data_3KQ6
#
_model_server_result.job_id            LopmdybxkXD0bgOFhE4gEg 
_model_server_result.datetime_utc      '2024-11-26 08:24:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kq6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":100}' 
#
_entry.id    3KQ6 
#
_exptl.entry_id    3KQ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.111 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHENOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3KQ6 
_cell.length_a            78.091 
_cell.length_b            78.091 
_cell.length_c            36.399 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KQ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 78.091 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 39.0455 67.62879 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A ND1 HIS 4 A HIS 4 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc2 A ND1 HIS 8 A HIS 8 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc3 B NE2 HIS 10 B HIS 10 1_555 G ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc4 D NE2 HIS 10 D HIS 10 1_555 I ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C6 H6 O' 
_chem_comp.formula_weight    94.111 
_chem_comp.id                IPH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHENOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IPH doub 158 n y 
C1 C6 IPH sing 159 n y 
C1 O1 IPH sing 160 n n 
C2 C3 IPH sing 161 n y 
C2 H2 IPH sing 162 n n 
C3 C4 IPH doub 163 n y 
C3 H3 IPH sing 164 n n 
C4 C5 IPH sing 165 n y 
C4 H4 IPH sing 166 n n 
C5 C6 IPH doub 167 n y 
C5 H5 IPH sing 168 n n 
C6 H6 IPH sing 169 n n 
O1 HO1 IPH sing 170 n n 
#
_atom_sites.entry_id                     3KQ6 
_atom_sites.fract_transf_matrix[1][1]    0.012806 
_atom_sites.fract_transf_matrix[1][2]    0.007393 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014787 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027473 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 301 301 ZN ZN . 
F 4 CL A 1 302 302 CL CL . 
G 3 ZN B 1 101 101 ZN ZN . 
H 5 IPH C 1 100 100 IPH IPH . 
I 3 ZN D 1 201 201 ZN ZN . 
J 4 CL D 1 202 202 CL CL . 
K 6 HOH A 1 22 22 HOH HOH . 
K 6 HOH A 2 23 23 HOH HOH . 
K 6 HOH A 3 24 24 HOH HOH . 
K 6 HOH A 4 25 25 HOH HOH . 
K 6 HOH A 5 26 26 HOH HOH . 
K 6 HOH A 6 27 27 HOH HOH . 
K 6 HOH A 7 28 28 HOH HOH . 
K 6 HOH A 8 33 33 HOH HOH . 
K 6 HOH A 9 37 37 HOH HOH . 
K 6 HOH A 10 38 38 HOH HOH . 
K 6 HOH A 11 40 40 HOH HOH . 
K 6 HOH A 12 41 41 HOH HOH . 
K 6 HOH A 13 46 46 HOH HOH . 
K 6 HOH A 14 54 54 HOH HOH . 
K 6 HOH A 15 61 61 HOH HOH . 
K 6 HOH A 16 62 62 HOH HOH . 
K 6 HOH A 17 76 76 HOH HOH . 
L 6 HOH B 1 31 31 HOH HOH . 
L 6 HOH B 2 32 32 HOH HOH . 
L 6 HOH B 3 33 33 HOH HOH . 
L 6 HOH B 4 34 34 HOH HOH . 
L 6 HOH B 5 35 35 HOH HOH . 
L 6 HOH B 6 36 36 HOH HOH . 
L 6 HOH B 7 37 37 HOH HOH . 
L 6 HOH B 8 39 39 HOH HOH . 
L 6 HOH B 9 42 42 HOH HOH . 
L 6 HOH B 10 44 44 HOH HOH . 
L 6 HOH B 11 51 51 HOH HOH . 
L 6 HOH B 12 55 55 HOH HOH . 
L 6 HOH B 13 57 57 HOH HOH . 
L 6 HOH B 14 58 58 HOH HOH . 
L 6 HOH B 15 64 64 HOH HOH . 
L 6 HOH B 16 65 65 HOH HOH . 
L 6 HOH B 17 68 68 HOH HOH . 
L 6 HOH B 18 74 74 HOH HOH . 
L 6 HOH B 19 75 75 HOH HOH . 
L 6 HOH B 20 78 78 HOH HOH . 
L 6 HOH B 21 80 80 HOH HOH . 
M 6 HOH C 1 22 22 HOH HOH . 
M 6 HOH C 2 23 23 HOH HOH . 
M 6 HOH C 3 24 24 HOH HOH . 
M 6 HOH C 4 25 25 HOH HOH . 
M 6 HOH C 5 26 26 HOH HOH . 
M 6 HOH C 6 29 29 HOH HOH . 
M 6 HOH C 7 34 34 HOH HOH . 
M 6 HOH C 8 35 35 HOH HOH . 
M 6 HOH C 9 48 48 HOH HOH . 
M 6 HOH C 10 49 49 HOH HOH . 
M 6 HOH C 11 50 50 HOH HOH . 
M 6 HOH C 12 53 53 HOH HOH . 
M 6 HOH C 13 59 59 HOH HOH . 
M 6 HOH C 14 60 60 HOH HOH . 
M 6 HOH C 15 63 63 HOH HOH . 
M 6 HOH C 16 69 69 HOH HOH . 
M 6 HOH C 17 77 77 HOH HOH . 
M 6 HOH C 18 79 79 HOH HOH . 
N 6 HOH D 1 31 31 HOH HOH . 
N 6 HOH D 2 32 32 HOH HOH . 
N 6 HOH D 3 33 33 HOH HOH . 
N 6 HOH D 4 34 34 HOH HOH . 
N 6 HOH D 5 35 35 HOH HOH . 
N 6 HOH D 6 36 36 HOH HOH . 
N 6 HOH D 7 37 37 HOH HOH . 
N 6 HOH D 8 38 38 HOH HOH . 
N 6 HOH D 9 39 39 HOH HOH . 
N 6 HOH D 10 40 40 HOH HOH . 
N 6 HOH D 11 41 41 HOH HOH . 
N 6 HOH D 12 42 42 HOH HOH . 
N 6 HOH D 13 43 43 HOH HOH . 
N 6 HOH D 14 44 44 HOH HOH . 
N 6 HOH D 15 45 45 HOH HOH . 
N 6 HOH D 16 47 47 HOH HOH . 
N 6 HOH D 17 52 52 HOH HOH . 
N 6 HOH D 18 56 56 HOH HOH . 
N 6 HOH D 19 66 66 HOH HOH . 
N 6 HOH D 20 67 67 HOH HOH . 
N 6 HOH D 21 70 70 HOH HOH . 
N 6 HOH D 22 71 71 HOH HOH . 
N 6 HOH D 23 72 72 HOH HOH . 
N 6 HOH D 24 73 73 HOH HOH . 
N 6 HOH D 25 81 81 HOH HOH . 
N 6 HOH D 26 82 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IPH . . . H 5 30.01 17.015 -9.963 1 34.72 ? C1 IPH 100 C 1 
HETATM 2 C C2 IPH . . . H 5 31.426 17.133 -10.176 1 33.43 ? C2 IPH 100 C 1 
HETATM 3 C C3 IPH . . . H 5 32.21 17.489 -9.017 1 32.04 ? C3 IPH 100 C 1 
HETATM 4 C C4 IPH . . . H 5 31.578 17.702 -7.765 1 33.84 ? C4 IPH 100 C 1 
HETATM 5 C C5 IPH . . . H 5 30.174 17.576 -7.599 1 33.51 ? C5 IPH 100 C 1 
HETATM 6 C C6 IPH . . . H 5 29.347 17.219 -8.737 1 32.74 ? C6 IPH 100 C 1 
HETATM 7 O O1 IPH . . . H 5 29.217 16.673 -11.038 1 32.01 ? O1 IPH 100 C 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#