data_3KQB
#
_model_server_result.job_id            kx1YFzEOE20sjYDYcnP-Tg 
_model_server_result.datetime_utc      '2024-12-27 03:34:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kqb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    3KQB 
#
_exptl.entry_id    3KQB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KQB 
_cell.length_a            56.7 
_cell.length_b            72.3 
_cell.length_c            77.7 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KQB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 46 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 B SG CYS 3 L CYS 89 1_555 B SG CYS 14 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf7 B SG CYS 10 L CYS 96 1_555 B SG CYS 23 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf8 B SG CYS 25 L CYS 111 1_555 B SG CYS 38 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc2 A O ASN 58 A ASN 72 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc3 A O GLN 61 A GLN 75 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc4 A OE2 GLU 63 A GLU 77 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? 
metalc ? metalc5 A OE2 GLU 66 A GLU 80 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc6 A OE1 GLU 66 A GLU 80 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.086 ? 
metalc ? metalc7 A O TYR 173 A TYR 185 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc8 A O ARG 211 A ARG 222 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? 
metalc ? metalc9 A O LYS 214 A LYS 224 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc10 D NA NA . A NA 302 1_555 F O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc11 D NA NA . A NA 302 1_555 F O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? 
metalc ? metalc12 D NA NA . A NA 302 1_555 F O HOH . A HOH 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3KQB 
_atom_sites.fract_transf_matrix[1][1]    0.017637 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013831 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01287 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 LGJ A 1 301 301 LGJ LGJ . 
D 4 NA A 1 302 302 NA NA . 
E 4 NA A 1 303 303 NA NA . 
F 5 HOH A 1 401 401 HOH HOH . 
F 5 HOH A 2 402 402 HOH HOH . 
F 5 HOH A 3 403 403 HOH HOH . 
F 5 HOH A 4 404 404 HOH HOH . 
F 5 HOH A 5 405 405 HOH HOH . 
F 5 HOH A 6 406 406 HOH HOH . 
F 5 HOH A 7 407 407 HOH HOH . 
F 5 HOH A 8 408 408 HOH HOH . 
F 5 HOH A 9 409 409 HOH HOH . 
F 5 HOH A 10 410 410 HOH HOH . 
F 5 HOH A 11 411 411 HOH HOH . 
F 5 HOH A 12 412 412 HOH HOH . 
F 5 HOH A 13 413 413 HOH HOH . 
F 5 HOH A 14 414 414 HOH HOH . 
F 5 HOH A 15 415 415 HOH HOH . 
F 5 HOH A 16 416 416 HOH HOH . 
F 5 HOH A 17 417 417 HOH HOH . 
F 5 HOH A 18 418 418 HOH HOH . 
F 5 HOH A 19 419 419 HOH HOH . 
F 5 HOH A 20 420 420 HOH HOH . 
F 5 HOH A 21 421 421 HOH HOH . 
F 5 HOH A 22 422 422 HOH HOH . 
F 5 HOH A 23 423 423 HOH HOH . 
F 5 HOH A 24 424 424 HOH HOH . 
F 5 HOH A 25 425 425 HOH HOH . 
F 5 HOH A 26 426 426 HOH HOH . 
F 5 HOH A 27 427 427 HOH HOH . 
F 5 HOH A 28 428 428 HOH HOH . 
F 5 HOH A 29 429 429 HOH HOH . 
F 5 HOH A 30 430 430 HOH HOH . 
F 5 HOH A 31 431 431 HOH HOH . 
F 5 HOH A 32 432 432 HOH HOH . 
F 5 HOH A 33 433 433 HOH HOH . 
F 5 HOH A 34 434 434 HOH HOH . 
F 5 HOH A 35 435 435 HOH HOH . 
F 5 HOH A 36 436 436 HOH HOH . 
F 5 HOH A 37 437 437 HOH HOH . 
F 5 HOH A 38 438 438 HOH HOH . 
F 5 HOH A 39 439 439 HOH HOH . 
F 5 HOH A 40 440 440 HOH HOH . 
F 5 HOH A 41 441 441 HOH HOH . 
F 5 HOH A 42 442 442 HOH HOH . 
F 5 HOH A 43 443 443 HOH HOH . 
F 5 HOH A 44 444 444 HOH HOH . 
F 5 HOH A 45 445 445 HOH HOH . 
F 5 HOH A 46 446 446 HOH HOH . 
F 5 HOH A 47 447 447 HOH HOH . 
F 5 HOH A 48 448 448 HOH HOH . 
F 5 HOH A 49 449 449 HOH HOH . 
F 5 HOH A 50 450 450 HOH HOH . 
F 5 HOH A 51 451 451 HOH HOH . 
F 5 HOH A 52 452 452 HOH HOH . 
F 5 HOH A 53 453 453 HOH HOH . 
F 5 HOH A 54 454 454 HOH HOH . 
F 5 HOH A 55 455 455 HOH HOH . 
F 5 HOH A 56 456 456 HOH HOH . 
F 5 HOH A 57 457 457 HOH HOH . 
F 5 HOH A 58 458 458 HOH HOH . 
F 5 HOH A 59 459 459 HOH HOH . 
F 5 HOH A 60 460 460 HOH HOH . 
F 5 HOH A 61 461 461 HOH HOH . 
F 5 HOH A 62 462 462 HOH HOH . 
F 5 HOH A 63 463 463 HOH HOH . 
F 5 HOH A 64 464 464 HOH HOH . 
F 5 HOH A 65 465 465 HOH HOH . 
F 5 HOH A 66 466 466 HOH HOH . 
F 5 HOH A 67 467 467 HOH HOH . 
F 5 HOH A 68 468 468 HOH HOH . 
F 5 HOH A 69 469 469 HOH HOH . 
F 5 HOH A 70 470 470 HOH HOH . 
F 5 HOH A 71 471 471 HOH HOH . 
F 5 HOH A 72 472 472 HOH HOH . 
F 5 HOH A 73 473 473 HOH HOH . 
F 5 HOH A 74 474 474 HOH HOH . 
F 5 HOH A 75 475 475 HOH HOH . 
F 5 HOH A 76 476 476 HOH HOH . 
F 5 HOH A 77 477 477 HOH HOH . 
F 5 HOH A 78 478 478 HOH HOH . 
F 5 HOH A 79 479 479 HOH HOH . 
G 5 HOH L 1 401 401 HOH HOH . 
G 5 HOH L 2 402 402 HOH HOH . 
G 5 HOH L 3 403 403 HOH HOH . 
G 5 HOH L 4 404 404 HOH HOH . 
G 5 HOH L 5 405 405 HOH HOH . 
G 5 HOH L 6 406 406 HOH HOH . 
G 5 HOH L 7 407 407 HOH HOH . 
G 5 HOH L 8 408 408 HOH HOH . 
G 5 HOH L 9 409 409 HOH HOH . 
G 5 HOH L 10 410 410 HOH HOH . 
G 5 HOH L 11 411 411 HOH HOH . 
G 5 HOH L 12 412 412 HOH HOH . 
G 5 HOH L 13 413 413 HOH HOH . 
G 5 HOH L 14 414 414 HOH HOH . 
G 5 HOH L 15 415 415 HOH HOH . 
G 5 HOH L 16 416 416 HOH HOH . 
G 5 HOH L 17 417 417 HOH HOH . 
G 5 HOH L 18 418 418 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               39.204 
_atom_site.Cartn_y               34.363 
_atom_site.Cartn_z               4.82 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        41.3 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#