data_3KPK # _model_server_result.job_id cMQ2kG-b2gBOgw34Pxf4Gw _model_server_result.datetime_utc '2024-11-26 02:01:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kpk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 3KPK # _exptl.entry_id 3KPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 34.081 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HYDROSULFURIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3KPK _cell.length_a 150.08 _cell.length_b 150.08 _cell.length_c 81.679 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 356 A CYS 356 1_555 D S H2S . A H2S 502 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.083 ? covale ? covale2 A SG CYS 356 A CYS 356 1_555 D S H2S . A H2S 502 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'H2 S' _chem_comp.formula_weight 34.081 _chem_comp.id H2S _chem_comp.mon_nstd_flag . _chem_comp.name 'HYDROSULFURIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HYDROGEN SULFIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S HS1 H2S sing 220 n n S HS2 H2S sing 221 n n # _atom_sites.entry_id 3KPK _atom_sites.fract_transf_matrix[1][1] 0.006663 _atom_sites.fract_transf_matrix[1][2] 0.003847 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 500 500 FAD FAD . C 3 LMT A 1 501 501 LMT LMT . D 4 H2S A 1 502 502 H2S H2S . E 4 H2S A 1 503 503 H2S H2S . F 5 PGR A 1 504 504 PGR PGR . G 6 HOH A 1 435 1 HOH HOH . G 6 HOH A 2 436 2 HOH HOH . G 6 HOH A 3 437 3 HOH HOH . G 6 HOH A 4 438 4 HOH HOH . G 6 HOH A 5 439 5 HOH HOH . G 6 HOH A 6 440 6 HOH HOH . G 6 HOH A 7 441 7 HOH HOH . G 6 HOH A 8 442 8 HOH HOH . G 6 HOH A 9 443 9 HOH HOH . G 6 HOH A 10 444 10 HOH HOH . G 6 HOH A 11 445 11 HOH HOH . G 6 HOH A 12 446 12 HOH HOH . G 6 HOH A 13 447 13 HOH HOH . G 6 HOH A 14 448 14 HOH HOH . G 6 HOH A 15 449 15 HOH HOH . G 6 HOH A 16 450 16 HOH HOH . G 6 HOH A 17 451 17 HOH HOH . G 6 HOH A 18 452 18 HOH HOH . G 6 HOH A 19 453 19 HOH HOH . G 6 HOH A 20 454 20 HOH HOH . G 6 HOH A 21 455 21 HOH HOH . G 6 HOH A 22 456 22 HOH HOH . G 6 HOH A 23 457 23 HOH HOH . G 6 HOH A 24 458 24 HOH HOH . G 6 HOH A 25 459 25 HOH HOH . G 6 HOH A 26 460 26 HOH HOH . G 6 HOH A 27 461 27 HOH HOH . G 6 HOH A 28 462 28 HOH HOH . G 6 HOH A 29 463 29 HOH HOH . G 6 HOH A 30 464 30 HOH HOH . G 6 HOH A 31 465 31 HOH HOH . G 6 HOH A 32 466 32 HOH HOH . G 6 HOH A 33 467 33 HOH HOH . G 6 HOH A 34 468 34 HOH HOH . G 6 HOH A 35 469 35 HOH HOH . G 6 HOH A 36 470 36 HOH HOH . G 6 HOH A 37 471 37 HOH HOH . G 6 HOH A 38 472 38 HOH HOH . G 6 HOH A 39 473 39 HOH HOH . G 6 HOH A 40 474 40 HOH HOH . G 6 HOH A 41 475 41 HOH HOH . G 6 HOH A 42 476 42 HOH HOH . G 6 HOH A 43 477 43 HOH HOH . G 6 HOH A 44 478 44 HOH HOH . G 6 HOH A 45 479 45 HOH HOH . G 6 HOH A 46 480 46 HOH HOH . G 6 HOH A 47 481 47 HOH HOH . G 6 HOH A 48 482 48 HOH