data_3KQ8 # _model_server_result.job_id 1bKMZ5iskN4hgXUVNf6ShA _model_server_result.datetime_utc '2024-11-22 05:35:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kq8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":9}' # _entry.id 3KQ8 # _exptl.entry_id 3KQ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KQ8 _cell.length_a 42.242 _cell.length_b 42.242 _cell.length_c 23.929 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KQ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DG 1 A DG 1 1_555 A P UMS 2 A UMS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale2 A O3' UMS 2 A UMS 2 1_555 A P DG 3 A DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale3 A O3' DG 3 A DG 3 1_555 A P TTI 4 A TTI 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? covale ? covale4 A O3' TTI 4 A TTI 4 1_555 A P DA 5 A DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? metalc ? metalc1 A TE5 TTI 4 A TTI 4 1_555 C O HOH . A HOH 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 B MG MG . A MG 9 1_555 C O HOH . A HOH 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc3 B MG MG . A MG 9 1_555 C O HOH . A HOH 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1 1_555 A N3 DC 8 A DC 8 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1 1_555 A O2 DC 8 A DC 8 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1 1_555 A N4 DC 8 A DC 8 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 UMS 2 A UMS 2 1_555 A N1 DA 7 A DA 7 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 UMS 2 A UMS 2 1_555 A N6 DA 7 A DA 7 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 3 A DG 3 1_555 A N3 DC 6 A DC 6 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 3 A DG 3 1_555 A O2 DC 6 A DC 6 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 3 A DG 3 1_555 A N4 DC 6 A DC 6 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 TTI 4 A TTI 4 1_555 A N1 DA 5 A DA 5 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 TTI 4 A TTI 4 1_555 A N6 DA 5 A DA 5 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 5 A DA 5 1_555 A N3 TTI 4 A TTI 4 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 5 A DA 5 1_555 A O4 TTI 4 A TTI 4 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 6 A DC 6 1_555 A N1 DG 3 A DG 3 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 6 A DC 6 1_555 A O6 DG 3 A DG 3 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 6 A DC 6 1_555 A N2 DG 3 A DG 3 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DA 7 A DA 7 1_555 A N3 UMS 2 A UMS 2 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N6 DA 7 A DA 7 1_555 A O4 UMS 2 A UMS 2 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DC 8 A DC 8 1_555 A N1 DG 1 A DG 1 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N4 DC 8 A DC 8 1_555 A O6 DG 1 A DG 1 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O2 DC 8 A DC 8 1_555 A N2 DG 1 A DG 1 7_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KQ8 _atom_sites.fract_transf_matrix[1][1] 0.023673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.04179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 9 9 MG MG . C 3 HOH A 1 10 10 HOH HOH . C 3 HOH A 2 11 11 HOH HOH . C 3 HOH A 3 12 12 HOH HOH . C 3 HOH A 4 13 13 HOH HOH . C 3 HOH A 5 14 14 HOH HOH . C 3 HOH A 6 15 15 HOH HOH . C 3 HOH A 7 16 16 HOH HOH . C 3 HOH A 8 17 17 HOH HOH . C 3 HOH A 9 18 18 HOH HOH . C 3 HOH A 10 19 19 HOH HOH . C 3 HOH A 11 20 20 HOH HOH . C 3 HOH A 12 21 21 HOH HOH . C 3 HOH A 13 22 22 HOH HOH . C 3 HOH A 14 23 23 HOH HOH . C 3 HOH A 15 24 24 HOH HOH . C 3 HOH A 16 25 25 HOH HOH . C 3 HOH A 17 26 26 HOH HOH . C 3 HOH A 18 27 27 HOH HOH . C 3 HOH A 19 28 28 HOH HOH . C 3 HOH A 20 29 29 HOH HOH . C 3 HOH A 21 30 30 HOH HOH . C 3 HOH A 22 31 31 HOH HOH . C 3 HOH A 23 32 32 HOH HOH . C 3 HOH A 24 33 33 HOH HOH . C 3 HOH A 25 34 34 HOH HOH . C 3 HOH A 26 35 35 HOH HOH . C 3 HOH A 27 36 36 HOH HOH . C 3 HOH A 28 37 37 HOH HOH . C 3 HOH A 29 38 38 HOH HOH . C 3 HOH A 30 39 39 HOH HOH . C 3 HOH A 31 40 40 HOH HOH . C 3 HOH A 32 41 41 HOH HOH . C 3 HOH A 33 42 42 HOH HOH . C 3 HOH A 34 43 43 HOH HOH . C 3 HOH A 35 44 44 HOH HOH . C 3 HOH A 36 45 45 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 32.508 _atom_site.Cartn_y 37.55 _atom_site.Cartn_z -1.471 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 9 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #