data_3KQE # _model_server_result.job_id CAwXYZdtBV6Rhru7ehn6Ug _model_server_result.datetime_utc '2024-12-26 23:12:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3kqe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3KQE # _exptl.entry_id 3KQE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 545.634 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3-METHYL-1-(3-(5-OXO-4,5-DIHYDRO-1H-1,2,4-TRIAZOL-3-YL)PHENYL)-6-(2'-(PYRROLIDIN-1-YLMETHYL)BIPHENYL-4-YL)-5,6-DIHYDRO-1H-PYRAZOLO[3,4-C]PYRIDIN-7(4H)-ONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3KQE _cell.length_a 56.7 _cell.length_b 72.2 _cell.length_c 77.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3KQE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 46 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 3 L CYS 89 1_555 B SG CYS 14 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 B SG CYS 10 L CYS 96 1_555 B SG CYS 23 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf8 B SG CYS 25 L CYS 111 1_555 B SG CYS 38 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc3 A O GLN 61 A GLN 75 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc4 A OE2 GLU 66 A GLU 80 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc5 A OE1 GLU 66 A GLU 80 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc6 A O TYR 173 A TYR 185 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc7 A O ARG 211 A ARG 222 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc8 A O LYS 214 A LYS 224 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc9 D NA NA . A NA 302 1_555 F O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? # _chem_comp.formula 'C32 H31 N7 O2' _chem_comp.formula_weight 545.634 _chem_comp.id LGM _chem_comp.mon_nstd_flag . _chem_comp.name "3-METHYL-1-(3-(5-OXO-4,5-DIHYDRO-1H-1,2,4-TRIAZOL-3-YL)PHENYL)-6-(2'-(PYRROLIDIN-1-YLMETHYL)BIPHENYL-4-YL)-5,6-DIHYDRO-1H-PYRAZOLO[3,4-C]PYRIDIN-7(4H)-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LGM doub 194 n y C1 C4 LGM sing 195 n y C2 C8 LGM sing 196 n y C3 C7 LGM doub 197 n y C3 C9 LGM sing 198 n y C4 C14 LGM doub 199 n y C5 C10 LGM doub 200 n y C5 C13 LGM sing 201 n y C6 C11 LGM sing 202 n y C6 C13 LGM doub 203 n y C7 C15 LGM sing 204 n y C8 C17 LGM doub 205 n y C9 C18 LGM doub 206 n y C10 C19 LGM sing 207 n y C11 C19 LGM doub 208 n y C12 C15 LGM doub 209 n y C12 C18 LGM sing 210 n y C13 C14 LGM sing 211 n y C14 C17 LGM sing 212 n y C15 C22 LGM sing 213 n n C16 C20 LGM doub 214 n y C16 C21 LGM sing 215 n y C16 C25 LGM sing 216 n n C17 C32 LGM sing 217 n n C18 N35 LGM sing 218 n y C19 N38 LGM sing 219 n n C20 C23 LGM sing 220 n n C20 N35 LGM sing 221 n y C21 C31 LGM sing 222 n n C21 N33 LGM doub 223 n y C22 N34 LGM doub 224 n n C22 N36 LGM sing 225 n n C23 N38 LGM sing 226 n n C23 O40 LGM doub 227 n n C24 N36 LGM sing 228 n n C24 N37 LGM sing 229 n n C24 O41 LGM doub 230 n n C25 C28 LGM sing 231 n n C26 C27 LGM sing 232 n n C26 C29 LGM sing 233 n n C27 C30 LGM sing 234 n n C28 N38 LGM sing 235 n n C29 N39 LGM sing 236 n n C30 N39 LGM sing 237 n n C32 N39 LGM sing 238 n n N33 N35 LGM sing 239 n y N34 N37 LGM sing 240 n n C1 H1 LGM sing 241 n n C2 H2 LGM sing 242 n n C3 H3 LGM sing 243 n n C4 H4 LGM sing 244 n n C5 H5 LGM sing 245 n n C6 H6 LGM sing 