HOH . G 6 HOH A 49 483 49 HOH HOH . G 6 HOH A 50 484 50 HOH HOH . G 6 HOH A 51 485 51 HOH HOH . G 6 HOH A 52 486 52 HOH HOH . G 6 HOH A 53 487 53 HOH HOH . G 6 HOH A 54 488 54 HOH HOH . G 6 HOH A 55 489 55 HOH HOH . G 6 HOH A 56 490 56 HOH HOH . G 6 HOH A 57 491 57 HOH HOH . G 6 HOH A 58 492 58 HOH HOH . G 6 HOH A 59 493 59 HOH HOH . G 6 HOH A 60 494 60 HOH HOH . G 6 HOH A 61 495 61 HOH HOH . G 6 HOH A 62 496 62 HOH HOH . G 6 HOH A 63 497 63 HOH HOH . G 6 HOH A 64 498 64 HOH HOH . G 6 HOH A 65 499 65 HOH HOH . G 6 HOH A 66 505 66 HOH HOH . G 6 HOH A 67 506 67 HOH HOH . G 6 HOH A 68 507 68 HOH HOH . G 6 HOH A 69 508 69 HOH HOH . G 6 HOH A 70 509 70 HOH HOH . G 6 HOH A 71 510 71 HOH HOH . G 6 HOH A 72 511 72 HOH HOH . G 6 HOH A 73 512 73 HOH HOH . G 6 HOH A 74 513 74 HOH HOH . G 6 HOH A 75 514 75 HOH HOH . G 6 HOH A 76 515 76 HOH HOH . G 6 HOH A 77 516 77 HOH HOH . G 6 HOH A 78 517 78 HOH HOH . G 6 HOH A 79 518 79 HOH HOH . G 6 HOH A 80 519 80 HOH HOH . G 6 HOH A 81 520 81 HOH HOH . G 6 HOH A 82 521 82 HOH HOH . G 6 HOH A 83 522 83 HOH HOH . G 6 HOH A 84 523 84 HOH HOH . G 6 HOH A 85 524 85 HOH HOH . G 6 HOH A 86 525 86 HOH HOH . G 6 HOH A 87 526 87 HOH HOH . G 6 HOH A 88 527 88 HOH HOH . G 6 HOH A 89 528 89 HOH HOH . G 6 HOH A 90 529 90 HOH HOH . G 6 HOH A 91 530 91 HOH HOH . G 6 HOH A 92 531 92 HOH HOH . G 6 HOH A 93 532 93 HOH HOH . G 6 HOH A 94 533 94 HOH HOH . G 6 HOH A 95 534 95 HOH HOH . G 6 HOH A 96 535 96 HOH HOH . G 6 HOH A 97 536 97 HOH HOH . G 6 HOH A 98 537 98 HOH HOH . G 6 HOH A 99 538 99 HOH HOH . G 6 HOH A 100 539 100 HOH HOH . G 6 HOH A 101 540 101 HOH HOH . G 6 HOH A 102 541 102 HOH HOH . G 6 HOH A 103 542 103 HOH HOH . G 6 HOH A 104 543 104 HOH HOH . G 6 HOH A 105 544 105 HOH HOH . G 6 HOH A 106 545 106 HOH HOH . G 6 HOH A 107 546 107 HOH HOH . G 6 HOH A 108 547 108 HOH HOH . G 6 HOH A 109 548 109 HOH HOH . G 6 HOH A 110 549 110 HOH HOH . G 6 HOH A 111 550 111 HOH HOH . G 6 HOH A 112 551 112 HOH HOH . G 6 HOH A 113 552 113 HOH HOH . G 6 HOH A 114 553 114 HOH HOH . G 6 HOH A 115 554 115 HOH HOH . G 6 HOH A 116 555 116 HOH HOH . G 6 HOH A 117 556 117 HOH HOH . G 6 HOH A 118 557 118 HOH HOH . G 6 HOH A 119 558 119 HOH HOH . G 6 HOH A 120 559 120 HOH HOH . G 6 HOH A 121 560 121 HOH HOH . G 6 HOH A 122 561 122 HOH HOH . G 6 HOH A 123 562 123 HOH HOH . G 6 HOH A 124 563 124 HOH HOH . G 6 HOH A 125 564 125 HOH HOH . G 6 HOH A 126 565 126 HOH HOH . G 6 HOH A 127 566 127 HOH HOH . G 6 HOH A 128 567 128 HOH HOH . G 6 HOH A 129 568 129 HOH HOH . G 6 HOH A 130 569 130 HOH HOH . G 6 HOH A 131 570 131 HOH HOH . G 6 HOH A 132 571 132 HOH HOH . G 6 HOH A 133 572 133 HOH HOH . G 6 HOH A 134 573 134 HOH HOH . G 6 HOH A 135 574 135 HOH HOH . G 6 HOH A 136 575 136 HOH HOH . G 6 HOH A 137 576 137 HOH HOH . G 6 HOH A 138 577 138 HOH HOH . G 6 HOH A 139 578 139 HOH HOH . G 6 HOH A 140 579 140 HOH HOH . G 6 HOH A 141 580 141 HOH HOH . G 6 HOH A 142 581 142 HOH HOH . G 6 HOH A 143 582 143 HOH HOH . G 6 HOH A 144 583 144 HOH HOH . G 6 HOH A 145 584 145 HOH HOH . G 6 HOH A 146 585 146 HOH HOH . G 6 HOH A 147 586 147 HOH HOH . G 6 HOH A 148 587 148 HOH HOH . G 6 HOH A 149 588 149 HOH HOH . G 6 HOH A 150 589 150 HOH HOH . G 6 HOH A 151 590 151 HOH HOH . G 6 HOH A 152 591 152 HOH HOH . G 6 HOH A 153 592 153 HOH HOH . G 6 HOH A 154 593 154 HOH HOH . G 6 HOH A 155 594 155 HOH HOH . G 6 HOH A 156 595 156 HOH HOH . G 6 HOH A 157 596 157 HOH HOH . G 6 HOH A 158 597 158 HOH HOH . G 6 HOH A 159 598 159 HOH HOH . G 6 HOH A 160 599 160 HOH HOH . G 6 HOH A 161 600 161 HOH HOH . G 6 HOH A 162 601 162 HOH HOH . G 6 HOH A 163 602 163 HOH HOH . G 6 HOH A 164 603 164 HOH HOH . G 6 HOH A 165 604 165 HOH HOH . G 6 HOH A 166 605 166 HOH HOH . G 6 HOH A 167 606 167 HOH HOH . G 6 HOH A 168 607 168 HOH HOH . G 6 HOH A 169 608 169 HOH HOH . G 6 HOH A 170 609 170 HOH HOH . G 6 HOH A 171 610 171 HOH HOH . G 6 HOH A 172 611 172 HOH HOH . G 6 HOH A 173 612 173 HOH HOH . G 6 HOH A 174 613 174 HOH HOH . G 6 HOH A 175 614 175 HOH HOH . G 6 HOH A 176 615 176 HOH HOH . G 6 HOH A 177 616 177 HOH HOH . G 6 HOH A 178 617 178 HOH HOH . G 6 HOH A 179 618 179 HOH HOH . G 6 HOH A 180 619 180 HOH HOH . G 6 HOH A 181 620 181 HOH HOH . G 6 HOH A 182 621 182 HOH HOH . G 6 HOH A 183 622 183 HOH HOH . G 6 HOH A 184 623 184 HOH HOH . G 6 HOH A 185 624 185 HOH HOH . G 6 HOH A 186 625 186 HOH HOH . G 6 HOH A 187 626 187 HOH HOH . G 6 HOH A 188 627 188 HOH HOH . G 6 HOH A 189 628 189 HOH HOH . G 6 HOH A 190 629 190 HOH HOH . G 6 HOH A 191 630 191 HOH HOH . G 6 HOH A 192 631 192 HOH HOH . G 6 HOH A 193 632 193 HOH HOH . G 6 HOH A 194 633 194 HOH HOH . G 6 HOH A 195 634 195 HOH HOH . G 6 HOH A 196 635 196 HOH HOH . G 6 HOH A 197 636 197 HOH HOH . G 6 HOH A 198 637 198 HOH HOH . G 6 HOH A 199 638 199 HOH HOH . G 6 HOH A 200 639 200 HOH HOH . G 6 HOH A 201 640 201 HOH HOH . G 6 HOH A 202 641 202 HOH HOH . G 6 HOH A 203 642 203 HOH HOH . G 6 HOH A 204 643 204 HOH HOH . G 6 HOH A 205 644 205 HOH HOH . G 6 HOH A 206 645 206 HOH HOH . G 6 HOH A 207 646 207 HOH HOH . G 6 HOH A 208 647 208 HOH HOH . G 6 HOH A 209 648 209 HOH HOH . G 6 HOH A 210 649 210 HOH HOH . G 6 HOH A 211 650 211 HOH HOH . G 6 HOH A 212 651 212 HOH HOH . G 6 HOH A 213 652 213 HOH HOH . G 6 HOH A 214 653 214 HOH HOH . G 6 HOH A 215 654 215 HOH HOH . G 6 HOH A 216 655 216 HOH HOH . G 6 HOH A 217 656 217 HOH HOH . G 6 HOH A 218 657 218 HOH HOH . G 6 HOH A 219 658 219 HOH HOH . G 6 HOH A 220 659 220 HOH HOH . G 6 HOH A 221 660 221 HOH HOH . G 6 HOH A 222 661 222 HOH HOH . G 6 HOH A 223 662 223 HOH HOH . G 6 HOH A 224 663 224 HOH HOH . G 6 HOH A 225 664 225 HOH HOH . G 6 HOH A 226 665 226 HOH HOH . G 6 HOH A 227 666 227 HOH HOH . G 6 HOH A 228 667 228 HOH HOH . G 6 HOH A 229 668 229 HOH HOH . G 6 HOH A 230 669 230 HOH HOH . G 6 HOH A 231 670 231 HOH HOH . G 6 HOH A 232 671 232 HOH HOH . G 6 HOH A 233 672 233 HOH HOH . G 6 HOH A 234 673 234 HOH HOH . G 6 HOH A 235 674 235 HOH HOH . G 6 HOH A 236 675 236 HOH HOH . G 6 HOH A 237 676 237 HOH HOH . G 6 HOH A 238 677 238 HOH HOH . G 6 HOH A 239 678 239 HOH HOH . G 6 HOH A 240 679 240 HOH HOH . G 6 HOH A 241 680 241 HOH HOH . G 6 HOH A 242 681 242 HOH HOH . G 6 HOH A 243 682 243 HOH HOH . G 6 HOH A 244 683 244 HOH HOH . G 6 HOH A 245 684 245 HOH HOH . G 6 HOH A 246 685 246 HOH HOH . G 6 HOH A 247 686 247 HOH HOH . G 6 HOH A 248 687 248 HOH HOH . G 6 HOH A 249 688 249 HOH HOH . G 6 HOH A 250 689 250 HOH HOH . G 6 HOH A 251 690 251 HOH HOH . G 6 HOH A 252 691 252 HOH HOH . G 6 HOH A 253 692 253 HOH HOH . G 6 HOH A 254 693 254 HOH HOH . G 6 HOH A 255 694 255 HOH HOH . G 6 HOH A 256 695 256 HOH HOH . G 6 HOH A 257 696 257 HOH HOH . G 6 HOH A 258 697 258 HOH HOH . G 6 HOH A 259 698 259 HOH HOH . G 6 HOH A 260 699 260 HOH HOH . G 6 HOH A 261 700 261 HOH HOH . G 6 HOH A 262 701 262 HOH HOH . G 6 HOH A 263 702 263 HOH HOH . G 6 HOH A 264 703 264 HOH HOH . G 6 HOH A 265 704 265 HOH HOH . G 6 HOH A 266 705 266 HOH HOH . G 6 HOH A 267 706 267 HOH HOH . G 6 HOH A 268 707 268 HOH HOH . G 6 HOH A 269 708 269 HOH HOH . G 6 HOH A 270 709 270 HOH HOH . G 6 HOH A 271 710 271 HOH HOH . G 6 HOH A 272 711 272 HOH HOH . G 6 HOH A 273 712 273 HOH HOH . G 6 HOH A 274 713 274 HOH HOH . G 6 HOH A 275 714 275 HOH HOH . G 6 HOH A 276 715 276 HOH HOH . G 6 HOH A 277 716 277 HOH HOH . G 6 HOH A 278 717 278 HOH HOH . G 6 HOH A 279 718 279 HOH HOH . G 6 HOH A 280 719 280 HOH HOH . G 6 HOH A 281 720 281 HOH HOH . G 6 HOH A 282 721 282 HOH HOH . G 6 HOH A 283 722 283 HOH HOH . G 6 HOH A 284 723 284 HOH HOH . G 6 HOH A 285 724 285 HOH HOH . G 6 HOH A 286 725 286 HOH HOH . G 6 HOH A 287 726 287 HOH HOH . G 6 HOH A 288 727 288 HOH HOH . G 6 HOH A 289 728 289 HOH HOH . G 6 HOH A 290 729 290 HOH HOH . G 6 HOH A 291 730 291 HOH HOH . G 6 HOH A 292 731 292 HOH HOH . G 6 HOH A 293 732 293 HOH HOH . G 6 HOH A 294 733 294 HOH HOH . G 6 HOH A 295 734 295 HOH HOH . G 6 HOH A 296 735 296 HOH HOH . G 6 HOH A 297 736 297 HOH HOH . G 6 HOH A 298 737 298 HOH HOH . G 6 HOH A 299 738 299 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol S _atom_site.label_atom_id S _atom_site.label_comp_id H2S _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 49.942 _atom_site.Cartn_y -14.731 _atom_site.Cartn_z 5.003 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 108.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id S _atom_site.auth_comp_id H2S _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #