data_3KPH # _model_server_result.job_id '_Wpkd_jHIhhTf3PR8FzkjA' _model_server_result.datetime_utc '2024-12-21 12:04:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 3KPH # _exptl.entry_id 3KPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KPH _cell.length_a 181.865 _cell.length_b 181.865 _cell.length_c 181.865 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 247 n n P O2 PO4 sing 248 n n P O3 PO4 sing 249 n n P O4 PO4 sing 250 n n # _atom_sites.entry_id 3KPH _atom_sites.fract_transf_matrix[1][1] 0.005499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005499 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 302 302 PO4 PO4 . D 2 PO4 B 1 301 301 PO4 PO4 . E 2 PO4 B 1 303 303 PO4 PO4 . F 3 HOH A 1 602 602 HOH HOH . F 3 HOH A 2 603 603 HOH HOH . F 3 HOH A 3 604 604 HOH HOH . F 3 HOH A 4 605 605 HOH HOH . F 3 HOH A 5 607 607 HOH HOH . F 3 HOH A 6 608 608 HOH HOH . F 3 HOH A 7 612 612 HOH HOH . F 3 HOH A 8 629 629 HOH HOH . F 3 HOH A 9 631 631 HOH HOH . F 3 HOH A 10 632 632 HOH HOH . F 3 HOH A 11 633 633 HOH HOH . F 3 HOH A 12 634 634 HOH HOH . F 3 HOH A 13 635 635 HOH HOH . F 3 HOH A 14 636 636 HOH HOH . F 3 HOH A 15 637 637 HOH HOH . F 3 HOH A 16 638 638 HOH HOH . F 3 HOH A 17 645 645 HOH HOH . F 3 HOH A 18 646 646 HOH HOH . F 3 HOH A 19 647 647 HOH HOH . F 3 HOH A 20 648 648 HOH HOH . F 3 HOH A 21 649 649 HOH HOH . F 3 HOH A 22 650 650 HOH HOH . F 3 HOH A 23 651 651 HOH HOH . F 3 HOH A 24 658 658 HOH HOH . F 3 HOH A 25 659 659 HOH HOH . G 3 HOH B 1 601 601 HOH HOH . G 3 HOH B 2 606 606 HOH HOH . G 3 HOH B 3 609 609 HOH HOH . G 3 HOH B 4 610 610 HOH HOH . G 3 HOH B 5 611 611 HOH HOH . G 3 HOH B 6 613 613 HOH HOH . G 3 HOH B 7 614 614 HOH HOH . G 3 HOH B 8 615 615 HOH HOH . G 3 HOH B 9 616 616 HOH HOH . G 3 HOH B 10 617 617 HOH HOH . G 3 HOH B 11 618 618 HOH HOH . G 3 HOH B 12 619 619 HOH HOH . G 3 HOH B 13 620 620 HOH HOH . G 3 HOH B 14 621 621 HOH HOH . G 3 HOH B 15 622 622 HOH HOH . G 3 HOH B 16 623 623 HOH HOH . G 3 HOH B 17 624 624 HOH HOH . G 3 HOH B 18 625 625 HOH HOH . G 3 HOH B 19 626 626 HOH HOH . G 3 HOH B 20 627 627 HOH HOH . G 3 HOH B 21 628 628 HOH HOH . G 3 HOH B 22 630 630 HOH HOH . G 3 HOH B 23 639 639 HOH HOH . G 3 HOH B 24 640 640 HOH HOH . G 3 HOH B 25 641 641 HOH HOH . G 3 HOH B 26 642 642 HOH HOH . G 3 HOH B 27 643 643 HOH HOH . G 3 HOH B 28 644 644 HOH HOH . G 3 HOH B 29 652 652 HOH HOH . G 3 HOH B 30 653 653 HOH HOH . G 3 HOH B 31 654 654 HOH HOH . G 3 HOH B 32 655 655 HOH HOH . G 3 HOH B 33 656 656 HOH HOH . G 3 HOH B 34 657 657 HOH HOH . G 3 HOH B 35 660 660 HOH HOH . G 3 HOH B 36 661 661 HOH HOH . G 3 HOH B 37 662 662 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 29.091 -9.366 -12.124 1 123.86 ? P PO4 301 B 1 HETATM 2 O O1 PO4 . . . D 2 28.207 -10.351 -11.446 1 123.23 ? O1 PO4 301 B 1 HETATM 3 O O2 PO4 . . . D 2 29.755 -10.013 -13.28 1 124.29 ? O2 PO4 301 B 1 HETATM 4 O O3 PO4 . . . D 2 28.278 -8.217 -12.601 1 123.58 ? O3 PO4 301 B 1 HETATM 5 O O4 PO4 . . . D 2 30.124 -8.881 -11.17 1 123.61 ? O4 PO4 301 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #