data_3KPJ # _model_server_result.job_id OXh7Xjq9UPLdfnmpnWljRA _model_server_result.datetime_utc '2024-11-23 04:13:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":290}' # _entry.id 3KPJ # _exptl.entry_id 3KPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KPJ _cell.length_a 94.42 _cell.length_b 94.42 _cell.length_c 186.91 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 3KPJ _atom_sites.fract_transf_matrix[1][1] 0.010591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 3001 3001 SAH SAH . D 3 PO4 A 1 290 1 PO4 PO4 . E 2 SAH B 1 3002 3002 SAH SAH . F 3 PO4 B 1 290 2 PO4 PO4 . G 4 HOH A 1 291 1 HOH HOH . G 4 HOH A 2 292 2 HOH HOH . G 4 HOH A 3 293 3 HOH HOH . G 4 HOH A 4 294 9 HOH HOH . G 4 HOH A 5 295 12 HOH HOH . G 4 HOH A 6 296 21 HOH HOH . G 4 HOH A 7 297 27 HOH HOH . G 4 HOH A 8 298 32 HOH HOH . G 4 HOH A 9 299 35 HOH HOH . G 4 HOH A 10 300 37 HOH HOH . G 4 HOH A 11 301 43 HOH HOH . G 4 HOH A 12 302 47 HOH HOH . G 4 HOH A 13 303 48 HOH HOH . G 4 HOH A 14 304 49 HOH HOH . G 4 HOH A 15 305 54 HOH HOH . G 4 HOH A 16 306 59 HOH HOH . G 4 HOH A 17 307 60 HOH HOH . G 4 HOH A 18 308 68 HOH HOH . G 4 HOH A 19 309 70 HOH HOH . G 4 HOH A 20 310 76 HOH HOH . G 4 HOH A 21 311 83 HOH HOH . G 4 HOH A 22 312 85 HOH HOH . G 4 HOH A 23 313 87 HOH HOH . G 4 HOH A 24 314 94 HOH HOH . G 4 HOH A 25 315 98 HOH HOH . G 4 HOH A 26 316 99 HOH HOH . G 4 HOH A 27 317 105 HOH HOH . G 4 HOH A 28 318 106 HOH HOH . G 4 HOH A 29 319 108 HOH HOH . G 4 HOH A 30 320 122 HOH HOH . G 4 HOH A 31 321 124 HOH HOH . G 4 HOH A 32 322 132 HOH HOH . G 4 HOH A 33 323 134 HOH HOH . G 4 HOH A 34 324 135 HOH HOH . G 4 HOH A 35 325 140 HOH HOH . G 4 HOH A 36 326 141 HOH HOH . G 4 HOH A 37 327 147 HOH HOH . G 4 HOH A 38 328 151 HOH HOH . G 4 HOH A 39 329 152 HOH HOH . G 4 HOH A 40 330 155 HOH HOH . G 4 HOH A 41 331 160 HOH HOH . G 4 HOH A 42 332 161 HOH HOH . G 4 HOH A 43 333 163 HOH HOH . G 4 HOH A 44 334 164 HOH HOH . G 4 HOH A 45 335 179 HOH HOH . G 4 HOH A 46 336 182 HOH HOH . G 4 HOH A 47 337 183 HOH HOH . H 4 HOH B 1 291 4 HOH HOH . H 4 HOH B 2 292 7 HOH HOH . H 4 HOH B 3 293 8 HOH HOH . H 4 HOH B 4 294 15 HOH HOH . H 4 HOH B 5 295 16 HOH HOH . H 4 HOH B 6 296 17 HOH HOH . H 4 HOH B 7 297 19 HOH HOH . H 4 HOH B 8 298 23 HOH HOH . H 4 HOH B 9 299 25 HOH HOH . H 4 HOH B 10 300 28 HOH HOH . H 4 HOH B 11 301 29 HOH HOH . H 4 HOH B 12 302 30 HOH HOH . H 4 HOH B 13 303 34 HOH HOH . H 4 HOH B 14 304 36 HOH HOH . H 4 HOH B 15 305 38 HOH HOH . H 4 HOH B 16 306 39 HOH HOH . H 4 HOH B 17 307 46 HOH HOH . H 4 HOH B 18 308 50 HOH HOH . H 4 HOH B 19 309 51 HOH HOH . H 4 HOH B 20 310 52 HOH HOH . H 4 HOH B 21 311 53 HOH HOH . H 4 HOH B 22 312 64 HOH HOH . H 4 HOH B 23 313 69 HOH HOH . H 4 HOH B 24 314 72 HOH HOH . H 4 HOH B 25 315 79 HOH HOH . H 4 HOH B 26 316 80 HOH HOH . H 4 HOH B 27 317 89 HOH HOH . H 4 HOH B 28 318 93 HOH HOH . H 4 HOH B 29 319 102 HOH HOH . H 4 HOH B 30 320 103 HOH HOH . H 4 HOH B 31 321 104 HOH HOH . H 4 HOH B 32 322 107 HOH HOH . H 4 HOH B 33 323 111 HOH HOH . H 4 HOH B 34 324 113 HOH HOH . H 4 HOH B 35 325 119 HOH HOH . H 4 HOH B 36 326 129 HOH HOH . H 4 HOH B 37 327 144 HOH HOH . H 4 HOH B 38 328 146 HOH HOH . H 4 HOH B 39 329 158 HOH HOH . H 4 HOH B 40 330 168 HOH HOH . H 4 HOH B 41 331 169 HOH HOH . H 4 HOH B 42 332 174 HOH HOH . H 4 HOH B 43 333 175 HOH HOH . H 4 HOH B 44 334 176 HOH HOH . H 4 HOH B 45 335 178 HOH HOH . H 4 HOH B 46 336 180 HOH HOH . H 4 HOH B 47 337 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 27.99 44.565 16.126 1 124.8 ? P PO4 290 A 1 HETATM 2 O O1 PO4 . . . D 3 28.464 44.091 14.773 1 123.23 ? O1 PO4 290 A 1 HETATM 3 O O2 PO4 . . . D 3 26.729 45.363 15.894 1 120.29 ? O2 PO4 290 A 1 HETATM 4 O O3 PO4 . . . D 3 27.707 43.356 16.995 1 129.19 ? O3 PO4 290 A 1 HETATM 5 O O4 PO4 . . . D 3 29.027 45.445 16.804 1 120.89 ? O4 PO4 290 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #