data_3KPJ
#
_model_server_result.job_id            HA492Z6QjHZx6I0jcZhq0A 
_model_server_result.datetime_utc      '2024-11-04 22:54:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kpj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":3001}' 
#
_entry.id    3KPJ 
#
_exptl.entry_id    3KPJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KPJ 
_cell.length_a            94.42 
_cell.length_b            94.42 
_cell.length_c            186.91 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KPJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 281 n n 
N HN1 SAH sing 282 n n 
N HN2 SAH sing 283 n n 
CA CB SAH sing 284 n n 
CA C SAH sing 285 n n 
CA HA SAH sing 286 n n 
CB CG SAH sing 287 n n 
CB HB1 SAH sing 288 n n 
CB HB2 SAH sing 289 n n 
CG SD SAH sing 290 n n 
CG HG1 SAH sing 291 n n 
CG HG2 SAH sing 292 n n 
SD C5' SAH sing 293 n n 
C O SAH doub 294 n n 
C OXT SAH sing 295 n n 
OXT HXT SAH sing 296 n n 
C5' C4' SAH sing 297 n n 
C5' "H5'1" SAH sing 298 n n 
C5' "H5'2" SAH sing 299 n n 
C4' O4' SAH sing 300 n n 
C4' C3' SAH sing 301 n n 
C4' H4' SAH sing 302 n n 
O4' C1' SAH sing 303 n n 
C3' O3' SAH sing 304 n n 
C3' C2' SAH sing 305 n n 
C3' H3' SAH sing 306 n n 
O3' HO3' SAH sing 307 n n 
C2' O2' SAH sing 308 n n 
C2' C1' SAH sing 309 n n 
C2' H2' SAH sing 310 n n 
O2' HO2' SAH sing 311 n n 
C1' N9 SAH sing 312 n n 
C1' H1' SAH sing 313 n n 
N9 C8 SAH sing 314 n y 
N9 C4 SAH sing 315 n y 
C8 N7 SAH doub 316 n y 
C8 H8 SAH sing 317 n n 
N7 C5 SAH sing 318 n y 
C5 C6 SAH sing 319 n y 
C5 C4 SAH doub 320 n y 
C6 N6 SAH sing 321 n n 
C6 N1 SAH doub 322 n y 
N6 HN61 SAH sing 323 n n 
N6 HN62 SAH sing 324 n n 
N1 C2 SAH sing 325 n y 
C2 N3 SAH doub 326 n y 
C2 H2 SAH sing 327 n n 
N3 C4 SAH sing 328 n y 
#
_atom_sites.entry_id                     3KPJ 
_atom_sites.fract_transf_matrix[1][1]    0.010591 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00535 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 3001 3001 SAH SAH . 
D 3 PO4 A 1 290 1 PO4 PO4 . 
E 2 SAH B 1 3002 3002 SAH SAH . 
F 3 PO4 B 1 290 2 PO4 PO4 . 
G 4 HOH A 1 291 1 HOH HOH . 
G 4 HOH A 2 292 2 HOH HOH . 
G 4 HOH A 3 293 3 HOH HOH . 
G 4 HOH A 4 294 9 HOH HOH . 
G 4 HOH A 5 295 12 HOH HOH . 
G 4 HOH A 6 296 21 HOH HOH . 
G 4 HOH A 7 297 27 HOH HOH . 
G 4 HOH A 8 298 32 HOH HOH . 
G 4 HOH A 9 299 35 HOH HOH . 
G 4 HOH A 10 300 37 HOH HOH . 
G 4 HOH A 11 301 43 HOH HOH . 
G 4 HOH A 12 302 47 HOH HOH . 
G 4 HOH A 13 303 48 HOH HOH . 
G 4 HOH A 14 304 49 HOH HOH . 
G 4 HOH A 15 305 54 HOH HOH . 
G 4 HOH A 16 306 59 HOH HOH . 
G 4 HOH A 17 307 60 HOH HOH . 
G 4 HOH A 18 308 68 HOH HOH . 
G 4 HOH A 19 309 70 HOH HOH . 
G 4 HOH A 20 310 76 HOH HOH . 
G 4 HOH A 21 311 83 HOH HOH . 
G 4 HOH A 22 312 85 HOH HOH . 
G 4 HOH A 23 313 87 HOH HOH . 
G 4 HOH A 24 314 94 HOH HOH . 
G 4 HOH A 25 315 98 HOH HOH . 
G 4 HOH A 26 316 99 HOH HOH . 
G 4 HOH A 27 317 105 HOH HOH . 
G 4 HOH A 28 318 106 HOH HOH . 
G 4 HOH A 29 319 108 HOH HOH . 
G 4 HOH A 30 320 122 HOH HOH . 
G 4 HOH A 31 321 124 HOH HOH . 
G 4 HOH A 32 322 132 HOH HOH . 
G 4 HOH A 33 323 134 HOH HOH . 
G 4 HOH A 34 324 135 HOH HOH . 
G 4 HOH A 35 325 140 HOH HOH . 
G 4 HOH A 36 326 141 HOH HOH . 
G 4 HOH A 37 327 147 HOH HOH . 
G 4 HOH A 38 328 151 HOH HOH . 
G 4 HOH A 39 329 152 HOH HOH . 
G 4 HOH A 40 330 155 HOH HOH . 
G 4 HOH A 41 331 160 HOH HOH . 
G 4 HOH A 42 332 161 HOH HOH . 
G 4 HOH A 43 333 163 HOH HOH . 
G 4 HOH A 44 334 164 HOH HOH . 
G 4 HOH A 45 335 179 HOH HOH . 
G 4 HOH A 46 336 182 HOH HOH . 
G 4 HOH A 47 337 183 HOH HOH . 
H 4 HOH B 1 291 4 HOH HOH . 
H 4 HOH B 2 292 7 HOH HOH . 
H 4 HOH B 3 293 8 HOH HOH . 
H 4 HOH B 4 294 15 HOH HOH . 
H 4 HOH B 5 295 16 HOH HOH . 
H 4 HOH B 6 296 17 HOH HOH . 
H 4 HOH B 7 297 19 HOH HOH . 
H 4 HOH B 8 298 23 HOH HOH . 
H 4 HOH B 9 299 25 HOH HOH . 
H 4 HOH B 10 300 28 HOH HOH . 
H 4 HOH B 11 301 29 HOH HOH . 
H 4 HOH B 12 302 30 HOH HOH . 
H 4 HOH B 13 303 34 HOH HOH . 
H 4 HOH B 14 304 36 HOH HOH . 
H 4 HOH B 15 305 38 HOH HOH . 
H 4 HOH B 16 306 39 HOH HOH . 
H 4 HOH B 17 307 46 HOH HOH . 
H 4 HOH B 18 308 50 HOH HOH . 
H 4 HOH B 19 309 51 HOH HOH . 
H 4 HOH B 20 310 52 HOH HOH . 
H 4 HOH B 21 311 53 HOH HOH . 
H 4 HOH B 22 312 64 HOH HOH . 
H 4 HOH B 23 313 69 HOH HOH . 
H 4 HOH B 24 314 72 HOH HOH . 
H 4 HOH B 25 315 79 HOH HOH . 
H 4 HOH B 26 316 80 HOH HOH . 
H 4 HOH B 27 317 89 HOH HOH . 
H 4 HOH B 28 318 93 HOH HOH . 
H 4 HOH B 29 319 102 HOH HOH . 
H 4 HOH B 30 320 103 HOH HOH . 
H 4 HOH B 31 321 104 HOH HOH . 
H 4 HOH B 32 322 107 HOH HOH . 
H 4 HOH B 33 323 111 HOH HOH . 
H 4 HOH B 34 324 113 HOH HOH . 
H 4 HOH B 35 325 119 HOH HOH . 
H 4 HOH B 36 326 129 HOH HOH . 
H 4 HOH B 37 327 144 HOH HOH . 
H 4 HOH B 38 328 146 HOH HOH . 
H 4 HOH B 39 329 158 HOH HOH . 
H 4 HOH B 40 330 168 HOH HOH . 
H 4 HOH B 41 331 169 HOH HOH . 
H 4 HOH B 42 332 174 HOH HOH . 
H 4 HOH B 43 333 175 HOH HOH . 
H 4 HOH B 44 334 176 HOH HOH . 
H 4 HOH B 45 335 178 HOH HOH . 
H 4 HOH B 46 336 180 HOH HOH . 
H 4 HOH B 47 337 181 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 2 27.098 53.19 18.447 1 67.93 ? N SAH 3001 A 1 
HETATM 2 C CA SAH . . . C 2 28.236 52.584 17.752 1 69.72 ? CA SAH 3001 A 1 
HETATM 3 C CB SAH . . . C 2 29.384 52.222 18.692 1 74.95 ? CB SAH 3001 A 1 
HETATM 4 C CG SAH . . . C 2 29.003 51.518 19.998 1 77.15 ? CG SAH 3001 A 1 
HETATM 5 S SD SAH . . . C 2 30.441 50.903 20.922 1 78.73 ? SD SAH 3001 A 1 
HETATM 6 C C SAH . . . C 2 27.818 51.353 16.953 1 69.81 ? C SAH 3001 A 1 
HETATM 7 O O SAH . . . C 2 28.677 50.637 16.45 1 68.63 ? O SAH 3001 A 1 
HETATM 8 O OXT SAH . . . C 2 26.63 51.047 16.795 1 69.54 ? OXT SAH 3001 A 1 
HETATM 9 C C5' SAH . . . C 2 29.901 51.58 22.521 1 87.59 ? C5' SAH 3001 A 1 
HETATM 10 C C4' SAH . . . C 2 30.358 53.024 22.705 1 90.63 ? C4' SAH 3001 A 1 
HETATM 11 O O4' SAH . . . C 2 29.985 53.523 23.974 1 90.12 ? O4' SAH 3001 A 1 
HETATM 12 C C3' SAH . . . C 2 31.868 53.203 22.6 1 91.74 ? C3' SAH 3001 A 1 
HETATM 13 O O3' SAH . . . C 2 32.193 53.919 21.431 1 87.83 ? O3' SAH 3001 A 1 
HETATM 14 C C2' SAH . . . C 2 32.244 54.002 23.833 1 94.34 ? C2' SAH 3001 A 1 
HETATM 15 O O2' SAH . . . C 2 33.142 55.058 23.574 1 97.53 ? O2' SAH 3001 A 1 
HETATM 16 C C1' SAH . . . C 2 30.912 54.525 24.323 1 90.57 ? C1' SAH 3001 A 1 
HETATM 17 N N9 SAH . . . C 2 30.932 54.733 25.772 1 89.93 ? N9 SAH 3001 A 1 
HETATM 18 C C8 SAH . . . C 2 31.831 54.223 26.671 1 87.63 ? C8 SAH 3001 A 1 
HETATM 19 N N7 SAH . . . C 2 31.484 54.663 27.901 1 86.41 ? N7 SAH 3001 A 1 
HETATM 20 C C5 SAH . . . C 2 30.384 55.441 27.795 1 84.29 ? C5 SAH 3001 A 1 
HETATM 21 C C6 SAH . . . C 2 29.628 56.135 28.726 1 85.41 ? C6 SAH 3001 A 1 
HETATM 22 N N6 SAH . . . C 2 29.949 56.106 30.017 1 88.73 ? N6 SAH 3001 A 1 
HETATM 23 N N1 SAH . . . C 2 28.534 56.861 28.308 1 85.41 ? N1 SAH 3001 A 1 
HETATM 24 C C2 SAH . . . C 2 28.205 56.899 26.968 1 86.47 ? C2 SAH 3001 A 1 
HETATM 25 N N3 SAH . . . C 2 28.966 56.212 26.045 1 86.45 ? N3 SAH 3001 A 1 
HETATM 26 C C4 SAH . . . C 2 30.031 55.493 26.458 1 87.81 ? C4 SAH 3001 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#