246 n n C7 H7 LGM sing 247 n n C8 H8 LGM sing 248 n n C9 H9 LGM sing 249 n n C10 H10 LGM sing 250 n n C11 H11 LGM sing 251 n n C12 H12 LGM sing 252 n n C25 H25 LGM sing 253 n n C25 H25A LGM sing 254 n n C26 H26 LGM sing 255 n n C26 H26A LGM sing 256 n n C27 H27 LGM sing 257 n n C27 H27A LGM sing 258 n n C28 H28 LGM sing 259 n n C28 H28A LGM sing 260 n n C29 H29 LGM sing 261 n n C29 H29A LGM sing 262 n n C30 H30 LGM sing 263 n n C30 H30A LGM sing 264 n n C31 H31 LGM sing 265 n n C31 H31A LGM sing 266 n n C31 H31B LGM sing 267 n n C32 H32 LGM sing 268 n n C32 H32A LGM sing 269 n n N36 HN36 LGM sing 270 n n N37 HN37 LGM sing 271 n n # _atom_sites.entry_id 3KQE _atom_sites.fract_transf_matrix[1][1] 0.017637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 LGM A 1 301 301 LGM LGM . D 4 NA A 1 302 302 NA NA . E 4 NA A 1 303 303 NA NA . F 5 HOH A 1 401 401 HOH HOH . F 5 HOH A 2 402 402 HOH HOH . F 5 HOH A 3 403 403 HOH HOH . F 5 HOH A 4 404 404 HOH HOH . F 5 HOH A 5 405 405 HOH HOH . F 5 HOH A 6 406 406 HOH HOH . F 5 HOH A 7 407 407 HOH HOH . F 5 HOH A 8 408 408 HOH HOH . F 5 HOH A 9 409 409 HOH HOH . F 5 HOH A 10 410 410 HOH HOH . F 5 HOH A 11 411 411 HOH HOH . F 5 HOH A 12 412 412 HOH HOH . F 5 HOH A 13 413 413 HOH HOH . F 5 HOH A 14 414 414 HOH HOH . F 5 HOH A 15 415 415 HOH HOH . F 5 HOH A 16 416 416 HOH HOH . F 5 HOH A 17 417 417 HOH HOH . F 5 HOH A 18 418 418 HOH HOH . F 5 HOH A 19 419 419 HOH HOH . F 5 HOH A 20 420 420 HOH HOH . F 5 HOH A 21 421 421 HOH HOH . F 5 HOH A 22 422 422 HOH HOH . F 5 HOH A 23 423 423 HOH HOH . F 5 HOH A 24 424 424 HOH HOH . F 5 HOH A 25 425 425 HOH HOH . F 5 HOH A 26 426 426 HOH HOH . F 5 HOH A 27 427 427 HOH HOH . F 5 HOH A 28 428 428 HOH HOH . F 5 HOH A 29 429 429 HOH HOH . F 5 HOH A 30 430 430 HOH HOH . F 5 HOH A 31 431 431 HOH HOH . F 5 HOH A 32 432 432 HOH HOH . F 5 HOH A 33 433 433 HOH HOH . F 5 HOH A 34 434 434 HOH HOH . F 5 HOH A 35 435 435 HOH HOH . F 5 HOH A 36 436 436 HOH HOH . F 5 HOH A 37 437 437 HOH HOH . F 5 HOH A 38 438 438 HOH HOH . F 5 HOH A 39 439 439 HOH HOH . F 5 HOH A 40 440 440 HOH HOH . F 5 HOH A 41 441 441 HOH HOH . F 5 HOH A 42 442 442 HOH HOH . F 5 HOH A 43 443 443 HOH HOH . F 5 HOH A 44 444 444 HOH HOH . F 5 HOH A 45 445 445 HOH HOH . F 5 HOH A 46 446 446 HOH HOH . F 5 HOH A 47 447 447 HOH HOH . F 5 HOH A 48 448 448 HOH HOH . F 5 HOH A 49 449 449 HOH HOH . F 5 HOH A 50 450 450 HOH HOH . F 5 HOH A 51 451 451 HOH HOH . F 5 HOH A 52 452 452 HOH HOH . F 5 HOH A 53 453 453 HOH HOH . F 5 HOH A 54 454 454 HOH HOH . F 5 HOH A 55 455 455 HOH HOH . F 5 HOH A 56 456 456 HOH HOH . F 5 HOH A 57 457 457 HOH HOH . F 5 HOH A 58 458 458 HOH HOH . F 5 HOH A 59 459 459 HOH HOH . F 5 HOH A 60 460 460 HOH HOH . G 5 HOH L 1 401 401 HOH HOH . G 5 HOH L 2 402 402 HOH HOH . G 5 HOH L 3 403 403 HOH HOH . G 5 HOH L 4 404 404 HOH HOH . G 5 HOH L 5 405 405 HOH HOH . G 5 HOH L 6 406 406 HOH HOH . G 5 HOH L 7 407 407 HOH HOH . G 5 HOH L 8 408 408 HOH HOH . G 5 HOH L 9 409 409 HOH HOH . G 5 HOH L 10 410 410 HOH HOH . G 5 HOH L 11 411 411 HOH HOH . G 5 HOH L 12 412 412 HOH HOH . G 5 HOH L 13 413 413 HOH HOH . G 5 HOH L 14 414 414 HOH HOH . G 5 HOH L 15 415 415 HOH HOH . G 5 HOH L 16 416 416 HOH HOH . G 5 HOH L 17 417 417 HOH HOH . G 5 HOH L 18 418 418 HOH HOH . G 5 HOH L 19 419 419 HOH HOH . G 5 HOH L 20 461 461 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LGM . . . C 3 38.874 35.759 21.071 1 43.01 ? C1 LGM 301 A 1 HETATM 2 C C2 LGM . . . C 3 38.439 35.911 22.391 1 44.55 ? C2 LGM 301 A 1 HETATM 3 C C3 LGM . . . C 3 38.738 26.598 14.564 1 31.87 ? C3 LGM 301 A 1 HETATM 4 C C4 LGM . . . C 3 38.227 34.854 20.225 1 42.84 ? C4 LGM 301 A 1 HETATM 5 C C5 LGM . . . C 3 35.922 33.646 18.592 1 39.45 ? C5 LGM 301 A 1 HETATM 6 C C6 LGM . . . C 3 36.48 31.773 20.063 1 38.6 ? C6 LGM 301 A 1 HETATM 7 C C7 LGM . . . C 3 39.26 27.291 13.458 1 32.7 ? C7 LGM 301 A 1 HETATM 8 C C8 LGM . . . C 3 37.376 35.14 22.873 1 45.08 ? C8 LGM 301 A 1 HETATM 9 C C9 LGM . . . C 3 37.4 26.759 14.929 1 32.03 ? C9 LGM 301 A 1 HETATM 10 C C10 LGM . . . C 3 35.303 32.757 17.702 1 37.81 ? C10 LGM 301 A 1 HETATM 11 C C11 LGM . . . C 3 35.858 30.885 19.175 1 39.11 ? C11 LGM 301 A 1 HETATM 12 C C12 LGM . . . C 3 37.091 28.3 13.087 1 31.47 ? C12 LGM 301 A 1 HETATM 13 C C13 LGM . . . C 3 36.514 33.153 19.776 1 40.74 ? C13 LGM 301 A 1 HETATM 14 C C14 LGM . . . C 3 37.157 34.085 20.696 1 42.48 ? C14 LGM 301 A 1 HETATM 15 C C15 LGM . . . C 3 38.43 28.154 12.72 1 31.32 ? C15 LGM 301 A 1 HETATM 16 C C16 LGM . . . C 3 33.367 28.698 15.242 1 38.49 ? C16 LGM 301 A 1 HETATM 17 C C17 LGM . . . C 3 36.728 34.232 22.027 1 46.33 ? C17 LGM 301 A 1 HETATM 18 C C18 LGM . . . C 3 36.576 27.608 14.181 1 32.56 ? C18 LGM 301 A 1 HETATM 19 C C19 LGM . . . C 3 35.262 31.381 18.001 1 39.78 ? C19 LGM 301 A 1 HETATM 20 C C20 LGM . . . C 3 34.736 28.768 15.36 1 38.78 ? C20 LGM 301 A 1 HETATM 21 C C21 LGM . . . C 3 33.145 27.727 14.245 1 38.77 ? C21 LGM 301 A 1 HETATM 22 C C22 LGM . . . C 3 38.928 28.856 11.557 1 27.69 ? C22 LGM 301 A 1 HETATM 23 C C23 LGM . . . C 3 35.445 29.638 16.276 1 41.38 ? C23 LGM 301 A 1 HETATM 24 C C24 LGM . . . C 3 38.813 30.133 9.791 1 26.28 ? C24 LGM 301 A 1 HETATM 25 C C25 LGM . . . C 3 32.48 29.539 16.079 1 37.88 ? C25 LGM 301 A 1 HETATM 26 C C26 LGM . . . C 3 32.707 34.353 21.637 1 58.49 ? C26 LGM 301 A 1 HETATM 27 C C27 LGM . . . C 3 32.226 33.623 22.884 1 57.74 ? C27 LGM 301 A 1 HETATM 28 C C28 LGM . . . C 3 33.233 30.789 16.607 1 38.3 ? C28 LGM 301 A 1 HETATM 29 C C29 LGM . . . C 3 33.91 35.142 22.112 1 57.08 ? C29 LGM 301 A 1 HETATM 30 C C30 LGM . . . C 3 33.457 33.471 23.77 1 57.21 ? C30 LGM 301 A 1 HETATM 31 C C31 LGM . . . C 3 31.862 27.248 13.709 1 38.73 ? C31 LGM 301 A 1 HETATM 32 C C32 LGM . . . C 3 35.587 33.438 22.596 1 50.67 ? C32 LGM 301 A 1 HETATM 33 N N33 LGM . . . C 3 34.289 27.209 13.766 1 37.28 ? N33 LGM 301 A 1 HETATM 34 N N34 LGM . . . C 3 40.134 28.803 11.088 1 28.8 ? N34 LGM 301 A 1 HETATM 35 N N35 LGM . . . C 3 35.236 27.845 14.476 1 36.35 ? N35 LGM 301 A 1 HETATM 36 N N36 LGM . . . C 3 38.075 29.621 10.838 1 27.97 ? N36 LGM 301 A 1 HETATM 37 N N37 LGM . . . C 3 40.095 29.605 9.978 1 25.6 ? N37 LGM 301 A 1 HETATM 38 N N38 LGM . . . C 3 34.625 30.48 17.073 1 41.19 ? N38 LGM 301 A 1 HETATM 39 N N39 LGM . . . C 3 34.514 34.282 23.14 1 55.61 ? N39 LGM 301 A 1 HETATM 40 O O40 LGM . . . C 3 36.657 29.656 16.324 1 45.42 ? O40 LGM 301 A 1 HETATM 41 O O41 LGM . . . C 3 38.438 30.883 8.895 1 26.53 ? O41 LGM 301 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #