data_3KPJ
#
_model_server_result.job_id            4qJBk-SR5EsxL3paS0mLMg 
_model_server_result.datetime_utc      '2024-11-04 22:59:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kpj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":3002}' 
#
_entry.id    3KPJ 
#
_exptl.entry_id    3KPJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KPJ 
_cell.length_a            94.42 
_cell.length_b            94.42 
_cell.length_c            186.91 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KPJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 281 n n 
N HN1 SAH sing 282 n n 
N HN2 SAH sing 283 n n 
CA CB SAH sing 284 n n 
CA C SAH sing 285 n n 
CA HA SAH sing 286 n n 
CB CG SAH sing 287 n n 
CB HB1 SAH sing 288 n n 
CB HB2 SAH sing 289 n n 
CG SD SAH sing 290 n n 
CG HG1 SAH sing 291 n n 
CG HG2 SAH sing 292 n n 
SD C5' SAH sing 293 n n 
C O SAH doub 294 n n 
C OXT SAH sing 295 n n 
OXT HXT SAH sing 296 n n 
C5' C4' SAH sing 297 n n 
C5' "H5'1" SAH sing 298 n n 
C5' "H5'2" SAH sing 299 n n 
C4' O4' SAH sing 300 n n 
C4' C3' SAH sing 301 n n 
C4' H4' SAH sing 302 n n 
O4' C1' SAH sing 303 n n 
C3' O3' SAH sing 304 n n 
C3' C2' SAH sing 305 n n 
C3' H3' SAH sing 306 n n 
O3' HO3' SAH sing 307 n n 
C2' O2' SAH sing 308 n n 
C2' C1' SAH sing 309 n n 
C2' H2' SAH sing 310 n n 
O2' HO2' SAH sing 311 n n 
C1' N9 SAH sing 312 n n 
C1' H1' SAH sing 313 n n 
N9 C8 SAH sing 314 n y 
N9 C4 SAH sing 315 n y 
C8 N7 SAH doub 316 n y 
C8 H8 SAH sing 317 n n 
N7 C5 SAH sing 318 n y 
C5 C6 SAH sing 319 n y 
C5 C4 SAH doub 320 n y 
C6 N6 SAH sing 321 n n 
C6 N1 SAH doub 322 n y 
N6 HN61 SAH sing 323 n n 
N6 HN62 SAH sing 324 n n 
N1 C2 SAH sing 325 n y 
C2 N3 SAH doub 326 n y 
C2 H2 SAH sing 327 n n 
N3 C4 SAH sing 328 n y 
#
_atom_sites.entry_id                     3KPJ 
_atom_sites.fract_transf_matrix[1][1]    0.010591 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00535 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 3001 3001 SAH SAH . 
D 3 PO4 A 1 290 1 PO4 PO4 . 
E 2 SAH B 1 3002 3002 SAH SAH . 
F 3 PO4 B 1 290 2 PO4 PO4 . 
G 4 HOH A 1 291 1 HOH HOH . 
G 4 HOH A 2 292 2 HOH HOH . 
G 4 HOH A 3 293 3 HOH HOH . 
G 4 HOH A 4 294 9 HOH HOH . 
G 4 HOH A 5 295 12 HOH HOH . 
G 4 HOH A 6 296 21 HOH HOH . 
G 4 HOH A 7 297 27 HOH HOH . 
G 4 HOH A 8 298 32 HOH HOH . 
G 4 HOH A 9 299 35 HOH HOH . 
G 4 HOH A 10 300 37 HOH HOH . 
G 4 HOH A 11 301 43 HOH HOH . 
G 4 HOH A 12 302 47 HOH HOH . 
G 4 HOH A 13 303 48 HOH HOH . 
G 4 HOH A 14 304 49 HOH HOH . 
G 4 HOH A 15 305 54 HOH HOH . 
G 4 HOH A 16 306 59 HOH HOH . 
G 4 HOH A 17 307 60 HOH HOH . 
G 4 HOH A 18 308 68 HOH HOH . 
G 4 HOH A 19 309 70 HOH HOH . 
G 4 HOH A 20 310 76 HOH HOH . 
G 4 HOH A 21 311 83 HOH HOH . 
G 4 HOH A 22 312 85 HOH HOH . 
G 4 HOH A 23 313 87 HOH HOH . 
G 4 HOH A 24 314 94 HOH HOH . 
G 4 HOH A 25 315 98 HOH HOH . 
G 4 HOH A 26 316 99 HOH HOH . 
G 4 HOH A 27 317 105 HOH HOH . 
G 4 HOH A 28 318 106 HOH HOH . 
G 4 HOH A 29 319 108 HOH HOH . 
G 4 HOH A 30 320 122 HOH HOH . 
G 4 HOH A 31 321 124 HOH HOH . 
G 4 HOH A 32 322 132 HOH HOH . 
G 4 HOH A 33 323 134 HOH HOH . 
G 4 HOH A 34 324 135 HOH HOH . 
G 4 HOH A 35 325 140 HOH HOH . 
G 4 HOH A 36 326 141 HOH HOH . 
G 4 HOH A 37 327 147 HOH HOH . 
G 4 HOH A 38 328 151 HOH HOH . 
G 4 HOH A 39 329 152 HOH HOH . 
G 4 HOH A 40 330 155 HOH HOH . 
G 4 HOH A 41 331 160 HOH HOH . 
G 4 HOH A 42 332 161 HOH HOH . 
G 4 HOH A 43 333 163 HOH HOH . 
G 4 HOH A 44 334 164 HOH HOH . 
G 4 HOH A 45 335 179 HOH HOH . 
G 4 HOH A 46 336 182 HOH HOH . 
G 4 HOH A 47 337 183 HOH HOH . 
H 4 HOH B 1 291 4 HOH HOH . 
H 4 HOH B 2 292 7 HOH HOH . 
H 4 HOH B 3 293 8 HOH HOH . 
H 4 HOH B 4 294 15 HOH HOH . 
H 4 HOH B 5 295 16 HOH HOH . 
H 4 HOH B 6 296 17 HOH HOH . 
H 4 HOH B 7 297 19 HOH HOH . 
H 4 HOH B 8 298 23 HOH HOH . 
H 4 HOH B 9 299 25 HOH HOH . 
H 4 HOH B 10 300 28 HOH HOH . 
H 4 HOH B 11 301 29 HOH HOH . 
H 4 HOH B 12 302 30 HOH HOH . 
H 4 HOH B 13 303 34 HOH HOH . 
H 4 HOH B 14 304 36 HOH HOH . 
H 4 HOH B 15 305 38 HOH HOH . 
H 4 HOH B 16 306 39 HOH HOH . 
H 4 HOH B 17 307 46 HOH HOH . 
H 4 HOH B 18 308 50 HOH HOH . 
H 4 HOH B 19 309 51 HOH HOH . 
H 4 HOH B 20 310 52 HOH HOH . 
H 4 HOH B 21 311 53 HOH HOH . 
H 4 HOH B 22 312 64 HOH HOH . 
H 4 HOH B 23 313 69 HOH HOH . 
H 4 HOH B 24 314 72 HOH HOH . 
H 4 HOH B 25 315 79 HOH HOH . 
H 4 HOH B 26 316 80 HOH HOH . 
H 4 HOH B 27 317 89 HOH HOH . 
H 4 HOH B 28 318 93 HOH HOH . 
H 4 HOH B 29 319 102 HOH HOH . 
H 4 HOH B 30 320 103 HOH HOH . 
H 4 HOH B 31 321 104 HOH HOH . 
H 4 HOH B 32 322 107 HOH HOH . 
H 4 HOH B 33 323 111 HOH HOH . 
H 4 HOH B 34 324 113 HOH HOH . 
H 4 HOH B 35 325 119 HOH HOH . 
H 4 HOH B 36 326 129 HOH HOH . 
H 4 HOH B 37 327 144 HOH HOH . 
H 4 HOH B 38 328 146 HOH HOH . 
H 4 HOH B 39 329 158 HOH HOH . 
H 4 HOH B 40 330 168 HOH HOH . 
H 4 HOH B 41 331 169 HOH HOH . 
H 4 HOH B 42 332 174 HOH HOH . 
H 4 HOH B 43 333 175 HOH HOH . 
H 4 HOH B 44 334 176 HOH HOH . 
H 4 HOH B 45 335 178 HOH HOH . 
H 4 HOH B 46 336 180 HOH HOH . 
H 4 HOH B 47 337 181 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . E 2 28.029 51.616 -27.13 1 54.8 ? N SAH 3002 B 1 
HETATM 2 C CA SAH . . . E 2 28.899 52.597 -26.483 1 58.43 ? CA SAH 3002 B 1 
HETATM 3 C CB SAH . . . E 2 29.814 53.353 -27.456 1 56.13 ? CB SAH 3002 B 1 
HETATM 4 C CG SAH . . . E 2 29.169 53.933 -28.723 1 61.95 ? CG SAH 3002 B 1 
HETATM 5 S SD SAH . . . E 2 30.259 55.107 -29.582 1 60.51 ? SD SAH 3002 B 1 
HETATM 6 C C SAH . . . E 2 28.06 53.554 -25.633 1 58.92 ? C SAH 3002 B 1 
HETATM 7 O O SAH . . . E 2 26.882 53.279 -25.353 1 54.01 ? O SAH 3002 B 1 
HETATM 8 O OXT SAH . . . E 2 28.554 54.6 -25.2 1 55.92 ? OXT SAH 3002 B 1 
HETATM 9 C C5' SAH . . . E 2 30.084 54.349 -31.224 1 62.72 ? C5' SAH 3002 B 1 
HETATM 10 C C4' SAH . . . E 2 30.938 53.094 -31.41 1 68.7 ? C4' SAH 3002 B 1 
HETATM 11 O O4' SAH . . . E 2 30.794 52.547 -32.707 1 73.7 ? O4' SAH 3002 B 1 
HETATM 12 C C3' SAH . . . E 2 32.436 53.285 -31.204 1 67.93 ? C3' SAH 3002 B 1 
HETATM 13 O O3' SAH . . . E 2 32.826 52.529 -30.086 1 59.24 ? O3' SAH 3002 B 1 
HETATM 14 C C2' SAH . . . E 2 33.063 52.755 -32.492 1 68.75 ? C2' SAH 3002 B 1 
HETATM 15 O O2' SAH . . . E 2 34.271 52.043 -32.357 1 67.58 ? O2' SAH 3002 B 1 
HETATM 16 C C1' SAH . . . E 2 31.982 51.847 -33.034 1 71.5 ? C1' SAH 3002 B 1 
HETATM 17 N N9 SAH . . . E 2 32.06 51.671 -34.489 1 71.75 ? N9 SAH 3002 B 1 
HETATM 18 C C8 SAH . . . E 2 32.671 52.505 -35.379 1 72.75 ? C8 SAH 3002 B 1 
HETATM 19 N N7 SAH . . . E 2 32.497 51.999 -36.625 1 75.75 ? N7 SAH 3002 B 1 
HETATM 20 C C5 SAH . . . E 2 31.774 50.859 -36.548 1 72.08 ? C5 SAH 3002 B 1 
HETATM 21 C C6 SAH . . . E 2 31.314 49.95 -37.507 1 67.74 ? C6 SAH 3002 B 1 
HETATM 22 N N6 SAH . . . E 2 31.559 50.11 -38.816 1 67.59 ? N6 SAH 3002 B 1 
HETATM 23 N N1 SAH . . . E 2 30.582 48.856 -37.098 1 66 ? N1 SAH 3002 B 1 
HETATM 24 C C2 SAH . . . E 2 30.326 48.669 -35.756 1 65.5 ? C2 SAH 3002 B 1 
HETATM 25 N N3 SAH . . . E 2 30.789 49.565 -34.812 1 64.17 ? N3 SAH 3002 B 1 
HETATM 26 C C4 SAH . . . E 2 31.498 50.646 -35.202 1 70.34 ? C4 SAH 3002 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#