 67 548 126 HOH HOH . 
K 8 HOH A 68 549 127 HOH HOH . 
K 8 HOH A 69 550 131 HOH HOH . 
K 8 HOH A 70 551 134 HOH HOH . 
K 8 HOH A 71 552 137 HOH HOH . 
K 8 HOH A 72 553 138 HOH HOH . 
K 8 HOH A 73 554 141 HOH HOH . 
K 8 HOH A 74 555 142 HOH HOH . 
K 8 HOH A 75 556 144 HOH HOH . 
K 8 HOH A 76 557 147 HOH HOH . 
K 8 HOH A 77 558 148 HOH HOH . 
K 8 HOH A 78 559 149 HOH HOH . 
K 8 HOH A 79 560 151 HOH HOH . 
K 8 HOH A 80 561 153 HOH HOH . 
K 8 HOH A 81 562 154 HOH HOH . 
K 8 HOH A 82 563 155 HOH HOH . 
K 8 HOH A 83 564 157 HOH HOH . 
K 8 HOH A 84 565 158 HOH HOH . 
K 8 HOH A 85 566 161 HOH HOH . 
K 8 HOH A 86 567 162 HOH HOH . 
K 8 HOH A 87 568 163 HOH HOH . 
K 8 HOH A 88 569 164 HOH HOH . 
K 8 HOH A 89 570 165 HOH HOH . 
K 8 HOH A 90 571 166 HOH HOH . 
K 8 HOH A 91 572 168 HOH HOH . 
K 8 HOH A 92 573 169 HOH HOH . 
K 8 HOH A 93 574 172 HOH HOH . 
L 8 HOH B 1 481 5 HOH HOH . 
L 8 HOH B 2 482 6 HOH HOH . 
L 8 HOH B 3 483 8 HOH HOH . 
L 8 HOH B 4 484 10 HOH HOH . 
L 8 HOH B 5 485 11 HOH HOH . 
L 8 HOH B 6 486 13 HOH HOH . 
L 8 HOH B 7 487 14 HOH HOH . 
L 8 HOH B 8 488 15 HOH HOH . 
L 8 HOH B 9 489 16 HOH HOH . 
L 8 HOH B 10 490 18 HOH HOH . 
L 8 HOH B 11 491 21 HOH HOH . 
L 8 HOH B 12 492 25 HOH HOH . 
L 8 HOH B 13 493 27 HOH HOH . 
L 8 HOH B 14 494 30 HOH HOH . 
L 8 HOH B 15 495 31 HOH HOH . 
L 8 HOH B 16 496 32 HOH HOH . 
L 8 HOH B 17 497 33 HOH HOH . 
L 8 HOH B 18 498 36 HOH HOH . 
L 8 HOH B 19 499 37 HOH HOH . 
L 8 HOH B 20 501 38 HOH HOH . 
L 8 HOH B 21 502 40 HOH HOH . 
L 8 HOH B 22 503 41 HOH HOH . 
L 8 HOH B 23 504 42 HOH HOH . 
L 8 HOH B 24 505 44 HOH HOH . 
L 8 HOH B 25 506 47 HOH HOH . 
L 8 HOH B 26 507 49 HOH HOH . 
L 8 HOH B 27 508 50 HOH HOH . 
L 8 HOH B 28 509 51 HOH HOH . 
L 8 HOH B 29 510 58 HOH HOH . 
L 8 HOH B 30 511 59 HOH HOH . 
L 8 HOH B 31 512 61 HOH HOH . 
L 8 HOH B 32 513 62 HOH HOH . 
L 8 HOH B 33 514 64 HOH HOH . 
L 8 HOH B 34 515 65 HOH HOH . 
L 8 HOH B 35 516 67 HOH HOH . 
L 8 HOH B 36 517 68 HOH HOH . 
L 8 HOH B 37 518 69 HOH HOH . 
L 8 HOH B 38 519 70 HOH HOH . 
L 8 HOH B 39 520 71 HOH HOH . 
L 8 HOH B 40 521 77 HOH HOH . 
L 8 HOH B 41 522 83 HOH HOH . 
L 8 HOH B 42 523 85 HOH HOH . 
L 8 HOH B 43 524 87 HOH HOH . 
L 8 HOH B 44 525 89 HOH HOH . 
L 8 HOH B 45 526 94 HOH HOH . 
L 8 HOH B 46 527 97 HOH HOH . 
L 8 HOH B 47 528 98 HOH HOH . 
L 8 HOH B 48 529 103 HOH HOH . 
L 8 HOH B 49 530 104 HOH HOH . 
L 8 HOH B 50 531 105 HOH HOH . 
L 8 HOH B 51 532 111 HOH HOH . 
L 8 HOH B 52 533 113 HOH HOH . 
L 8 HOH B 53 534 114 HOH HOH . 
L 8 HOH B 54 535 115 HOH HOH . 
L 8 HOH B 55 536 117 HOH HOH . 
L 8 HOH B 56 537 119 HOH HOH . 
L 8 HOH B 57 538 124 HOH HOH . 
L 8 HOH B 58 539 125 HOH HOH . 
L 8 HOH B 59 540 128 HOH HOH . 
L 8 HOH B 60 541 129 HOH HOH . 
L 8 HOH B 61 542 130 HOH HOH . 
L 8 HOH B 62 543 132 HOH HOH . 
L 8 HOH B 63 544 133 HOH HOH . 
L 8 HOH B 64 545 135 HOH HOH . 
L 8 HOH B 65 546 136 HOH HOH . 
L 8 HOH B 66 547 139 HOH HOH . 
L 8 HOH B 67 548 140 HOH HOH . 
L 8 HOH B 68 549 145 HOH HOH . 
L 8 HOH B 69 550 146 HOH HOH . 
L 8 HOH B 70 551 150 HOH HOH . 
L 8 HOH B 71 552 152 HOH HOH . 
L 8 HOH B 72 553 156 HOH HOH . 
L 8 HOH B 73 554 159 HOH HOH . 
L 8 HOH B 74 555 160 HOH HOH . 
L 8 HOH B 75 556 167 HOH HOH . 
L 8 HOH B 76 557 170 HOH HOH . 
L 8 HOH B 77 558 171 HOH HOH . 
L 8 HOH B 78 559 173 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACT . . . G 6 -61.995 76.546 4.686 1 46.9 ? C ACT 480 A 1 
HETATM 2 O O ACT . . . G 6 -60.813 76.153 4.806 1 42.42 ? O ACT 480 A 1 
HETATM 3 O OXT ACT . . . G 6 -62.723 76.335 5.683 1 43.74 ? OXT ACT 480 A 1 
HETATM 4 C CH3 ACT . . . G 6 -62.5 77.223 3.44 1 24.92 ? CH3 ACT 480 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#