data_3KQD
#
_model_server_result.job_id            G1jek7jS7iz-s4VOZGAsJA 
_model_server_result.datetime_utc      '2024-12-26 19:36:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3kqd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    3KQD 
#
_exptl.entry_id    3KQD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              599.606 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "1-(3-(5-OXO-4,5-DIHYDRO-1H-1,2,4-TRIAZOL-3-YL)PHENYL)-6-(2'-(PYRROLIDIN-1-YLMETHYL)BIPHENYL-4-YL)-3-(TRIFLUOROMETHYL)-5,6-DIHYDRO-1H-PYRAZOLO[3,4-C]PYRIDIN-7(4H)-ONE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3KQD 
_cell.length_a            57.7 
_cell.length_b            72.1 
_cell.length_c            76.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3KQD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 46 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
disulf ? disulf6 B SG CYS 3 L CYS 89 1_555 B SG CYS 14 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf7 B SG CYS 10 L CYS 96 1_555 B SG CYS 23 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 B SG CYS 25 L CYS 111 1_555 B SG CYS 38 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc2 A O ASN 58 A ASN 72 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc3 A O GLN 61 A GLN 75 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc4 A OE2 GLU 63 A GLU 77 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? 
metalc ? metalc5 A OE2 GLU 66 A GLU 80 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc6 A OE1 GLU 66 A GLU 80 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.129 ? 
metalc ? metalc7 A O TYR 173 A TYR 185 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc8 A O ARG 211 A ARG 222 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? 
metalc ? metalc9 A O LYS 214 A LYS 224 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
#
_chem_comp.formula           'C32 H28 F3 N7 O2' 
_chem_comp.formula_weight    599.606 
_chem_comp.id                LGL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "1-(3-(5-OXO-4,5-DIHYDRO-1H-1,2,4-TRIAZOL-3-YL)PHENYL)-6-(2'-(PYRROLIDIN-1-YLMETHYL)BIPHENYL-4-YL)-3-(TRIFLUOROMETHYL)-5,6-DIHYDRO-1H-PYRAZOLO[3,4-C]PYRIDIN-7(4H)-ONE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LGL doub 194 n y 
C1 C4 LGL sing 195 n y 
C2 C8 LGL sing 196 n y 
C3 C7 LGL doub 197 n y 
C3 C9 LGL sing 198 n y 
C4 C14 LGL doub 199 n y 
C5 C10 LGL doub 200 n y 
C5 C13 LGL sing 201 n y 
C6 C11 LGL sing 202 n y 
C6 C13 LGL doub 203 n y 
C7 C15 LGL sing 204 n y 
C8 C17 LGL doub 205 n y 
C9 C18 LGL doub 206 n y 
C10 C19 LGL sing 207 n y 
C11 C19 LGL doub 208 n y 
C12 C15 LGL doub 209 n y 
C12 C18 LGL sing 210 n y 
C13 C14 LGL sing 211 n y 
C14 C17 LGL sing 212 n y 
C15 C22 LGL sing 213 n n 
C16 C20 LGL doub 214 n y 
C16 C21 LGL sing 215 n y 
C16 C25 LGL sing 216 n n 
C17 C31 LGL sing 217 n n 
C18 N35 LGL sing 218 n y 
C19 N38 LGL sing 219 n n 
C20 C23 LGL sing 220 n n 
C20 N35 LGL sing 221 n y 
C21 C32 LGL sing 222 n n 
C21 N33 LGL doub 223 n y 
C22 N34 LGL doub 224 n n 
C22 N36 LGL sing 225 n n 
C23 N38 LGL sing 226 n n 
C23 O40 LGL doub 227 n n 
C24 N36 LGL sing 228 n n 
C24 N37 LGL sing 229 n n 
C24 O41 LGL doub 230 n n 
C25 C28 LGL sing 231 n n 
C26 C27 LGL sing 232 n n 
C26 C29 LGL sing 233 n n 
C27 C30 LGL sing 234 n n 
C28 N38 LGL sing 235 n n 
C29 N39 LGL sing 236 n n 
C30 N39 LGL sing 237 n n 
C31 N39 LGL sing 238 n n 
C32 F42 LGL sing 239 n n 
C32 F43 LGL sing 240 n n 
C32 F44 LGL sing 241 n n 
N33 N35 LGL sing 242 n y 
N34 N37 LGL sing 243 n n 
C1 H1 LGL sing 244 n n 
C2 H2 LGL sing 245 n n 
C3 H3 LGL sing 246 n n 
C4 H4 LGL sing 247 n n 
C5 H5 LGL sing 248 n n 
C6 H6 LGL sing 249 n n 
C7 H7 LGL sing 250 n n 
C8 H8 LGL sing 251 n n 
C9 H9 LGL sing 252 n n 
C10 H10 LGL sing 253 n n 
C11 H11 LGL sing 254 n n 
C12 H12 LGL sing 255 n n 
C25 H25 LGL sing 256 n n 
C25 H25A LGL sing 257 n n 
C26 H26 LGL sing 258 n n 
C26 H26A LGL sing 259 n n 
C27 H27 LGL sing 260 n n 
C27 H27A LGL sing 261 n n 
C28 H28 LGL sing 262 n n 
C28 H28A LGL sing 263 n n 
C29 H29 LGL sing 264 n n 
C29 H29A LGL sing 265 n n 
C30 H30 LGL sing 266 n n 
C30 H30A LGL sing 267 n n 
C31 H31 LGL sing 268 n n 
C31 H31A LGL sing 269 n n 
N36 HN36 LGL sing 270 n n 
N37 HN37 LGL sing 271 n n 
#
_atom_sites.entry_id                     3KQD 
_atom_sites.fract_transf_matrix[1][1]    0.017331 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01387 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013021 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 LGL A 1 301 301 LGL LGL . 
D 4 NA A 1 302 302 NA NA . 
E 4 NA A 1 303 303 NA NA . 
F 5 HOH A 1 401 401 HOH HOH . 
F 5 HOH A 2 402 402 HOH HOH . 
F 5 HOH A 3 403 403 HOH HOH . 
F 5 HOH A 4 404 404 HOH HOH . 
F 5 HOH A 5 405 405 HOH HOH . 
F 5 HOH A 6 406 406 HOH HOH . 
F 5 HOH A 7 407 407 HOH HOH . 
F 5 HOH A 8 408 408 HOH HOH . 
F 5 HOH A 9 409 409 HOH HOH . 
F 5 HOH A 10 410 410 HOH HOH . 
F 5 HOH A 11 411 411 HOH HOH . 
F 5 HOH A 12 412 412 HOH HOH . 
F 5 HOH A 13 413 413 HOH HOH . 
F 5 HOH A 14 414 414 HOH HOH . 
G 5 HOH L 1 401 401 HOH HOH . 
G 5 HOH L 2 402 402 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LGL . . . C 3 39.85 35.938 20.774 1 55.22 ? C1 LGL 301 A 1 
HETATM 2 C C2 LGL . . . C 3 39.474 36.084 22.115 1 56.3 ? C2 LGL 301 A 1 
HETATM 3 C C3 LGL . . . C 3 39.464 26.623 14.625 1 38.15 ? C3 LGL 301 A 1 
HETATM 4 C C4 LGL . . . C 3 39.193 35.009 19.954 1 54.37 ? C4 LGL 301 A 1 
HETATM 5 C C5 LGL . . . C 3 37.538 31.877 19.86 1 45.73 ? C5 LGL 301 A 1 
HETATM 6 C C6 LGL . . . C 3 36.801 33.762 18.492 1 47.34 ? C6 LGL 301 A 1 
HETATM 7 C C7 LGL . . . C 3 40.028 27.256 13.496 1 38.1 ? C7 LGL 301 A 1 
HETATM 8 C C8 LGL . . . C 3 38.44 35.299 22.636 1 58.04 ? C8 LGL 301 A 1 
HETATM 9 C C9 LGL . . . C 3 38.124 26.842 14.957 1 38.14 ? C9 LGL 301 A 1 
HETATM 10 C C10 LGL . . . C 3 36.867 30.995 19.004 1 44.71 ? C10 LGL 301 A 1 
HETATM 11 C C11 LGL . . . C 3 36.127 32.881 17.64 1 45.29 ? C11 LGL 301 A 1 
HETATM 12 C C12 LGL . . . C 3 37.916 28.331 13.031 1 35.62 ? C12 LGL 301 A 1 
HETATM 13 C C13 LGL . . . C 3 37.503 33.266 19.602 1 49.76 ? C13 LGL 301 A 1 
HETATM 14 C C14 LGL . . . C 3 38.168 34.213 20.477 1 54.33 ? C14 LGL 301 A 1 
HETATM 15 C C15 LGL . . . C 3 39.244 28.109 12.703 1 35.89 ? C15 LGL 301 A 1 
HETATM 16 C C16 LGL . . . C 3 34.187 28.898 15.087 1 42.9 ? C16 LGL 301 A 1 
HETATM 17 C C17 LGL . . . C 3 37.781 34.369 21.821 1 58.7 ? C17 LGL 301 A 1 
HETATM 18 C C18 LGL . . . C 3 37.359 27.692 14.143 1 38.95 ? C18 LGL 301 A 1 
HETATM 19 C C19 LGL . . . C 3 36.145 31.501 17.898 1 45.64 ? C19 LGL 301 A 1 
HETATM 20 C C20 LGL . . . C 3 35.554 28.919 15.248 1 42.28 ? C20 LGL 301 A 1 
HETATM 21 C C21 LGL . . . C 3 33.972 27.933 14.083 1 45.02 ? C21 LGL 301 A 1 
HETATM 22 C C22 LGL . . . C 3 39.788 28.771 11.537 1 34.74 ? C22 LGL 301 A 1 
HETATM 23 C C23 LGL . . . C 3 36.286 29.755 16.181 1 42.77 ? C23 LGL 301 A 1 
HETATM 24 C C24 LGL . . . C 3 39.714 30.015 9.743 1 33.46 ? C24 LGL 301 A 1 
HETATM 25 C C25 LGL . . . C 3 33.312 29.778 15.888 1 41.32 ? C25 LGL 301 A 1 
HETATM 26 C C26 LGL . . . C 3 33.385 35.038 21.944 1 65.89 ? C26 LGL 301 A 1 
HETATM 27 C C27 LGL . . . C 3 33.151 34.147 23.162 1 65.96 ? C27 LGL 301 A 1 
HETATM 28 C C28 LGL . . . C 3 34.117 30.983 16.444 1 42.28 ? C28 LGL 301 A 1 
HETATM 29 C C29 LGL . . . C 3 34.761 34.631 21.439 1 66.53 ? C29 LGL 301 A 1 
HETATM 30 C C30 LGL . . . C 3 34.496 33.482 23.448 1 66.42 ? C30 LGL 301 A 1 
HETATM 31 C C31 LGL . . . C 3 36.686 33.547 22.436 1 62.97 ? C31 LGL 301 A 1 
HETATM 32 C C32 LGL . . . C 3 32.713 27.503 13.456 1 47.49 ? C32 LGL 301 A 1 
HETATM 33 N N33 LGL . . . C 3 35.107 27.386 13.644 1 41.51 ? N33 LGL 301 A 1 
HETATM 34 N N34 LGL . . . C 3 41.021 28.739 11.137 1 31.05 ? N34 LGL 301 A 1 
HETATM 35 N N35 LGL . . . C 3 36.034 27.984 14.391 1 39.27 ? N35 LGL 301 A 1 
HETATM 36 N N36 LGL . . . C 3 38.941 29.506 10.761 1 36.16 ? N36 LGL 301 A 1 
HETATM 37 N N37 LGL . . . C 3 41.002 29.517 10.004 1 31.69 ? N37 LGL 301 A 1 
HETATM 38 N N38 LGL . . . C 3 35.47 30.621 16.966 1 44.05 ? N38 LGL 301 A 1 
HETATM 39 N N39 LGL . . . C 3 35.452 34.299 22.69 1 66.36 ? N39 LGL 301 A 1 
HETATM 40 O O40 LGL . . . C 3 37.508 29.712 16.264 1 40.66 ? O40 LGL 301 A 1 
HETATM 41 O O41 LGL . . . C 3 39.356 30.737 8.825 1 32.68 ? O41 LGL 301 A 1 
HETATM 42 F F42 LGL . . . C 3 32.851 26.451 12.567 1 49.92 ? F42 LGL 301 A 1 
HETATM 43 F F43 LGL . . . C 3 31.712 27.172 14.357 1 47.62 ? F43 LGL 301 A 1 
HETATM 44 F F44 LGL . . . C 3 32.214 28.479 12.622 1 43.83 ? F44 LGL 301 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           44 
#