data_3KQC # _model_server_result.job_id hokPXvOLhJAM6DZN2j-SNQ _model_server_result.datetime_utc '2024-12-12 07:47:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kqc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 3KQC # _exptl.entry_id 3KQC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KQC _cell.length_a 56.5 _cell.length_b 72.1 _cell.length_c 77.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KQC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 46 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 B SG CYS 3 L CYS 89 1_555 B SG CYS 14 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 B SG CYS 10 L CYS 96 1_555 B SG CYS 23 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 25 L CYS 111 1_555 B SG CYS 38 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc3 A O GLN 61 A GLN 75 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc4 A OE2 GLU 63 A GLU 77 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc5 A OE2 GLU 66 A GLU 80 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc6 A OE1 GLU 66 A GLU 80 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? metalc ? metalc7 A O TYR 173 A TYR 185 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc8 A O ARG 211 A ARG 222 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc9 A O LYS 214 A LYS 224 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc10 D NA NA . A NA 302 1_555 F O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc11 D NA NA . A NA 302 1_555 F O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc12 E NA NA . A NA 303 1_555 F O HOH . A HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3KQC _atom_sites.fract_transf_matrix[1][1] 0.017699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 LGK A 1 301 301 LGK LGK . D 4 NA A 1 302 302 NA NA . E 4 NA A 1 303 303 NA NA . F 5 HOH A 1 401 401 HOH HOH . F 5 HOH A 2 402 402 HOH HOH . F 5 HOH A 3 403 403 HOH HOH . F 5 HOH A 4 404 404 HOH HOH . F 5 HOH A 5 405 405 HOH HOH . F 5 HOH A 6 406 406 HOH HOH . F 5 HOH A 7 407 407 HOH HOH . F 5 HOH A 8 408 408 HOH HOH . F 5 HOH A 9 409 409 HOH HOH . F 5 HOH A 10 410 410 HOH HOH . F 5 HOH A 11 411 411 HOH HOH . F 5 HOH A 12 412 412 HOH HOH . F 5 HOH A 13 413 413 HOH HOH . F 5 HOH A 14 414 414 HOH HOH . F 5 HOH A 15 415 415 HOH HOH . F 5 HOH A 16 416 416 HOH HOH . F 5 HOH A 17 417 417 HOH HOH . F 5 HOH A 18 418 418 HOH HOH . F 5 HOH A 19 419 419 HOH HOH . F 5 HOH A 20 420 420 HOH HOH . F 5 HOH A 21 421 421 HOH HOH . F 5 HOH A 22 422 422 HOH HOH . F 5 HOH A 23 423 423 HOH HOH . F 5 HOH A 24 424 424 HOH HOH . F 5 HOH A 25 425 425 HOH HOH . F 5 HOH A 26 426 426 HOH HOH . F 5 HOH A 27 427 427 HOH HOH . F 5 HOH A 28 428 428 HOH HOH . F 5 HOH A 29 429 429 HOH HOH . F 5 HOH A 30 430 430 HOH HOH . F 5 HOH A 31 431 431 HOH HOH . F 5 HOH A 32 432 432 HOH HOH . F 5 HOH A 33 433 433 HOH HOH . F 5 HOH A 34 434 434 HOH HOH . F 5 HOH A 35 435 435 HOH HOH . F 5 HOH A 36 436 436 HOH HOH . F 5 HOH A 37 437 437 HOH HOH . F 5 HOH A 38 438 438 HOH HOH . F 5 HOH A 39 439 439 HOH HOH . F 5 HOH A 40 440 440 HOH HOH . F 5 HOH A 41 441 441 HOH HOH . F 5 HOH A 42 442 442 HOH HOH . F 5 HOH A 43 443 443 HOH HOH . F 5 HOH A 44 444 444 HOH HOH . F 5 HOH A 45 445 445 HOH HOH . F 5 HOH A 46 446 446 HOH HOH . F 5 HOH A 47 447 447 HOH HOH . F 5 HOH A 48 448 448 HOH HOH . F 5 HOH A 49 449 449 HOH HOH . F 5 HOH A 50 450 450 HOH HOH . F 5 HOH A 51 451 451 HOH HOH . F 5 HOH A 52 452 452 HOH HOH . F 5 HOH A 53 453 453 HOH HOH . F 5 HOH A 54 454 454 HOH HOH . F 5 HOH A 55 455 455 HOH HOH . F 5 HOH A 56 456 456 HOH HOH . F 5 HOH A 57 457 457 HOH HOH . F 5 HOH A 58 458 458 HOH HOH . F 5 HOH A 59 459 459 HOH HOH . F 5 HOH A 60 460 460 HOH HOH . F 5 HOH A 61 461 461 HOH HOH . F 5 HOH A 62 462 462 HOH HOH . F 5 HOH A 63 463 463 HOH HOH . F 5 HOH A 64 464 464 HOH HOH . F 5 HOH A 65 465 465 HOH HOH . F 5 HOH A 66 466 466 HOH HOH . F 5 HOH A 67 467 467 HOH HOH . F 5 HOH A 68 468 468 HOH HOH . F 5 HOH A 69 469 469 HOH HOH . F 5 HOH A 70 470 470 HOH HOH . F 5 HOH A 71 471 471 HOH HOH . F 5 HOH A 72 472 472 HOH HOH . F 5 HOH A 73 473 473 HOH HOH . F 5 HOH A 74 474 474 HOH HOH . F 5 HOH A 75 475 475 HOH HOH . F 5 HOH A 76 476 476 HOH HOH . F 5 HOH A 77 477 477 HOH HOH . F 5 HOH A 78 478 478 HOH HOH . F 5 HOH A 79 479 479 HOH HOH . F 5 HOH A 80 480 480 HOH HOH . F 5 HOH A 81 481 481 HOH HOH . F 5 HOH A 82 482 482 HOH HOH . F 5 HOH A 83 483 483 HOH HOH . F 5 HOH A 84 484 484 HOH HOH . F 5 HOH A 85 485 485 HOH HOH . F 5 HOH A 86 486 486 HOH HOH . F 5 HOH A 87 487 487 HOH HOH . F 5 HOH A 88 488 488 HOH HOH . F 5 HOH A 89 489 489 HOH HOH . G 5 HOH L 1 401 401 HOH HOH . G 5 HOH L 2 402 402 HOH HOH . G 5 HOH L 3 403 403 HOH HOH . G 5 HOH L 4 404 404 HOH HOH . G 5 HOH L 5 405 405 HOH HOH . G 5 HOH L 6 406 406 HOH HOH . G 5 HOH L 7 407 407 HOH HOH . G 5 HOH L 8 408 408 HOH HOH . G 5 HOH L 9 409 409 HOH HOH . G 5 HOH L 10 410 410 HOH HOH . G 5 HOH L 11 411 411 HOH HOH . G 5 HOH L 12 412 412 HOH HOH . G 5 HOH L 13 413 413 HOH HOH . G 5 HOH L 14 414 414 HOH HOH . G 5 HOH L 15 415 415 HOH HOH . G 5 HOH L 16 416 416 HOH HOH . G 5 HOH L 17 417 417 HOH HOH . G 5 HOH L 18 418 418 HOH HOH . G 5 HOH L 19 419 419 HOH HOH . G 5 HOH L 20 420 420 HOH HOH . G 5 HOH L 21 421 421 HOH HOH . G 5 HOH L 22 422 422 HOH HOH . G 5 HOH L 23 423 423 HOH HOH . G 5 HOH L 24 424 424 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 38.912 _atom_site.Cartn_y 34.4 _atom_site.Cartn_z 4.808 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #